Wall clock time and date at job start Mon Mar 30 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48495 * 109.47444 * 270.00268 * 3 2 1 5 5 H 1.48505 * 109.46992 * 30.00325 * 3 2 1 6 6 H 1.48500 * 109.47335 * 150.00170 * 3 2 1 7 7 C 1.37880 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99916 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99654 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47350 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00130 * 89.99579 * 10 9 7 12 12 O 1.21277 * 120.00003 * 185.93566 * 11 10 9 13 13 C 1.50700 * 119.99704 * 5.94158 * 11 10 9 14 14 C 1.50703 * 109.46801 * 175.01763 * 13 11 10 15 15 C 1.38423 * 122.54340 * 269.99711 * 14 13 11 16 16 C 1.33378 * 114.92517 * 179.97438 * 15 14 13 17 17 S 1.75886 * 109.59229 * 359.75874 * 16 15 14 18 18 C 1.33395 * 122.53972 * 89.97535 * 14 13 11 19 19 C 1.46504 * 120.00271 * 270.00633 * 10 9 7 20 20 C 1.52992 * 117.50295 * 196.47284 * 19 10 9 21 21 C 1.52996 * 117.50277 * 127.80514 * 19 10 9 22 22 H 0.97001 * 120.00374 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47480 * 60.00308 * 9 7 2 24 24 H 1.09001 * 109.47447 * 300.00021 * 9 7 2 25 25 H 1.08992 * 109.47205 * 55.02078 * 13 11 10 26 26 H 1.09000 * 109.47102 * 295.01641 * 13 11 10 27 27 H 1.07999 * 122.53184 * 359.95984 * 15 14 13 28 28 H 1.07997 * 125.20758 * 180.02562 * 16 15 14 29 29 H 1.07996 * 125.20037 * 359.97438 * 18 14 13 30 30 H 1.09003 * 115.54573 * 342.13333 * 19 10 9 31 31 H 1.09004 * 117.49882 * 359.97438 * 20 19 10 32 32 H 1.08998 * 117.50453 * 145.01691 * 20 19 10 33 33 H 1.09003 * 117.49516 * 214.97957 * 21 19 10 34 34 H 1.09002 * 117.49973 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6410 -4.1248 1.1667 12 8 3.5084 -4.9724 1.1694 13 6 2.0526 -3.6444 2.4682 14 6 2.6206 -4.4541 3.6054 15 6 2.0292 -5.6215 4.0563 16 6 2.6598 -6.2158 5.0703 17 16 4.0873 -5.2843 5.5042 18 6 3.7316 -4.1003 4.2533 19 6 2.6791 -4.1694 -1.2693 20 6 3.3485 -5.5446 -1.2304 21 6 4.1918 -4.2888 -1.4650 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 0.9695 -3.7632 2.4432 26 1 2.2996 -2.5926 2.6123 27 1 1.1253 -6.0207 3.6203 28 1 2.3448 -7.1314 5.5487 29 1 4.3248 -3.2236 4.0391 30 1 2.0759 -3.9279 -2.1444 31 1 3.4350 -6.0350 -0.2608 32 1 3.1860 -6.2077 -2.0801 33 1 4.5837 -4.1262 -2.4691 34 1 4.8329 -3.9527 -0.6500 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042548823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:50 Heat of formation + Delta-G solvation = 19.168035 kcal Electronic energy + Delta-G solvation = -17835.314363 eV Core-core repulsion = 15053.673127 eV Total energy + Delta-G solvation = -2781.641236 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.30506 -38.99193 -37.09773 -35.95340 -34.11794 -31.85766 -29.14896 -28.77404 -24.96204 -24.50799 -23.25118 -23.15700 -20.23232 -19.48196 -18.74321 -18.32126 -17.76373 -17.07836 -16.35252 -16.22483 -15.82850 -15.47772 -14.53303 -14.34693 -13.99958 -13.87084 -13.81021 -13.54875 -13.45449 -12.96020 -12.91939 -12.69437 -12.58887 -12.39006 -12.15502 -11.98665 -11.68242 -11.43533 -11.18967 -10.63409 -10.30662 -9.65854 -9.24461 -9.16109 -8.20227 -6.35069 0.13716 0.80615 1.08775 1.40255 1.42639 1.51391 1.70167 1.75097 2.32327 2.46245 3.08498 3.12360 3.79006 3.95224 4.05502 4.09552 4.24068 4.28160 4.38563 4.57038 4.70684 4.74838 4.78792 4.84820 4.98816 5.10686 5.15217 5.20752 5.43325 5.49801 5.59827 5.68357 5.98333 6.05843 6.56557 6.81812 7.31933 7.42758 8.84360 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.006362 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.873400 B = 4400.309206 C = 5384.395601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.048 0.952 9 C 0.252 3.748 10 N -0.575 5.575 11 C 0.517 3.483 12 O -0.570 6.570 13 C -0.074 4.074 14 C -0.089 4.089 15 C -0.139 4.139 16 C -0.207 4.207 17 S 0.109 5.891 18 C -0.220 4.220 19 C 0.064 3.936 20 C -0.183 4.183 21 C -0.186 4.186 22 H 0.269 0.731 23 H 0.023 0.977 24 H 0.038 0.962 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.148 0.852 28 H 0.193 0.807 29 H 0.159 0.841 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -9.513 6.382 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.066 0.934 9 C 0.132 3.868 10 N -0.304 5.304 11 C 0.306 3.694 12 O -0.452 6.452 13 C -0.116 4.116 14 C -0.102 4.102 15 C -0.170 4.170 16 C -0.342 4.342 17 S 0.372 5.628 18 C -0.355 4.355 19 C -0.040 4.040 20 C -0.221 4.221 21 C -0.225 4.225 22 H 0.078 0.922 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.165 0.835 28 H 0.210 0.790 29 H 0.176 0.824 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.025 -9.979 7.484 13.448 hybrid contribution -0.828 1.514 -1.345 2.188 sum 4.197 -8.465 6.139 11.268 Atomic orbital electron populations 1.69987 1.07061 1.28222 1.50449 1.25587 0.95554 1.02077 0.94398 0.85623 0.78622 0.79480 0.78372 1.20063 1.20385 1.19851 1.21636 0.93109 0.91716 1.51877 0.93389 1.19148 0.87360 0.82452 0.97881 1.47639 1.44785 1.33719 1.04238 1.20707 0.81931 0.81003 0.85724 1.90451 1.32584 1.34611 1.87566 1.20309 1.01714 1.00402 0.89200 1.18583 0.96657 0.97156 0.97821 1.20177 1.02810 0.95575 0.98394 1.25850 0.99321 1.05769 1.03268 1.83834 1.26858 1.17443 1.34669 1.25558 1.01840 1.05393 1.02730 1.21792 0.94801 0.99421 0.88029 1.23727 1.02479 0.90910 1.04948 1.23110 0.94016 1.03139 1.02225 0.92235 0.95895 0.94412 0.87600 0.88432 0.83486 0.79021 0.82361 0.85012 0.86877 0.87053 0.86937 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.86 13.29 21.45 0.28 -49.58 16 2 C 0.02 1.27 5.46 84.66 0.46 1.73 16 3 Si 0.95 41.75 29.54 68.60 2.03 43.77 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.54 -28.31 9.39 25.60 0.24 -28.07 16 8 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 9 C 0.25 11.92 5.10 85.63 0.44 12.35 16 10 N -0.58 -24.38 2.82 -802.17 -2.26 -26.65 16 11 C 0.52 21.30 7.45 87.66 0.65 21.95 16 12 O -0.57 -24.71 11.79 -3.02 -0.04 -24.74 16 13 C -0.07 -2.71 4.50 29.10 0.13 -2.58 16 14 C -0.09 -2.94 4.30 -20.92 -0.09 -3.03 16 15 C -0.14 -3.94 9.98 21.21 0.21 -3.73 16 16 C -0.21 -4.90 11.23 66.72 0.75 -4.15 16 17 S 0.11 2.68 23.34 -56.49 -1.32 1.36 16 18 C -0.22 -6.82 10.98 66.72 0.73 -6.09 16 19 C 0.06 2.42 6.62 44.99 0.30 2.72 16 20 C -0.18 -6.16 9.63 30.62 0.29 -5.86 16 21 C -0.19 -6.59 9.88 30.62 0.30 -6.29 16 22 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 23 H 0.02 1.14 8.03 -2.39 -0.02 1.12 16 24 H 0.04 1.81 6.31 -2.39 -0.02 1.79 16 25 H 0.11 3.62 7.34 -2.39 -0.02 3.61 16 26 H 0.10 3.80 8.12 -2.39 -0.02 3.78 16 27 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 28 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.16 4.82 8.06 -2.91 -0.02 4.79 16 30 H 0.13 4.61 8.09 -2.39 -0.02 4.59 16 31 H 0.11 4.37 5.22 -5.10 -0.03 4.34 16 32 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.07 2.72 7.59 -2.39 -0.02 2.70 16 Total: -1.00 -59.06 303.89 4.20 -54.87 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 1.08 Total: 22.00 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.42 Total: -21.03 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -1.98 Total: -76.23 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.04 Total: -24.74 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.32 Total: 1.36 kcal Total: -59.06 4.20 -54.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.034 kcal (2) G-P(sol) polarization free energy of solvation -59.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds