Wall clock time and date at job start Mon Mar 30 2020 06:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47375 * 2 1 4 4 C 1.50691 * 109.47386 * 180.02562 * 3 2 1 5 5 N 1.30093 * 124.98723 * 90.01959 * 4 3 2 6 6 C 1.35784 * 109.62127 * 180.02562 * 5 4 3 7 7 C 1.39781 * 133.80129 * 180.02562 * 6 5 4 8 8 C 1.38345 * 118.15546 * 179.97438 * 7 6 5 9 9 Cl 1.73600 * 120.24281 * 180.02562 * 8 7 6 10 10 C 1.38708 * 119.51701 * 0.02562 * 8 7 6 11 11 N 1.31719 * 121.32604 * 359.97191 * 10 8 7 12 12 C 1.32268 * 121.59757 * 0.02562 * 11 10 8 13 13 N 1.36598 * 124.98500 * 269.72357 * 4 3 2 14 14 C 1.37399 * 126.34073 * 359.97438 * 13 4 3 15 15 H 1.07999 * 119.99543 * 322.51939 * 14 13 4 16 16 C 1.38898 * 120.00324 * 142.52484 * 14 13 4 17 17 N 1.31381 * 120.00347 * 163.58197 * 16 14 13 18 18 Si 1.86804 * 120.00113 * 343.58063 * 16 14 13 19 19 H 1.48497 * 109.47004 * 95.72973 * 18 16 14 20 20 H 1.48499 * 109.47407 * 215.72776 * 18 16 14 21 21 H 1.48498 * 109.46949 * 335.73003 * 18 16 14 22 22 H 1.09007 * 109.47286 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47516 * 300.00144 * 1 2 3 24 24 H 1.09004 * 109.47303 * 59.99894 * 1 2 3 25 25 H 1.09004 * 109.47303 * 120.00106 * 2 1 3 26 26 H 1.08998 * 109.46685 * 239.99920 * 2 1 3 27 27 H 1.09004 * 109.46991 * 300.00297 * 3 2 1 28 28 H 1.08996 * 109.46800 * 59.99692 * 3 2 1 29 29 H 1.08008 * 120.92328 * 359.95229 * 7 6 5 30 30 H 1.08003 * 119.34365 * 179.97438 * 10 8 7 31 31 H 0.97000 * 120.00352 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 7 4.2924 1.4430 -1.0668 6 6 5.6019 1.4423 -0.7075 7 6 6.8018 1.4428 -1.4245 8 6 7.9878 1.4422 -0.7122 9 17 9.5095 1.4435 -1.5477 10 6 7.9522 1.4406 0.6744 11 7 6.8099 1.4401 1.3302 12 6 5.6480 1.4407 0.6981 13 7 4.3306 1.4477 1.1182 14 6 3.8912 1.4543 2.4200 15 1 3.0155 2.0251 2.6914 16 6 4.5733 0.7270 3.3869 17 7 4.3689 0.9744 4.6610 18 14 5.7813 -0.6032 2.8760 19 1 7.1562 -0.0424 2.8573 20 1 5.7185 -1.7274 3.8442 21 1 5.4296 -1.0970 1.5204 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 6.8031 1.4433 -2.5045 30 1 8.8798 1.4397 1.2277 31 1 4.8456 0.4668 5.3362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057793285.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:15 Heat of formation + Delta-G solvation = 65.255886 kcal Electronic energy + Delta-G solvation = -17783.894257 eV Core-core repulsion = 14898.667490 eV Total energy + Delta-G solvation = -2885.226767 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.56107 -37.96649 -36.09543 -34.44765 -34.31703 -32.29741 -30.66875 -29.42320 -26.81286 -25.44112 -22.67388 -22.33787 -21.16648 -19.50283 -18.59401 -17.00451 -16.35238 -15.67598 -15.18817 -14.66982 -14.50644 -13.91211 -13.50049 -13.24186 -12.85787 -12.79833 -12.57104 -12.38269 -11.78255 -11.66515 -11.41082 -11.12841 -11.02454 -10.84974 -10.62172 -10.33438 -10.26487 -10.15867 -9.83860 -9.13605 -8.30964 -7.99191 -7.62105 -6.94487 -4.70219 1.40097 1.81285 2.43122 3.01359 3.21899 3.26342 3.55783 3.65276 4.02833 4.38891 4.66222 4.78189 5.22357 5.25938 5.35136 5.39502 5.47414 5.57259 5.83564 5.92192 5.98917 6.10874 6.11845 6.29140 6.39693 6.49613 6.64816 6.71665 6.77615 7.15964 7.45957 7.78424 8.32487 8.43132 8.75738 8.91213 10.08852 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.008346 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.994241 B = 3354.169528 C = 4486.763960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.024 4.024 4 C 0.239 3.761 5 N -0.508 5.508 6 C 0.002 3.998 7 C -0.021 4.021 8 C -0.111 4.111 9 Cl -0.078 7.078 10 C 0.112 3.888 11 N -0.438 5.438 12 C 0.180 3.820 13 N -0.283 5.283 14 C -0.353 4.353 15 H 0.127 0.873 16 C 0.096 3.904 17 N -0.822 5.822 18 Si 0.895 3.105 19 H -0.228 1.228 20 H -0.292 1.292 21 H -0.274 1.274 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.137 0.863 30 H 0.159 0.841 31 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 -1.161 -7.183 7.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.063 4.063 4 C -0.023 4.023 5 N -0.229 5.229 6 C -0.126 4.126 7 C -0.049 4.049 8 C -0.143 4.143 9 Cl -0.050 7.050 10 C -0.060 4.060 11 N -0.150 5.150 12 C -0.058 4.058 13 N 0.045 4.955 14 C -0.480 4.480 15 H 0.145 0.855 16 C -0.120 4.120 17 N -0.450 5.450 18 Si 0.722 3.278 19 H -0.152 1.152 20 H -0.220 1.220 21 H -0.199 1.199 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.155 0.845 30 H 0.176 0.824 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.437 -1.160 -6.716 6.829 hybrid contribution 1.056 -0.608 -0.081 1.221 sum 1.493 -1.768 -6.797 7.180 Atomic orbital electron populations 1.21741 0.95628 1.01415 1.01686 1.21441 0.95374 0.95970 1.02837 1.19955 0.84548 0.98283 1.03478 1.23422 0.95171 1.03063 0.80626 1.70202 0.99687 1.25192 1.27841 1.19259 0.92702 1.09231 0.91417 1.20231 0.87874 0.97221 0.99613 1.21354 0.86557 1.13066 0.93365 1.98308 1.30665 1.97457 1.78562 1.22163 0.95066 0.99782 0.89027 1.66530 0.96170 1.12884 1.39383 1.19153 0.86948 1.08722 0.90975 1.41438 1.01363 1.45355 1.07328 1.19381 1.16281 1.32866 0.79482 0.85540 1.25314 0.95738 0.96635 0.94360 1.69681 1.38417 1.36510 1.00344 0.86411 0.84012 0.79106 0.78288 1.15174 1.22041 1.19924 0.92899 0.92542 0.92855 0.91267 0.91818 0.89636 0.89679 0.84492 0.82417 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.85 5.92 -26.73 -0.16 -2.01 16 3 C -0.02 -0.41 5.49 -27.89 -0.15 -0.56 16 4 C 0.24 5.29 7.08 -154.32 -1.09 4.19 16 5 N -0.51 -11.51 11.27 -8.07 -0.09 -11.60 16 6 C 0.00 0.06 7.24 -84.64 -0.61 -0.56 16 7 C -0.02 -0.41 10.02 -38.97 -0.39 -0.80 16 8 C -0.11 -2.01 6.34 -39.37 -0.25 -2.26 16 9 Cl -0.08 -1.14 28.98 -51.86 -1.50 -2.65 16 10 C 0.11 2.22 10.89 -17.43 -0.19 2.03 16 11 N -0.44 -10.41 6.18 -12.15 -0.08 -10.48 16 12 C 0.18 4.45 5.84 -155.27 -0.91 3.54 16 13 N -0.28 -7.04 2.53 -58.25 -0.15 -7.18 16 14 C -0.35 -9.15 9.92 -14.81 -0.15 -9.30 16 15 H 0.13 3.28 7.61 -52.49 -0.40 2.88 16 16 C 0.10 2.52 5.44 -17.50 -0.10 2.42 16 17 N -0.82 -21.88 13.95 55.49 0.77 -21.10 16 18 Si 0.90 21.88 24.46 -169.99 -4.16 17.72 16 19 H -0.23 -5.44 6.00 56.52 0.34 -5.11 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -7.14 6.95 56.52 0.39 -6.74 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.43 7.45 -51.93 -0.39 1.05 16 29 H 0.14 2.28 8.06 -52.48 -0.42 1.86 16 30 H 0.16 2.61 8.06 -52.48 -0.42 2.19 16 31 H 0.29 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 279.85 15.07 4.22 4.22 Total: -1.00 -28.63 279.85 -7.98 -36.61 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -3.37 Total: -0.80 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -3.63 Total: -4.74 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.46 Total: -50.37 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.16 Total: 17.72 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.63 -7.98 -36.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057793285.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.866 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds