Wall clock time and date at job start Mon Mar 30 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00403 * 2 1 4 4 H 1.48499 * 109.46895 * 270.00653 * 3 2 1 5 5 H 1.48500 * 109.46693 * 30.00056 * 3 2 1 6 6 H 1.48491 * 109.47355 * 150.00236 * 3 2 1 7 7 C 1.37881 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00173 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00100 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47006 * 184.55622 * 9 7 2 11 11 C 1.46905 * 111.00097 * 158.98311 * 10 9 7 12 12 C 1.50699 * 109.47188 * 190.00307 * 11 10 9 13 13 O 1.21440 * 120.00232 * 359.97438 * 12 11 10 14 14 C 1.41235 * 120.00152 * 180.02562 * 12 11 10 15 15 C 1.37181 * 125.48177 * 179.97438 * 14 12 11 16 16 C 1.37200 * 113.24089 * 179.97438 * 15 14 12 17 17 C 1.34024 * 115.14765 * 359.97438 * 16 15 14 18 18 S 1.70603 * 110.99916 * 359.73074 * 17 16 15 19 19 C 1.46904 * 111.00195 * 282.93401 * 10 9 7 20 20 C 1.53001 * 117.49731 * 7.83814 * 19 10 9 21 21 C 1.52998 * 117.49877 * 299.17861 * 19 10 9 22 22 H 0.96999 * 119.99552 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47011 * 64.55770 * 9 7 2 24 24 H 1.08996 * 109.46881 * 304.55202 * 9 7 2 25 25 H 1.08999 * 109.46391 * 309.99846 * 11 10 9 26 26 H 1.09000 * 109.47276 * 69.99622 * 11 10 9 27 27 H 1.07995 * 123.38222 * 359.96326 * 15 14 12 28 28 H 1.08003 * 122.42437 * 180.02562 * 16 15 14 29 29 H 1.08008 * 124.49462 * 180.02562 * 17 16 15 30 30 H 1.09003 * 115.55222 * 153.50919 * 19 10 9 31 31 H 1.09003 * 117.49467 * 0.02562 * 20 19 10 32 32 H 1.08999 * 117.49593 * 145.01505 * 20 19 10 33 33 H 1.09003 * 117.50052 * 214.97684 * 21 19 10 34 34 H 1.09003 * 117.49840 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2017 -3.6136 0.1089 11 6 1.5369 -4.8261 0.6047 12 6 2.5742 -5.8677 0.9366 13 8 3.7529 -5.6239 0.7752 14 6 2.1755 -7.1279 1.4342 15 6 3.0206 -8.1547 1.7711 16 6 2.3635 -9.2685 2.2294 17 6 1.0279 -9.1654 2.2699 18 16 0.5165 -7.6299 1.7303 19 6 2.8670 -3.8662 -1.1763 20 6 2.6226 -2.8649 -2.3071 21 6 1.9846 -4.2551 -2.3641 22 1 -0.4849 0.8401 0.0004 23 1 0.6866 -2.5929 -0.9283 24 1 0.5649 -2.5225 0.8461 25 1 0.9639 -4.5858 1.5002 26 1 0.8664 -5.2126 -0.1629 27 1 4.0953 -8.0926 1.6841 28 1 2.8849 -10.1632 2.5361 29 1 0.3638 -9.9487 2.6046 30 1 3.8550 -4.3222 -1.1127 31 1 1.9685 -2.0185 -2.0972 32 1 3.4497 -2.6624 -2.9875 33 1 2.3922 -4.9668 -3.0822 34 1 0.9105 -4.3241 -2.1919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050146516.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:45 Heat of formation + Delta-G solvation = 23.195444 kcal Electronic energy + Delta-G solvation = -17582.491619 eV Core-core repulsion = 14801.025024 eV Total energy + Delta-G solvation = -2781.466595 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.01942 -39.41918 -38.12312 -35.03474 -34.15300 -31.64980 -29.85739 -27.56632 -25.44211 -24.63561 -23.17149 -22.16355 -20.58181 -20.08659 -18.66110 -18.17579 -17.69678 -16.91298 -16.59192 -16.16097 -16.03948 -15.35196 -15.06427 -14.59724 -14.29609 -13.95724 -13.67860 -13.57813 -13.29879 -13.10466 -12.85706 -12.68878 -12.61738 -12.07175 -11.88310 -11.82801 -11.59002 -11.34558 -11.06326 -10.59500 -10.55709 -9.85653 -9.54168 -8.96434 -8.16608 -6.22964 -0.66621 0.55689 1.00030 1.25433 1.41842 1.42621 1.54553 1.98811 2.41793 2.89136 3.03188 3.15142 3.42497 4.04564 4.09957 4.13669 4.18436 4.31644 4.35488 4.42053 4.44357 4.58622 4.73845 4.98377 5.03241 5.06095 5.17543 5.26990 5.27766 5.38387 5.56365 5.70047 6.06908 6.35043 6.47759 6.67842 6.89179 7.43477 8.93206 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030957 B = 0.004751 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.252140 B = 5891.650841 C = 6139.337323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.504 4.504 8 H 0.052 0.948 9 C 0.203 3.797 10 N -0.510 5.510 11 C 0.008 3.992 12 C 0.429 3.571 13 O -0.472 6.472 14 C -0.335 4.335 15 C -0.047 4.047 16 C -0.165 4.165 17 C -0.210 4.210 18 S 0.241 5.759 19 C 0.026 3.974 20 C -0.183 4.183 21 C -0.207 4.207 22 H 0.264 0.736 23 H -0.014 1.014 24 H 0.007 0.993 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.172 0.828 29 H 0.204 0.796 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 -19.653 2.362 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.190 4.190 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.542 4.542 8 H 0.071 0.929 9 C 0.078 3.922 10 N -0.232 5.232 11 C -0.120 4.120 12 C 0.308 3.692 13 O -0.350 6.350 14 C -0.454 4.454 15 C -0.082 4.082 16 C -0.195 4.195 17 C -0.348 4.348 18 S 0.509 5.491 19 C -0.083 4.083 20 C -0.220 4.220 21 C -0.246 4.246 22 H 0.073 0.927 23 H 0.004 0.996 24 H 0.025 0.975 25 H 0.121 0.879 26 H 0.090 0.910 27 H 0.166 0.834 28 H 0.189 0.811 29 H 0.221 0.779 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.649 -18.577 2.486 18.754 hybrid contribution 0.960 0.225 -0.325 1.038 sum 0.311 -18.352 2.161 18.482 Atomic orbital electron populations 1.70051 1.07314 1.27714 1.52127 1.25722 0.95640 1.02462 0.95192 0.85517 0.78520 0.79027 0.78393 1.19793 1.20687 1.19684 1.21280 0.93225 0.90796 1.48942 0.92924 1.19557 0.89947 0.88334 0.94373 1.61859 1.31400 1.04136 1.25845 1.22527 0.96040 0.91613 1.01859 1.20198 0.89540 0.85944 0.73513 1.90514 1.20794 1.80392 1.43344 1.24113 1.00321 1.01529 1.19405 1.21242 1.01399 0.91416 0.94094 1.20274 0.93779 1.00507 1.04925 1.26002 1.00576 1.03119 1.05146 1.83213 1.03480 1.05726 1.56651 1.22653 0.98478 1.03735 0.83448 1.23407 1.03875 0.94066 1.00642 1.23373 0.98885 0.99145 1.03188 0.92733 0.99610 0.97462 0.87922 0.90985 0.83364 0.81052 0.77927 0.86900 0.88340 0.87997 0.86990 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.29 21.45 0.28 -54.90 16 2 C 0.01 0.44 5.46 84.66 0.46 0.91 16 3 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.50 -28.81 7.00 25.60 0.18 -28.63 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.20 10.77 4.29 85.56 0.37 11.13 16 10 N -0.51 -23.49 4.38 -880.06 -3.86 -27.35 16 11 C 0.01 0.30 4.65 85.56 0.40 0.70 16 12 C 0.43 14.97 6.71 26.42 0.18 15.15 16 13 O -0.47 -19.39 15.06 -3.53 -0.05 -19.44 16 14 C -0.34 -9.02 6.23 22.76 0.14 -8.88 16 15 C -0.05 -1.07 9.95 21.78 0.22 -0.85 16 16 C -0.17 -2.61 10.14 21.07 0.21 -2.39 16 17 C -0.21 -2.92 10.93 66.86 0.73 -2.19 16 18 S 0.24 4.66 22.42 -56.49 -1.27 3.39 16 19 C 0.03 1.10 5.15 44.91 0.23 1.33 16 20 C -0.18 -7.60 9.01 30.62 0.28 -7.32 16 21 C -0.21 -7.47 9.25 30.62 0.28 -7.18 16 22 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 23 H -0.01 -0.75 5.73 -2.39 -0.01 -0.77 16 24 H 0.01 0.41 7.71 -2.39 -0.02 0.39 16 25 H 0.10 3.71 7.82 -2.39 -0.02 3.69 16 26 H 0.07 2.46 7.14 -2.39 -0.02 2.44 16 27 H 0.15 3.35 8.02 -2.91 -0.02 3.33 16 28 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 29 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.11 4.79 6.99 -2.39 -0.02 4.78 16 31 H 0.10 4.88 4.92 -2.39 -0.01 4.87 16 32 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.11 3.35 8.14 -2.39 -0.02 3.34 16 34 H 0.08 2.97 7.18 -2.39 -0.02 2.96 16 Total: -1.00 -68.30 298.79 1.92 -66.38 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.11 Total: 13.07 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 3.68 Total: -28.24 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -3.57 Total: -82.25 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.27 Total: 3.39 kcal Total: -68.30 1.92 -66.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050146516.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.578 kcal (2) G-P(sol) polarization free energy of solvation -68.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds