Wall clock time and date at job start Mon Mar 30 2020 06:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00403 * 2 1 4 4 H 1.48499 * 109.46895 * 270.00653 * 3 2 1 5 5 H 1.48500 * 109.46693 * 30.00056 * 3 2 1 6 6 H 1.48491 * 109.47355 * 150.00236 * 3 2 1 7 7 C 1.37881 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00173 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00100 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47006 * 184.55622 * 9 7 2 11 11 C 1.46905 * 111.00097 * 158.98311 * 10 9 7 12 12 C 1.50699 * 109.47188 * 190.00307 * 11 10 9 13 13 O 1.21440 * 120.00232 * 359.97438 * 12 11 10 14 14 C 1.41235 * 120.00152 * 180.02562 * 12 11 10 15 15 C 1.37181 * 125.48177 * 179.97438 * 14 12 11 16 16 C 1.37200 * 113.24089 * 179.97438 * 15 14 12 17 17 C 1.34024 * 115.14765 * 359.97438 * 16 15 14 18 18 S 1.70603 * 110.99916 * 359.73074 * 17 16 15 19 19 C 1.46904 * 111.00195 * 282.93401 * 10 9 7 20 20 C 1.53001 * 117.49731 * 7.83814 * 19 10 9 21 21 C 1.52998 * 117.49877 * 299.17861 * 19 10 9 22 22 H 0.96999 * 119.99552 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47011 * 64.55770 * 9 7 2 24 24 H 1.08996 * 109.46881 * 304.55202 * 9 7 2 25 25 H 1.08999 * 109.46391 * 309.99846 * 11 10 9 26 26 H 1.09000 * 109.47276 * 69.99622 * 11 10 9 27 27 H 1.07995 * 123.38222 * 359.96326 * 15 14 12 28 28 H 1.08003 * 122.42437 * 180.02562 * 16 15 14 29 29 H 1.08008 * 124.49462 * 180.02562 * 17 16 15 30 30 H 1.09003 * 115.55222 * 153.50919 * 19 10 9 31 31 H 1.09003 * 117.49467 * 0.02562 * 20 19 10 32 32 H 1.08999 * 117.49593 * 145.01505 * 20 19 10 33 33 H 1.09003 * 117.50052 * 214.97684 * 21 19 10 34 34 H 1.09003 * 117.49840 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2017 -3.6136 0.1089 11 6 1.5369 -4.8261 0.6047 12 6 2.5742 -5.8677 0.9366 13 8 3.7529 -5.6239 0.7752 14 6 2.1755 -7.1279 1.4342 15 6 3.0206 -8.1547 1.7711 16 6 2.3635 -9.2685 2.2294 17 6 1.0279 -9.1654 2.2699 18 16 0.5165 -7.6299 1.7303 19 6 2.8670 -3.8662 -1.1763 20 6 2.6226 -2.8649 -2.3071 21 6 1.9846 -4.2551 -2.3641 22 1 -0.4849 0.8401 0.0004 23 1 0.6866 -2.5929 -0.9283 24 1 0.5649 -2.5225 0.8461 25 1 0.9639 -4.5858 1.5002 26 1 0.8664 -5.2126 -0.1629 27 1 4.0953 -8.0926 1.6841 28 1 2.8849 -10.1632 2.5361 29 1 0.3638 -9.9487 2.6046 30 1 3.8550 -4.3222 -1.1127 31 1 1.9685 -2.0185 -2.0972 32 1 3.4497 -2.6624 -2.9875 33 1 2.3922 -4.9668 -3.0822 34 1 0.9105 -4.3241 -2.1919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050146516.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:46 Heat of formation + Delta-G solvation = 42.076803 kcal Electronic energy + Delta-G solvation = -17581.672862 eV Core-core repulsion = 14801.025024 eV Total energy + Delta-G solvation = -2780.647838 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.65347 -38.00132 -37.01752 -33.09522 -32.34785 -30.48245 -28.17530 -26.06369 -24.27316 -22.69380 -21.64981 -20.90610 -19.27855 -18.82085 -17.35376 -16.22930 -16.07631 -15.84857 -14.94260 -14.74297 -14.42191 -14.11366 -13.59791 -13.09900 -12.91877 -12.82757 -12.33590 -12.18734 -12.11937 -11.43776 -11.11599 -10.96901 -10.82184 -10.68890 -10.30322 -9.96314 -9.87722 -9.56708 -9.30897 -9.02540 -8.93016 -8.71683 -8.42408 -7.22365 -6.01574 -4.00670 0.29214 1.43014 1.82330 2.20605 3.08585 3.34438 3.40752 3.46846 4.24417 4.48607 4.58261 4.79884 4.96941 5.20674 5.31417 5.33475 5.50248 5.64626 5.70368 5.80495 5.84791 5.86740 5.92938 6.15285 6.22205 6.22783 6.65305 6.74579 7.08933 7.18003 7.38108 7.80938 7.88773 8.08723 8.18891 8.51130 9.07755 9.61783 11.08715 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030957 B = 0.004751 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.252140 B = 5891.650841 C = 6139.337323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.494 4.494 8 H 0.066 0.934 9 C 0.184 3.816 10 N -0.491 5.491 11 C 0.010 3.990 12 C 0.420 3.580 13 O -0.429 6.429 14 C -0.288 4.288 15 C -0.058 4.058 16 C -0.156 4.156 17 C -0.238 4.238 18 S 0.228 5.772 19 C 0.037 3.963 20 C -0.172 4.172 21 C -0.236 4.236 22 H 0.261 0.739 23 H 0.001 0.999 24 H 0.031 0.969 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.152 0.848 28 H 0.142 0.858 29 H 0.167 0.833 30 H 0.114 0.886 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -17.610 2.181 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.533 4.533 8 H 0.084 0.916 9 C 0.060 3.940 10 N -0.213 5.213 11 C -0.119 4.119 12 C 0.295 3.705 13 O -0.304 6.304 14 C -0.406 4.406 15 C -0.091 4.091 16 C -0.187 4.187 17 C -0.376 4.376 18 S 0.496 5.504 19 C -0.072 4.072 20 C -0.209 4.209 21 C -0.276 4.276 22 H 0.070 0.930 23 H 0.019 0.981 24 H 0.049 0.951 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.169 0.831 28 H 0.159 0.841 29 H 0.184 0.816 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.539 -16.515 2.306 16.684 hybrid contribution 0.991 -0.256 -0.317 1.072 sum 0.452 -16.771 1.988 16.895 Atomic orbital electron populations 1.69953 1.06012 1.26768 1.51358 1.24968 0.94840 0.99219 0.95659 0.86506 0.79898 0.83073 0.78060 1.20736 1.21377 1.19728 1.21124 0.93799 0.89359 1.48971 0.91588 1.19939 0.90213 0.87537 0.96317 1.62033 1.31718 1.03080 1.24483 1.22436 0.95307 0.92556 1.01586 1.20267 0.90627 0.85124 0.74439 1.90538 1.19699 1.79403 1.40764 1.24427 0.97941 1.02298 1.15983 1.21001 1.01339 0.91134 0.95635 1.20031 0.93434 1.00332 1.04893 1.25507 1.00277 1.03648 1.08166 1.83233 1.05637 1.04634 1.56886 1.22700 0.98006 1.02972 0.83559 1.23533 1.03309 0.94249 0.99761 1.23370 0.99449 1.00294 1.04474 0.92966 0.98131 0.95127 0.88088 0.92307 0.83089 0.84054 0.81573 0.86803 0.84770 0.90079 0.90130 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.49 -13.69 7.00 -34.44 -0.24 -13.93 16 8 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.18 4.69 4.29 -4.98 -0.02 4.67 16 10 N -0.49 -10.95 4.38 -229.52 -1.01 -11.96 16 11 C 0.01 0.18 4.65 -4.97 -0.02 0.16 16 12 C 0.42 7.21 6.71 -33.17 -0.22 6.99 16 13 O -0.43 -8.57 15.06 5.42 0.08 -8.48 16 14 C -0.29 -3.97 6.23 -38.83 -0.24 -4.22 16 15 C -0.06 -0.70 9.95 -40.34 -0.40 -1.11 16 16 C -0.16 -1.50 10.14 -41.44 -0.42 -1.92 16 17 C -0.24 -2.13 10.93 29.25 0.32 -1.81 16 18 S 0.23 2.44 22.42 -107.50 -2.41 0.03 16 19 C 0.04 0.77 5.15 -67.71 -0.35 0.42 16 20 C -0.17 -3.54 9.01 -26.69 -0.24 -3.78 16 21 C -0.24 -4.36 9.25 -26.69 -0.25 -4.61 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.00 0.03 5.73 -51.93 -0.30 -0.27 16 24 H 0.03 0.83 7.71 -51.93 -0.40 0.43 16 25 H 0.10 1.76 7.82 -51.93 -0.41 1.35 16 26 H 0.06 1.00 7.14 -51.93 -0.37 0.63 16 27 H 0.15 1.76 8.02 -52.49 -0.42 1.34 16 28 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.11 2.38 6.99 -51.93 -0.36 2.02 16 31 H 0.13 3.22 4.92 -51.93 -0.26 2.96 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.59 7.18 -51.93 -0.37 1.22 16 LS Contribution 298.79 15.07 4.50 4.50 Total: -1.00 -30.81 298.79 -9.42 -40.23 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.12 Total: 2.18 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.19 Total: -17.72 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.27 Total: -37.41 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.41 Total: 0.03 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.81 -9.42 -40.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050146516.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.310 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds