Wall clock time and date at job start Mon Mar 30 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46867 * 270.00005 * 3 2 1 5 5 H 1.48496 * 109.46893 * 30.00064 * 3 2 1 6 6 H 1.48500 * 109.47088 * 149.99878 * 3 2 1 7 7 C 1.37874 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00265 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99642 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47286 * 180.02562 * 9 7 2 11 11 C 1.46046 * 119.41422 * 90.00004 * 10 9 7 12 12 C 1.52694 * 111.04332 * 142.27079 * 11 10 9 13 13 C 1.50555 * 109.84926 * 51.22740 * 12 11 10 14 14 C 1.37867 * 120.89056 * 146.12780 * 13 12 11 15 15 C 1.38410 * 119.94406 * 179.97438 * 14 13 12 16 16 C 1.38487 * 120.42655 * 359.84101 * 15 14 13 17 17 Cl 1.73608 * 119.92382 * 180.02562 * 16 15 14 18 18 C 1.38215 * 120.15616 * 0.05321 * 16 15 14 19 19 C 1.39216 * 119.55569 * 0.02562 * 18 16 15 20 20 C 1.34821 * 119.41624 * 270.02554 * 10 9 7 21 21 O 1.21555 * 120.45300 * 2.73825 * 20 10 9 22 22 H 0.96999 * 119.99844 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47432 * 60.00354 * 9 7 2 24 24 H 1.09000 * 109.47161 * 300.00332 * 9 7 2 25 25 H 1.08994 * 109.16336 * 21.86727 * 11 10 9 26 26 H 1.09001 * 109.16317 * 262.67123 * 11 10 9 27 27 H 1.09002 * 109.39630 * 171.32176 * 12 11 10 28 28 H 1.09000 * 109.39768 * 291.13530 * 12 11 10 29 29 H 1.08001 * 120.02925 * 359.78922 * 14 13 12 30 30 H 1.07992 * 119.78449 * 179.87083 * 15 14 13 31 31 H 1.07996 * 120.22156 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5752 0.0001 11 6 4.2386 -3.2517 -1.2721 12 6 5.4779 -4.1405 -1.1964 13 6 5.3875 -5.0423 0.0057 14 6 5.9090 -6.3182 -0.0258 15 6 5.8155 -7.1306 1.0909 16 6 5.2034 -6.6695 2.2444 17 17 5.0939 -7.6993 3.6377 18 6 4.6788 -5.3915 2.2887 19 6 4.7698 -4.5725 1.1666 20 6 4.2207 -3.1994 1.1745 21 8 3.9704 -2.6417 2.2252 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6796 0.8895 24 1 3.8745 -0.6807 -0.8905 25 1 4.3809 -2.5050 -2.0532 26 1 3.3724 -3.8657 -1.5188 27 1 5.5442 -4.7469 -2.0997 28 1 6.3671 -3.5155 -1.1140 29 1 6.3873 -6.6846 -0.9221 30 1 6.2230 -8.1303 1.0626 31 1 4.2016 -5.0307 3.1878 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057524689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:47 Heat of formation + Delta-G solvation = -39.151098 kcal Electronic energy + Delta-G solvation = -17367.960279 eV Core-core repulsion = 14445.913335 eV Total energy + Delta-G solvation = -2922.046945 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.72483 -39.46865 -37.69944 -37.17258 -35.07406 -33.48505 -32.40416 -30.27176 -29.54408 -25.60437 -25.00642 -23.48877 -22.66119 -19.88246 -19.17354 -18.68428 -17.70605 -17.00414 -16.63670 -16.12450 -15.90591 -15.73521 -14.94295 -14.77091 -14.56828 -14.47345 -13.94426 -13.81926 -13.47588 -13.40086 -12.95376 -12.58840 -12.38779 -12.28096 -12.03711 -12.00436 -11.93247 -11.77999 -10.85978 -10.83473 -10.16557 -9.72513 -9.41904 -8.35789 -6.42131 -0.28591 0.10006 1.03403 1.31454 1.37021 1.47695 1.75436 2.15742 2.30580 2.68795 2.97932 3.45155 3.63900 3.70526 3.91452 4.10684 4.26596 4.34303 4.43649 4.66065 4.72825 4.75912 4.86861 4.89541 5.08565 5.09515 5.12550 5.33886 5.41934 5.50354 5.71098 6.19685 6.54942 6.59109 7.13953 7.27332 8.81592 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030695 B = 0.005089 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.980714 B = 5500.476520 C = 6027.459135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.245 1.245 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.540 4.540 8 H 0.023 0.977 9 C 0.222 3.778 10 N -0.594 5.594 11 C 0.104 3.896 12 C -0.090 4.090 13 C -0.046 4.046 14 C -0.094 4.094 15 C -0.075 4.075 16 C -0.055 4.055 17 Cl -0.065 7.065 18 C -0.073 4.073 19 C -0.142 4.142 20 C 0.539 3.461 21 O -0.590 6.590 22 H 0.269 0.731 23 H 0.020 0.980 24 H 0.061 0.939 25 H 0.108 0.892 26 H 0.056 0.944 27 H 0.146 0.854 28 H 0.103 0.897 29 H 0.190 0.810 30 H 0.173 0.827 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.369 -15.135 -5.008 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.169 1.169 5 H -0.208 1.208 6 H -0.180 1.180 7 C -0.579 4.579 8 H 0.041 0.959 9 C 0.100 3.900 10 N -0.324 5.324 11 C -0.017 4.017 12 C -0.127 4.127 13 C -0.047 4.047 14 C -0.112 4.112 15 C -0.093 4.093 16 C -0.081 4.081 17 Cl -0.036 7.036 18 C -0.093 4.093 19 C -0.145 4.145 20 C 0.329 3.671 21 O -0.472 6.472 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.126 0.874 26 H 0.074 0.926 27 H 0.164 0.836 28 H 0.121 0.879 29 H 0.207 0.793 30 H 0.190 0.810 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.068 -14.809 -4.402 23.022 hybrid contribution -0.878 0.955 0.920 1.590 sum 16.190 -13.854 -3.482 21.591 Atomic orbital electron populations 1.70064 1.08353 1.28464 1.51723 1.25906 0.95706 1.03522 0.93595 0.85654 0.79038 0.77785 0.80135 1.16858 1.20815 1.17978 1.21520 0.91591 0.93154 1.51601 0.95899 1.19473 0.92870 0.79931 0.97719 1.47779 1.63215 1.15034 1.06340 1.21642 0.98272 0.97136 0.84678 1.21009 0.97825 0.96930 0.96903 1.20503 0.94516 0.96143 0.93503 1.21399 0.98887 0.91048 0.99860 1.21665 0.95744 1.01872 0.90052 1.20889 1.04572 0.91598 0.91082 1.98367 1.97171 1.66486 1.41604 1.20940 0.97853 0.92625 0.97846 1.19742 1.04732 0.93609 0.96439 1.18787 0.78000 0.86758 0.83567 1.90700 1.54701 1.68896 1.32912 0.92177 0.96240 0.92138 0.87425 0.92567 0.83591 0.87931 0.79314 0.80963 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 2 C 0.01 0.64 5.47 84.65 0.46 1.10 16 3 Si 0.95 44.39 27.47 68.60 1.88 46.28 16 4 H -0.24 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.26 -11.52 6.54 99.48 0.65 -10.87 16 7 C -0.54 -32.54 9.94 25.60 0.25 -32.29 16 8 H 0.02 1.56 8.06 -2.91 -0.02 1.53 16 9 C 0.22 10.98 4.20 85.63 0.36 11.34 16 10 N -0.59 -25.19 2.78 -831.20 -2.31 -27.50 16 11 C 0.10 3.00 6.44 86.36 0.56 3.56 16 12 C -0.09 -1.62 6.04 29.70 0.18 -1.44 16 13 C -0.05 -1.05 5.68 -19.66 -0.11 -1.16 16 14 C -0.09 -1.40 9.73 22.22 0.22 -1.18 16 15 C -0.07 -1.25 9.82 22.37 0.22 -1.03 16 16 C -0.05 -1.33 6.32 22.32 0.14 -1.19 16 17 Cl -0.07 -1.47 28.95 -2.72 -0.08 -1.55 16 18 C -0.07 -2.36 9.42 22.50 0.21 -2.15 16 19 C -0.14 -4.84 5.78 -20.15 -0.12 -4.95 16 20 C 0.54 24.38 7.48 86.79 0.65 25.03 16 21 O -0.59 -32.56 16.22 -3.89 -0.06 -32.63 16 22 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 23 H 0.02 1.05 6.49 -2.39 -0.02 1.04 16 24 H 0.06 2.59 7.22 -2.39 -0.02 2.58 16 25 H 0.11 2.64 7.74 -2.39 -0.02 2.63 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.15 1.24 8.07 -2.39 -0.02 1.22 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.19 0.96 8.06 -2.91 -0.02 0.93 16 30 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.12 4.30 7.85 -2.91 -0.02 4.28 16 Total: -1.00 -82.37 282.58 3.84 -78.53 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 1.09 Total: 1.55 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 3.02 Total: -4.36 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -2.02 Total: -87.83 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.06 Total: -32.63 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -82.37 3.84 -78.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057524689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.377 kcal (2) G-P(sol) polarization free energy of solvation -82.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds