Wall clock time and date at job start Mon Mar 30 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48500 * 109.47226 * 240.00393 * 3 2 1 5 5 H 1.48494 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47181 * 120.00320 * 3 2 1 7 7 C 1.37878 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00644 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99397 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.46772 * 179.97438 * 9 7 2 11 11 C 1.46126 * 119.46979 * 90.00336 * 10 9 7 12 12 C 1.52653 * 110.99254 * 139.82358 * 11 10 9 13 13 C 1.50602 * 110.11639 * 50.50615 * 12 11 10 14 14 C 1.37961 * 120.67823 * 147.60937 * 13 12 11 15 15 Cl 1.73605 * 120.03212 * 358.31372 * 14 13 12 16 16 C 1.38520 * 119.93593 * 178.28827 * 14 13 12 17 17 C 1.38367 * 120.40260 * 0.02562 * 16 14 13 18 18 C 1.38063 * 120.18224 * 0.37896 * 17 16 14 19 19 C 1.39322 * 119.64287 * 359.89489 * 18 17 16 20 20 C 1.34659 * 119.47320 * 269.97829 * 10 9 7 21 21 O 1.21555 * 120.34158 * 7.92803 * 20 10 9 22 22 H 0.97006 * 119.99791 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47720 * 60.00354 * 9 7 2 24 24 H 1.09003 * 109.47359 * 299.99687 * 9 7 2 25 25 H 1.09006 * 109.16830 * 260.21060 * 11 10 9 26 26 H 1.09001 * 109.17567 * 19.42754 * 11 10 9 27 27 H 1.08993 * 109.35946 * 170.70276 * 12 11 10 28 28 H 1.08994 * 109.35987 * 290.30573 * 12 11 10 29 29 H 1.08003 * 119.79965 * 180.02562 * 16 14 13 30 30 H 1.07997 * 119.90730 * 180.38497 * 17 16 14 31 31 H 1.08003 * 120.17953 * 179.88198 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6711 -4.1597 1.2698 12 6 2.7631 -5.6823 1.2094 13 6 3.5383 -6.1064 -0.0101 14 6 4.3152 -7.2462 0.0109 15 17 4.4418 -8.1847 1.4659 16 6 4.9937 -7.6414 -1.1303 17 6 4.8983 -6.8992 -2.2941 18 6 4.1305 -5.7521 -2.3248 19 6 3.4506 -5.3471 -1.1782 20 6 2.6323 -4.1160 -1.1747 21 8 2.3497 -3.5639 -2.2200 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6246 -2.5571 0.8897 25 1 3.6559 -3.7502 1.4948 26 1 1.9765 -3.8740 2.0598 27 1 3.2666 -6.0496 2.1035 28 1 1.7588 -6.1034 1.1638 29 1 5.6010 -8.5344 -1.1115 30 1 5.4257 -7.2181 -3.1809 31 1 4.0576 -5.1717 -3.2327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057524693.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:30 Heat of formation + Delta-G solvation = -39.336775 kcal Electronic energy + Delta-G solvation = -17453.539483 eV Core-core repulsion = 14531.484487 eV Total energy + Delta-G solvation = -2922.054996 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.71284 -39.45225 -37.46216 -37.32145 -35.21115 -33.50033 -32.02926 -30.25417 -29.17325 -25.77388 -25.10429 -23.66120 -22.66702 -19.90070 -18.74633 -18.61348 -17.70264 -16.92938 -16.68926 -16.20990 -15.95672 -15.67475 -14.98255 -14.93515 -14.63904 -14.24270 -13.78849 -13.61118 -13.26378 -13.13329 -12.91436 -12.64126 -12.48287 -12.43867 -12.30250 -12.14445 -11.80150 -11.73452 -10.80295 -10.65584 -10.05455 -9.74031 -9.48863 -8.24391 -6.39003 -0.27669 0.09285 1.05106 1.35845 1.40138 1.47624 1.79792 2.16934 2.40115 2.71242 3.05109 3.43039 3.53022 3.72122 3.94108 4.19208 4.21815 4.29457 4.45110 4.51541 4.68450 4.78965 4.93683 5.00331 5.09035 5.15106 5.21046 5.33516 5.49970 5.65928 5.77365 6.02178 6.60579 6.68922 7.19521 7.35176 8.82747 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.005205 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.978725 B = 5378.623171 C = 5830.627155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.967 3.033 4 H -0.279 1.279 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.049 0.951 9 C 0.260 3.740 10 N -0.598 5.598 11 C 0.114 3.886 12 C -0.096 4.096 13 C -0.046 4.046 14 C -0.047 4.047 15 Cl -0.049 7.049 16 C -0.075 4.075 17 C -0.107 4.107 18 C -0.069 4.069 19 C -0.141 4.141 20 C 0.539 3.461 21 O -0.586 6.586 22 H 0.269 0.731 23 H -0.001 1.001 24 H 0.033 0.967 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.173 0.827 30 H 0.175 0.825 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.216 -18.402 3.067 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.205 1.205 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.067 0.933 9 C 0.139 3.861 10 N -0.328 5.328 11 C -0.009 4.009 12 C -0.133 4.133 13 C -0.048 4.048 14 C -0.073 4.073 15 Cl -0.020 7.020 16 C -0.094 4.094 17 C -0.125 4.125 18 C -0.088 4.088 19 C -0.144 4.144 20 C 0.328 3.672 21 O -0.468 6.468 22 H 0.077 0.923 23 H 0.017 0.983 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.190 0.810 30 H 0.193 0.807 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.894 -18.069 2.733 21.275 hybrid contribution -0.152 1.276 -0.092 1.288 sum 10.742 -16.793 2.641 20.109 Atomic orbital electron populations 1.70029 1.07466 1.28339 1.50754 1.25826 0.95824 1.02943 0.94265 0.85474 0.78357 0.78094 0.78928 1.20509 1.20000 1.18485 1.21612 0.93089 0.91983 1.51650 0.93291 1.18897 0.87539 0.83540 0.96156 1.47975 1.44638 1.34116 1.06102 1.21486 1.00987 0.93126 0.85257 1.20963 1.01314 0.94549 0.96497 1.19923 0.96403 0.93587 0.94898 1.20695 1.02024 0.94329 0.90290 1.98364 1.97140 1.71088 1.35442 1.21641 0.97073 1.00502 0.90141 1.21455 0.98329 0.93168 0.99522 1.21465 0.93820 0.96749 0.96732 1.19793 1.02627 0.95989 0.96000 1.18716 0.80210 0.84711 0.83531 1.90700 1.59741 1.63124 1.33245 0.92257 0.98294 0.94873 0.91707 0.88337 0.85739 0.88629 0.80987 0.80715 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 2 C 0.01 0.62 5.46 84.66 0.46 1.09 16 3 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -32.27 9.38 25.60 0.24 -32.03 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 9 C 0.26 14.38 5.09 85.63 0.44 14.81 16 10 N -0.60 -27.23 2.77 -831.36 -2.30 -29.54 16 11 C 0.11 3.78 6.46 86.33 0.56 4.34 16 12 C -0.10 -2.45 5.71 29.70 0.17 -2.28 16 13 C -0.05 -1.28 5.69 -19.64 -0.11 -1.39 16 14 C -0.05 -0.99 6.31 22.27 0.14 -0.85 16 15 Cl -0.05 -0.87 27.30 -2.72 -0.07 -0.94 16 16 C -0.08 -1.27 9.82 22.37 0.22 -1.05 16 17 C -0.11 -2.00 10.03 22.26 0.22 -1.77 16 18 C -0.07 -1.96 9.63 22.49 0.22 -1.74 16 19 C -0.14 -4.86 5.80 -20.15 -0.12 -4.98 16 20 C 0.54 24.94 7.50 86.80 0.65 25.59 16 21 O -0.59 -32.55 16.17 -3.89 -0.06 -32.61 16 22 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 23 H 0.00 -0.07 7.51 -2.39 -0.02 -0.08 16 24 H 0.03 1.81 7.79 -2.39 -0.02 1.80 16 25 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.10 3.06 7.73 -2.39 -0.02 3.04 16 27 H 0.12 2.43 6.81 -2.39 -0.02 2.42 16 28 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 30 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.13 3.92 7.78 -2.91 -0.02 3.90 16 Total: -1.00 -74.57 283.43 4.11 -70.46 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 1.15 Total: 1.40 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 3.09 Total: -0.27 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -2.02 Total: -85.62 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.06 Total: -32.61 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.07 Total: -0.94 kcal Total: -74.57 4.11 -70.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057524693.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.124 kcal (2) G-P(sol) polarization free energy of solvation -74.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds