Wall clock time and date at job start Mon Mar 30 2020 06:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48495 * 109.47444 * 270.00268 * 3 2 1 5 5 H 1.48505 * 109.46992 * 30.00325 * 3 2 1 6 6 H 1.48500 * 109.47335 * 150.00170 * 3 2 1 7 7 C 1.37880 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99916 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99654 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47350 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00130 * 89.99579 * 10 9 7 12 12 O 1.21277 * 120.00003 * 185.93566 * 11 10 9 13 13 C 1.50700 * 119.99704 * 5.94158 * 11 10 9 14 14 C 1.50703 * 109.46801 * 175.01763 * 13 11 10 15 15 C 1.38423 * 122.54340 * 269.99711 * 14 13 11 16 16 C 1.33378 * 114.92517 * 179.97438 * 15 14 13 17 17 S 1.75886 * 109.59229 * 359.75874 * 16 15 14 18 18 C 1.33395 * 122.53972 * 89.97535 * 14 13 11 19 19 C 1.46504 * 120.00271 * 270.00633 * 10 9 7 20 20 C 1.52992 * 117.50295 * 196.47284 * 19 10 9 21 21 C 1.52996 * 117.50277 * 127.80514 * 19 10 9 22 22 H 0.97001 * 120.00374 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47480 * 60.00308 * 9 7 2 24 24 H 1.09001 * 109.47447 * 300.00021 * 9 7 2 25 25 H 1.08992 * 109.47205 * 55.02078 * 13 11 10 26 26 H 1.09000 * 109.47102 * 295.01641 * 13 11 10 27 27 H 1.07999 * 122.53184 * 359.95984 * 15 14 13 28 28 H 1.07997 * 125.20758 * 180.02562 * 16 15 14 29 29 H 1.07996 * 125.20037 * 359.97438 * 18 14 13 30 30 H 1.09003 * 115.54573 * 342.13333 * 19 10 9 31 31 H 1.09004 * 117.49882 * 359.97438 * 20 19 10 32 32 H 1.08998 * 117.50453 * 145.01691 * 20 19 10 33 33 H 1.09003 * 117.49516 * 214.97957 * 21 19 10 34 34 H 1.09002 * 117.49973 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6410 -4.1248 1.1667 12 8 3.5084 -4.9724 1.1694 13 6 2.0526 -3.6444 2.4682 14 6 2.6206 -4.4541 3.6054 15 6 2.0292 -5.6215 4.0563 16 6 2.6598 -6.2158 5.0703 17 16 4.0873 -5.2843 5.5042 18 6 3.7316 -4.1003 4.2533 19 6 2.6791 -4.1694 -1.2693 20 6 3.3485 -5.5446 -1.2304 21 6 4.1918 -4.2888 -1.4650 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 0.9695 -3.7632 2.4432 26 1 2.2996 -2.5926 2.6123 27 1 1.1253 -6.0207 3.6203 28 1 2.3448 -7.1314 5.5487 29 1 4.3248 -3.2236 4.0391 30 1 2.0759 -3.9279 -2.1444 31 1 3.4350 -6.0350 -0.2608 32 1 3.1860 -6.2077 -2.0801 33 1 4.5837 -4.1262 -2.4691 34 1 4.8329 -3.9527 -0.6500 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042548823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:51 Heat of formation + Delta-G solvation = 33.082143 kcal Electronic energy + Delta-G solvation = -17834.711002 eV Core-core repulsion = 15053.673127 eV Total energy + Delta-G solvation = -2781.037875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74950 -37.76124 -35.56174 -34.20250 -32.23584 -30.58110 -27.70260 -27.01933 -23.45045 -22.83465 -21.84076 -21.75369 -18.83268 -18.15500 -17.28176 -16.66287 -16.06428 -15.57784 -14.88542 -14.48321 -14.35326 -14.04748 -13.00403 -12.77816 -12.69702 -12.48240 -12.36638 -12.11645 -11.83852 -11.50141 -11.31062 -11.15590 -10.86020 -10.73860 -10.56237 -10.45239 -10.25676 -9.69947 -9.59564 -8.79817 -8.59472 -8.50598 -8.09453 -7.50981 -6.20896 -4.28437 1.26928 1.89718 2.19811 2.94843 3.21268 3.27921 3.29294 3.35133 3.92217 4.31502 4.58558 5.10448 5.11885 5.28879 5.30646 5.52307 5.62642 5.64746 5.69945 5.80864 5.93038 6.16737 6.21404 6.24522 6.27353 6.56878 6.67431 6.76931 6.79960 6.92505 7.13169 7.60941 7.74882 8.02370 8.31264 8.77508 9.01595 9.39705 10.85490 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.006362 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.873400 B = 4400.309206 C = 5384.395601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.238 3.762 10 N -0.570 5.570 11 C 0.521 3.479 12 O -0.558 6.558 13 C -0.080 4.080 14 C -0.074 4.074 15 C -0.116 4.116 16 C -0.218 4.218 17 S 0.070 5.930 18 C -0.194 4.194 19 C 0.090 3.910 20 C -0.203 4.203 21 C -0.188 4.188 22 H 0.266 0.734 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.137 0.863 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.152 -8.760 6.052 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.298 5.298 11 C 0.310 3.690 12 O -0.439 6.439 13 C -0.122 4.122 14 C -0.086 4.086 15 C -0.147 4.147 16 C -0.353 4.353 17 S 0.332 5.668 18 C -0.329 4.329 19 C -0.016 4.016 20 C -0.241 4.241 21 C -0.227 4.227 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.155 0.845 28 H 0.177 0.823 29 H 0.179 0.821 30 H 0.139 0.861 31 H 0.151 0.849 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.545 -9.213 7.153 12.518 hybrid contribution -0.726 1.343 -1.274 1.988 sum 3.819 -7.870 5.879 10.540 Atomic orbital electron populations 1.69912 1.05990 1.27364 1.49752 1.24933 0.94848 0.99273 0.94724 0.86514 0.79847 0.82913 0.78334 1.20492 1.21032 1.19787 1.21493 0.93672 0.90383 1.51987 0.92042 1.19482 0.87399 0.82442 0.98842 1.47661 1.44949 1.34097 1.03111 1.20327 0.82143 0.81304 0.85228 1.90458 1.32109 1.34084 1.87283 1.20402 1.01318 1.01017 0.89511 1.18543 0.95904 0.96263 0.97885 1.20059 1.01776 0.95638 0.97216 1.25407 1.00197 1.05299 1.04400 1.83995 1.27283 1.18948 1.36530 1.25375 1.01721 1.04392 1.01407 1.21486 0.93942 0.97813 0.88329 1.23799 1.04106 0.91410 1.04736 1.23108 0.95104 1.02755 1.01727 0.92479 0.94577 0.94037 0.88285 0.87008 0.84522 0.82265 0.82079 0.86068 0.84859 0.90305 0.89601 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.16 13.29 55.43 0.74 -23.42 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -13.77 9.39 -34.44 -0.32 -14.09 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.24 5.52 5.10 -5.20 -0.03 5.49 16 10 N -0.57 -11.92 2.82 -167.48 -0.47 -12.39 16 11 C 0.52 10.57 7.45 -10.98 -0.08 10.49 16 12 O -0.56 -11.99 11.79 5.56 0.07 -11.92 16 13 C -0.08 -1.43 4.50 -29.03 -0.13 -1.56 16 14 C -0.07 -1.21 4.30 -106.25 -0.46 -1.67 16 15 C -0.12 -1.70 9.98 -41.21 -0.41 -2.12 16 16 C -0.22 -2.84 11.23 29.03 0.33 -2.51 16 17 S 0.07 0.92 23.34 -107.50 -2.51 -1.59 16 18 C -0.19 -3.02 10.98 29.04 0.32 -2.70 16 19 C 0.09 1.71 6.62 -67.93 -0.45 1.26 16 20 C -0.20 -3.55 9.63 -26.70 -0.26 -3.81 16 21 C -0.19 -3.41 9.88 -26.69 -0.26 -3.68 16 22 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 24 H 0.04 0.97 6.31 -51.93 -0.33 0.64 16 25 H 0.10 1.65 7.34 -51.93 -0.38 1.27 16 26 H 0.11 2.08 8.12 -51.93 -0.42 1.66 16 27 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.16 2.39 8.06 -52.49 -0.42 1.96 16 30 H 0.12 2.17 8.09 -51.93 -0.42 1.74 16 31 H 0.13 2.62 5.22 -52.10 -0.27 2.35 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.09 1.87 7.59 -51.93 -0.39 1.48 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -28.07 303.89 -8.77 -36.84 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.29 Total: 5.81 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.85 Total: -13.29 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.26 Total: -35.81 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.07 Total: -11.92 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.51 Total: -1.59 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.07 -8.77 -36.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.924 kcal (2) G-P(sol) polarization free energy of solvation -28.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds