Wall clock time and date at job start Mon Mar 30 2020 06:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47167 * 2 1 4 4 N 1.30104 * 124.96114 * 90.01668 * 3 2 1 5 5 C 1.35675 * 109.50719 * 180.02562 * 4 3 2 6 6 C 1.39841 * 133.86143 * 180.02562 * 5 4 3 7 7 C 1.38263 * 118.14585 * 179.97438 * 6 5 4 8 8 Cl 1.73603 * 120.23262 * 180.02562 * 7 6 5 9 9 C 1.38722 * 119.53144 * 0.02562 * 7 6 5 10 10 N 1.31686 * 121.34208 * 359.97438 * 9 7 6 11 11 C 1.32341 * 121.59005 * 0.02562 * 10 9 7 12 12 N 1.36117 * 124.95418 * 270.02583 * 3 2 1 13 13 C 1.46500 * 126.27741 * 0.02562 * 12 3 2 14 14 C 1.50700 * 109.47081 * 269.95603 * 13 12 3 15 15 H 1.07994 * 120.00312 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99659 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00117 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47164 * 90.00204 * 18 16 14 20 20 H 1.48494 * 109.46805 * 209.99911 * 18 16 14 21 21 H 1.48497 * 109.47170 * 330.00247 * 18 16 14 22 22 H 1.08995 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47391 * 300.00478 * 1 2 3 24 24 H 1.08997 * 109.46565 * 60.00576 * 1 2 3 25 25 H 1.08998 * 109.47391 * 239.99522 * 2 1 3 26 26 H 1.08997 * 109.46565 * 119.99424 * 2 1 3 27 27 H 1.07996 * 120.92390 * 359.95240 * 6 5 4 28 28 H 1.07998 * 119.32765 * 180.02562 * 9 7 6 29 29 H 1.09000 * 109.46934 * 29.95741 * 13 12 3 30 30 H 1.09000 * 109.46900 * 149.95542 * 13 12 3 31 31 H 0.96994 * 119.99750 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2812 2.1236 1.0663 5 6 2.7165 3.3567 0.7047 6 6 3.1178 4.4904 1.4184 7 6 3.5117 5.6059 0.7027 8 17 4.0208 7.0426 1.5337 9 6 3.4972 5.5690 -0.6839 10 7 3.1155 4.4907 -1.3364 11 6 2.7290 3.3962 -0.7008 12 7 2.2919 2.1562 -1.1156 13 6 2.1337 1.7122 -2.5027 14 6 3.4192 1.0868 -2.9797 15 1 4.2688 1.0258 -2.3159 16 6 3.5101 0.5916 -4.2633 17 7 2.4749 0.6645 -5.0712 18 14 5.1037 -0.1830 -4.8548 19 1 5.0859 -1.6384 -4.5605 20 1 5.2412 0.0243 -6.3188 21 1 6.2509 0.4494 -4.1554 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8900 25 1 1.8935 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.1195 4.4945 2.4983 28 1 3.8059 6.4420 -1.2396 29 1 1.3296 0.9785 -2.5599 30 1 1.8903 2.5678 -3.1326 31 1 2.5391 0.3165 -5.9743 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057792710.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:08 Heat of formation + Delta-G solvation = 46.410643 kcal Electronic energy + Delta-G solvation = -17404.492519 eV Core-core repulsion = 14518.448561 eV Total energy + Delta-G solvation = -2886.043958 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.39468 -39.69468 -37.51898 -36.16289 -34.50776 -34.40223 -32.60289 -30.14743 -29.29275 -25.86718 -25.49743 -23.84582 -23.25617 -20.93859 -19.13654 -18.90865 -18.27990 -17.37892 -16.83760 -16.53346 -15.83148 -15.21192 -14.97548 -14.71871 -14.52311 -14.21723 -14.04768 -13.74466 -13.40938 -13.12633 -12.76422 -12.69607 -12.55019 -12.40333 -12.22675 -12.14547 -12.05002 -11.75506 -11.23959 -10.77180 -10.29011 -9.62042 -9.42250 -8.38537 -6.55043 -0.29010 0.05755 0.92510 1.34981 1.36668 1.45943 1.59469 1.72161 2.30616 2.63874 2.93692 3.02484 3.27368 3.60216 3.71184 3.89181 4.14014 4.21313 4.32709 4.49444 4.66189 4.76879 4.83282 4.94662 4.99859 5.05642 5.27384 5.34710 5.47372 5.52284 5.74484 6.00076 6.50588 6.69827 6.81585 7.16537 8.69465 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.018616 B = 0.006241 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.731958 B = 4485.310925 C = 5544.923010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C 0.300 3.700 4 N -0.511 5.511 5 C -0.009 4.009 6 C -0.015 4.015 7 C -0.096 4.096 8 Cl -0.031 7.031 9 C 0.141 3.859 10 N -0.489 5.489 11 C 0.209 3.791 12 N -0.460 5.460 13 C 0.258 3.742 14 C -0.555 4.555 15 H 0.047 0.953 16 C 0.028 3.972 17 N -0.914 5.914 18 Si 0.967 3.033 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.278 1.278 22 H 0.097 0.903 23 H 0.064 0.936 24 H 0.038 0.962 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.171 0.829 28 H 0.198 0.802 29 H 0.053 0.947 30 H 0.022 0.978 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 4.786 11.014 12.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 C 0.034 3.966 4 N -0.232 5.232 5 C -0.132 4.132 6 C -0.042 4.042 7 C -0.128 4.128 8 Cl -0.002 7.002 9 C -0.029 4.029 10 N -0.201 5.201 11 C -0.027 4.027 12 N -0.147 5.147 13 C 0.139 3.861 14 C -0.593 4.593 15 H 0.065 0.935 16 C -0.174 4.174 17 N -0.551 5.551 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.203 1.203 22 H 0.116 0.884 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.138 0.862 27 H 0.189 0.811 28 H 0.214 0.786 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.726 4.439 10.628 11.540 hybrid contribution 0.865 0.184 -0.709 1.134 sum 0.139 4.623 9.918 10.944 Atomic orbital electron populations 1.21677 0.91942 1.04083 1.01699 1.20389 0.97937 0.84613 1.05672 1.24359 0.95498 0.96928 0.79766 1.70377 1.22513 1.02704 1.27587 1.19926 1.06634 0.95459 0.91167 1.20678 0.94426 0.87703 1.01441 1.21514 1.07148 0.90745 0.93397 1.98357 1.89240 1.34853 1.77741 1.23030 0.94816 0.94954 0.90114 1.66507 1.13441 0.98788 1.41342 1.19443 1.02691 0.88850 0.91709 1.45861 1.49835 1.08937 1.10049 1.19353 0.98169 0.95369 0.73195 1.21312 0.97954 1.40965 0.99028 0.93471 1.25670 1.00276 0.95558 0.95866 1.69990 1.31545 1.45600 1.07995 0.85411 0.78601 0.79210 0.77639 1.18605 1.19948 1.20342 0.88444 0.91742 0.94239 0.89450 0.86224 0.81118 0.78573 0.92925 0.96005 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.90 71.98 0.71 -2.82 16 2 C -0.05 -1.47 6.00 29.85 0.18 -1.29 16 3 C 0.30 12.03 7.11 137.90 0.98 13.01 16 4 N -0.51 -20.33 11.28 -179.83 -2.03 -22.36 16 5 C -0.01 -0.35 7.24 39.52 0.29 -0.07 16 6 C -0.01 -0.46 10.01 22.66 0.23 -0.23 16 7 C -0.10 -2.73 6.33 22.39 0.14 -2.59 16 8 Cl -0.03 -0.66 28.98 -2.72 -0.08 -0.74 16 9 C 0.14 4.52 10.96 84.83 0.93 5.45 16 10 N -0.49 -20.83 10.38 -192.64 -2.00 -22.83 16 11 C 0.21 9.41 8.01 133.83 1.07 10.48 16 12 N -0.46 -21.26 2.78 -515.37 -1.43 -22.70 16 13 C 0.26 13.23 5.49 85.63 0.47 13.70 16 14 C -0.55 -30.31 9.39 25.60 0.24 -30.07 16 15 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 16 C 0.03 1.50 5.46 84.66 0.46 1.97 16 17 N -0.91 -50.64 13.29 21.45 0.28 -50.36 16 18 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.09 2.96 7.65 -2.39 -0.02 2.94 16 26 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.17 4.28 8.06 -2.91 -0.02 4.25 16 28 H 0.20 4.81 8.06 -2.91 -0.02 4.78 16 29 H 0.05 2.65 7.61 -2.39 -0.02 2.63 16 30 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -63.73 291.66 3.62 -60.11 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.15 Total: 6.99 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.70 Total: 7.54 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -5.18 Total: -118.25 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -63.73 3.62 -60.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792710.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.522 kcal (2) G-P(sol) polarization free energy of solvation -63.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds