Wall clock time and date at job start Mon Mar 30 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46867 * 270.00005 * 3 2 1 5 5 H 1.48496 * 109.46893 * 30.00064 * 3 2 1 6 6 H 1.48500 * 109.47088 * 149.99878 * 3 2 1 7 7 C 1.37874 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00265 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99642 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47286 * 180.02562 * 9 7 2 11 11 C 1.46046 * 119.41422 * 90.00004 * 10 9 7 12 12 C 1.52694 * 111.04332 * 142.27079 * 11 10 9 13 13 C 1.50555 * 109.84926 * 51.22740 * 12 11 10 14 14 C 1.37867 * 120.89056 * 146.12780 * 13 12 11 15 15 C 1.38410 * 119.94406 * 179.97438 * 14 13 12 16 16 C 1.38487 * 120.42655 * 359.84101 * 15 14 13 17 17 Cl 1.73608 * 119.92382 * 180.02562 * 16 15 14 18 18 C 1.38215 * 120.15616 * 0.05321 * 16 15 14 19 19 C 1.39216 * 119.55569 * 0.02562 * 18 16 15 20 20 C 1.34821 * 119.41624 * 270.02554 * 10 9 7 21 21 O 1.21555 * 120.45300 * 2.73825 * 20 10 9 22 22 H 0.96999 * 119.99844 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47432 * 60.00354 * 9 7 2 24 24 H 1.09000 * 109.47161 * 300.00332 * 9 7 2 25 25 H 1.08994 * 109.16336 * 21.86727 * 11 10 9 26 26 H 1.09001 * 109.16317 * 262.67123 * 11 10 9 27 27 H 1.09002 * 109.39630 * 171.32176 * 12 11 10 28 28 H 1.09000 * 109.39768 * 291.13530 * 12 11 10 29 29 H 1.08001 * 120.02925 * 359.78922 * 14 13 12 30 30 H 1.07992 * 119.78449 * 179.87083 * 15 14 13 31 31 H 1.07996 * 120.22156 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5752 0.0001 11 6 4.2386 -3.2517 -1.2721 12 6 5.4779 -4.1405 -1.1964 13 6 5.3875 -5.0423 0.0057 14 6 5.9090 -6.3182 -0.0258 15 6 5.8155 -7.1306 1.0909 16 6 5.2034 -6.6695 2.2444 17 17 5.0939 -7.6993 3.6377 18 6 4.6788 -5.3915 2.2887 19 6 4.7698 -4.5725 1.1666 20 6 4.2207 -3.1994 1.1745 21 8 3.9704 -2.6417 2.2252 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6796 0.8895 24 1 3.8745 -0.6807 -0.8905 25 1 4.3809 -2.5050 -2.0532 26 1 3.3724 -3.8657 -1.5188 27 1 5.5442 -4.7469 -2.0997 28 1 6.3671 -3.5155 -1.1140 29 1 6.3873 -6.6846 -0.9221 30 1 6.2230 -8.1303 1.0626 31 1 4.2016 -5.0307 3.1878 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057524689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:48 Heat of formation + Delta-G solvation = -16.673919 kcal Electronic energy + Delta-G solvation = -17366.985596 eV Core-core repulsion = 14445.913335 eV Total energy + Delta-G solvation = -2921.072261 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44345 -38.15877 -36.60107 -35.75504 -33.19444 -31.90754 -31.28087 -28.97375 -27.82109 -24.05057 -23.86527 -21.91908 -21.48383 -18.58053 -17.38681 -17.01023 -16.28654 -15.79036 -15.14992 -14.95359 -14.36863 -14.14812 -13.77173 -13.48145 -13.28534 -12.82992 -12.70750 -12.32948 -12.24443 -11.77326 -11.41956 -11.31198 -11.16228 -11.01233 -10.84060 -10.48209 -10.15108 -9.58538 -9.23119 -9.09624 -8.66557 -8.61282 -7.79675 -6.10361 -4.09741 0.79102 1.09605 2.00908 3.04966 3.25022 3.33561 3.37580 3.61643 3.96822 4.37748 4.50408 4.67457 4.70529 4.89418 5.06480 5.20904 5.27762 5.32291 5.40535 5.70887 5.74081 5.80853 6.05110 6.08121 6.13143 6.31518 6.54927 6.63707 6.90817 7.22190 7.56970 8.11901 8.43182 8.81597 8.93734 9.48987 11.03024 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030695 B = 0.005089 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.980714 B = 5500.476520 C = 6027.459135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.215 3.785 10 N -0.587 5.587 11 C 0.118 3.882 12 C -0.101 4.101 13 C -0.048 4.048 14 C -0.115 4.115 15 C -0.092 4.092 16 C -0.048 4.048 17 Cl -0.071 7.071 18 C -0.051 4.051 19 C -0.108 4.108 20 C 0.552 3.448 21 O -0.527 6.527 22 H 0.265 0.735 23 H 0.043 0.957 24 H 0.028 0.972 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.060 -13.723 -2.363 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.094 3.906 10 N -0.318 5.318 11 C -0.006 4.006 12 C -0.139 4.139 13 C -0.049 4.049 14 C -0.133 4.133 15 C -0.111 4.111 16 C -0.075 4.075 17 Cl -0.042 7.042 18 C -0.071 4.071 19 C -0.112 4.112 20 C 0.339 3.661 21 O -0.404 6.404 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 13.737 -13.353 -1.707 19.234 hybrid contribution 0.212 0.679 0.077 0.716 sum 13.950 -12.674 -1.630 18.918 Atomic orbital electron populations 1.69899 1.06213 1.27034 1.50298 1.24857 0.94770 0.98937 0.94388 0.86865 0.80648 0.83829 0.78523 1.20048 1.20869 1.18825 1.21304 0.89054 0.94931 1.51564 0.90707 1.19772 0.95992 0.77185 0.97605 1.47636 1.63948 1.15948 1.04248 1.21239 0.96203 0.96219 0.86962 1.20933 0.99908 0.97306 0.95743 1.20204 0.95481 0.94594 0.94603 1.20872 1.00905 0.93082 0.98451 1.21141 0.98178 1.00387 0.91428 1.20801 1.04336 0.92607 0.89732 1.98366 1.97158 1.67147 1.41555 1.21071 0.96357 0.90927 0.98726 1.20018 1.01451 0.95821 0.93865 1.17909 0.78907 0.84996 0.84283 1.90765 1.51813 1.67016 1.30804 0.92512 0.93944 0.95368 0.89309 0.91650 0.88694 0.89418 0.84541 0.84749 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 8 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.21 5.19 4.20 -5.19 -0.02 5.17 16 10 N -0.59 -12.14 2.78 -176.70 -0.49 -12.63 16 11 C 0.12 1.78 6.44 -4.44 -0.03 1.75 16 12 C -0.10 -1.14 6.04 -28.11 -0.17 -1.31 16 13 C -0.05 -0.62 5.68 -104.30 -0.59 -1.22 16 14 C -0.11 -1.18 9.73 -39.65 -0.39 -1.56 16 15 C -0.09 -0.98 9.82 -39.43 -0.39 -1.36 16 16 C -0.05 -0.62 6.32 -39.50 -0.25 -0.87 16 17 Cl -0.07 -0.83 28.95 -51.86 -1.50 -2.34 16 18 C -0.05 -0.80 9.42 -39.23 -0.37 -1.17 16 19 C -0.11 -1.81 5.78 -105.06 -0.61 -2.42 16 20 C 0.55 11.80 7.48 -12.29 -0.09 11.71 16 21 O -0.53 -13.35 16.22 5.32 0.09 -13.27 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.04 1.11 6.49 -51.93 -0.34 0.77 16 24 H 0.03 0.62 7.22 -51.93 -0.37 0.25 16 25 H 0.09 1.21 7.74 -51.93 -0.40 0.81 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.15 2.37 7.85 -52.49 -0.41 1.96 16 LS Contribution 282.58 15.07 4.26 4.26 Total: -1.00 -33.65 282.58 -8.11 -41.76 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -3.23 Total: -2.77 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -3.34 Total: -4.79 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.28 Total: -39.46 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.65 -8.11 -41.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057524689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.086 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds