Wall clock time and date at job start Mon Mar 30 2020 06:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33816 * 124.52075 * 2 1 4 4 C 1.37475 * 115.09762 * 179.71155 * 3 2 1 5 5 C 1.36648 * 113.29459 * 0.48426 * 4 3 2 6 6 C 1.46582 * 125.45676 * 179.80013 * 5 4 3 7 7 O 1.21705 * 120.00220 * 353.40452 * 6 5 4 8 8 N 1.34773 * 120.00263 * 173.39658 * 6 5 4 9 9 C 1.46508 * 119.99687 * 354.92485 * 8 6 5 10 10 C 1.50692 * 109.47456 * 84.75528 * 9 8 6 11 11 H 1.08000 * 119.99921 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00037 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00038 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99837 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47428 * 59.99712 * 14 12 10 16 16 H 1.48507 * 109.46979 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47070 * 299.99487 * 14 12 10 18 18 C 1.46502 * 120.00454 * 174.63741 * 8 6 5 19 19 C 1.53006 * 117.49396 * 17.03221 * 18 8 6 20 20 C 1.52995 * 117.49931 * 308.37119 * 18 8 6 21 21 S 1.70613 * 124.51838 * 179.97438 * 2 1 3 22 22 H 1.08991 * 109.47168 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46813 * 300.00406 * 1 2 3 24 24 H 1.09004 * 109.47124 * 59.99681 * 1 2 3 25 25 H 1.07995 * 122.45007 * 359.97438 * 3 2 1 26 26 H 1.08001 * 123.35398 * 180.29467 * 4 3 2 27 27 H 1.09006 * 109.46809 * 204.75642 * 9 8 6 28 28 H 1.09003 * 109.46877 * 324.74975 * 9 8 6 29 29 H 0.96994 * 120.00491 * 179.97438 * 13 12 10 30 30 H 1.09000 * 115.55271 * 162.69662 * 18 8 6 31 31 H 1.09001 * 117.49520 * 359.97438 * 19 18 8 32 32 H 1.08997 * 117.49391 * 145.01756 * 19 18 8 33 33 H 1.09001 * 117.49918 * 214.97659 * 20 18 8 34 34 H 1.09002 * 117.50142 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8775 0.0063 5 6 3.9492 -0.4491 0.0008 6 6 5.3123 -0.9884 0.0012 7 8 6.2636 -0.2381 -0.1143 8 7 5.5122 -2.3150 0.1297 9 6 4.3765 -3.2060 0.3802 10 6 3.7264 -3.5716 -0.9291 11 1 4.1195 -3.1793 -1.8554 12 6 2.6290 -4.4063 -0.9447 13 7 2.1500 -4.8836 0.1832 14 14 1.8236 -4.8601 -2.5679 15 1 2.8119 -5.5507 -3.4349 16 1 0.6724 -5.7631 -2.3138 17 1 1.3466 -3.6277 -3.2454 18 6 6.8642 -2.8669 0.0126 19 6 8.0380 -1.8944 0.1447 20 6 7.6800 -2.4814 -1.2230 21 16 2.4739 -1.4058 0.0006 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8429 2.0964 -0.0004 26 1 4.3551 1.6702 0.0117 27 1 4.7271 -4.1107 0.8770 28 1 3.6511 -2.6997 1.0172 29 1 1.3778 -5.4705 0.1724 30 1 6.9972 -3.8732 0.4096 31 1 7.8042 -0.8440 0.3183 32 1 8.9433 -2.2612 0.6283 33 1 8.3500 -3.2340 -1.6386 34 1 7.2107 -1.8175 -1.9490 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042359423.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:47 Heat of formation + Delta-G solvation = 21.122189 kcal Electronic energy + Delta-G solvation = -18260.975910 eV Core-core repulsion = 15479.419413 eV Total energy + Delta-G solvation = -2781.556498 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.21820 -38.63918 -37.13102 -36.19006 -34.19237 -32.52519 -29.21134 -28.11692 -25.08613 -24.57513 -23.51869 -23.24440 -21.21829 -19.28857 -18.81075 -18.28167 -17.37843 -16.55799 -16.28176 -16.18171 -15.91152 -14.98030 -14.67621 -14.59226 -14.32125 -13.97910 -13.93572 -13.70991 -13.05924 -13.01809 -12.87476 -12.66698 -12.48873 -12.37019 -12.18133 -12.14950 -11.53251 -11.25487 -10.82844 -10.56041 -10.28979 -9.52260 -9.19771 -9.08723 -8.24992 -6.31405 -0.18195 1.01606 1.39132 1.45372 1.50575 1.54232 1.58470 2.14757 2.31842 2.40209 3.07161 3.11050 3.68430 4.01768 4.11706 4.20624 4.23455 4.47281 4.60651 4.65966 4.78144 4.79707 4.81941 4.83289 5.03577 5.11356 5.12798 5.27363 5.42015 5.45319 5.63377 5.74013 5.88216 5.94733 6.43135 6.71566 7.22865 7.32034 8.77791 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.011344 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.059078 B = 2467.776981 C = 3995.705160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.289 4.289 3 C -0.177 4.177 4 C -0.071 4.071 5 C -0.333 4.333 6 C 0.583 3.417 7 O -0.576 6.576 8 N -0.573 5.573 9 C 0.234 3.766 10 C -0.536 4.536 11 H 0.052 0.948 12 C 0.053 3.947 13 N -0.893 5.893 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.273 1.273 17 H -0.268 1.268 18 C 0.063 3.937 19 C -0.194 4.194 20 C -0.184 4.184 21 S 0.360 5.640 22 H 0.060 0.940 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.150 0.850 26 H 0.142 0.858 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.275 0.725 30 H 0.140 0.860 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 4.490 0.362 4.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.409 4.409 3 C -0.207 4.207 4 C -0.107 4.107 5 C -0.454 4.454 6 C 0.374 3.626 7 O -0.461 6.461 8 N -0.301 5.301 9 C 0.112 3.888 10 C -0.579 4.579 11 H 0.071 0.929 12 C -0.153 4.153 13 N -0.529 5.529 14 Si 0.756 3.244 15 H -0.199 1.199 16 H -0.198 1.198 17 H -0.193 1.193 18 C -0.041 4.041 19 C -0.231 4.231 20 C -0.223 4.223 21 S 0.637 5.363 22 H 0.079 0.921 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.168 0.832 26 H 0.160 0.840 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.839 3.202 0.438 3.339 hybrid contribution -0.088 1.115 -0.894 1.432 sum -0.927 4.316 -0.456 4.438 Atomic orbital electron populations 1.20335 0.86683 1.02791 1.03729 1.26195 1.04205 1.03923 1.06569 1.19826 0.91773 0.99918 1.09155 1.20658 0.96863 0.94246 0.98921 1.24785 0.98149 0.99492 1.22925 1.17363 0.87433 0.81918 0.75842 1.90450 1.41836 1.59343 1.54484 1.47472 1.08409 1.06009 1.68164 1.19515 0.82993 0.89472 0.96828 1.21374 1.13747 1.29795 0.92953 0.92930 1.25340 0.96493 0.94448 0.98987 1.69945 1.24241 1.31791 1.26963 0.85985 0.78613 0.78883 0.80888 1.19852 1.19811 1.19320 1.21849 0.79706 0.98575 1.03974 1.24071 0.97477 1.02298 0.99251 1.23159 1.03700 1.03855 0.91581 1.86356 0.90742 0.98769 1.60439 0.92110 0.89283 0.89790 0.83192 0.83999 0.94094 0.94110 0.91558 0.84201 0.86021 0.86916 0.86212 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.07 10.33 71.24 0.74 -1.34 16 2 C -0.29 -10.05 6.28 24.68 0.15 -9.90 16 3 C -0.18 -5.95 10.00 21.08 0.21 -5.74 16 4 C -0.07 -2.73 10.02 21.72 0.22 -2.51 16 5 C -0.33 -14.43 6.20 24.08 0.15 -14.28 16 6 C 0.58 26.74 7.35 86.42 0.63 27.37 16 7 O -0.58 -27.09 12.77 -4.36 -0.06 -27.15 16 8 N -0.57 -25.34 2.84 -806.91 -2.29 -27.63 16 9 C 0.23 10.93 4.76 85.63 0.41 11.34 16 10 C -0.54 -26.13 6.59 25.60 0.17 -25.96 16 11 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 12 C 0.05 2.51 4.85 84.66 0.41 2.92 16 13 N -0.89 -43.91 13.29 21.45 0.28 -43.63 16 14 Si 0.93 38.65 29.54 68.60 2.03 40.67 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 18 C 0.06 2.40 6.62 44.99 0.30 2.70 16 19 C -0.19 -6.66 9.64 30.62 0.30 -6.36 16 20 C -0.18 -6.46 9.91 30.62 0.30 -6.16 16 21 S 0.36 15.01 15.44 -56.49 -0.87 14.14 16 22 H 0.06 1.66 8.11 -2.39 -0.02 1.64 16 23 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 24 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 26 H 0.14 5.07 8.06 -2.91 -0.02 5.05 16 27 H 0.04 1.97 7.96 -2.38 -0.02 1.95 16 28 H 0.04 1.99 4.92 -19.11 -0.09 1.90 16 29 H 0.27 12.83 8.31 -92.71 -0.77 12.06 16 30 H 0.14 4.73 8.05 -2.39 -0.02 4.72 16 31 H 0.12 4.91 4.90 -30.51 -0.15 4.76 16 32 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.06 2.62 7.88 -2.39 -0.02 2.60 16 Total: -1.00 -54.96 294.37 3.96 -50.99 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.88 Total: 20.51 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 3.99 Total: -27.92 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -2.00 Total: -71.26 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.06 Total: -27.15 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 16 Polarization: 15.01 SS G_CDS: -0.87 Total: 14.14 kcal Total: -54.96 3.96 -50.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359423.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.115 kcal (2) G-P(sol) polarization free energy of solvation -54.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds