Wall clock time and date at job start Mon Mar 30 2020 06:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47375 * 2 1 4 4 C 1.50691 * 109.47386 * 180.02562 * 3 2 1 5 5 N 1.30093 * 124.98723 * 90.01959 * 4 3 2 6 6 C 1.35784 * 109.62127 * 180.02562 * 5 4 3 7 7 C 1.39781 * 133.80129 * 180.02562 * 6 5 4 8 8 C 1.38345 * 118.15546 * 179.97438 * 7 6 5 9 9 Cl 1.73600 * 120.24281 * 180.02562 * 8 7 6 10 10 C 1.38708 * 119.51701 * 0.02562 * 8 7 6 11 11 N 1.31719 * 121.32604 * 359.97191 * 10 8 7 12 12 C 1.32268 * 121.59757 * 0.02562 * 11 10 8 13 13 N 1.36598 * 124.98500 * 269.72357 * 4 3 2 14 14 C 1.37399 * 126.34073 * 359.97438 * 13 4 3 15 15 H 1.07999 * 119.99543 * 322.51939 * 14 13 4 16 16 C 1.38898 * 120.00324 * 142.52484 * 14 13 4 17 17 N 1.31381 * 120.00347 * 163.58197 * 16 14 13 18 18 Si 1.86804 * 120.00113 * 343.58063 * 16 14 13 19 19 H 1.48497 * 109.47004 * 95.72973 * 18 16 14 20 20 H 1.48499 * 109.47407 * 215.72776 * 18 16 14 21 21 H 1.48498 * 109.46949 * 335.73003 * 18 16 14 22 22 H 1.09007 * 109.47286 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47516 * 300.00144 * 1 2 3 24 24 H 1.09004 * 109.47303 * 59.99894 * 1 2 3 25 25 H 1.09004 * 109.47303 * 120.00106 * 2 1 3 26 26 H 1.08998 * 109.46685 * 239.99920 * 2 1 3 27 27 H 1.09004 * 109.46991 * 300.00297 * 3 2 1 28 28 H 1.08996 * 109.46800 * 59.99692 * 3 2 1 29 29 H 1.08008 * 120.92328 * 359.95229 * 7 6 5 30 30 H 1.08003 * 119.34365 * 179.97438 * 10 8 7 31 31 H 0.97000 * 120.00352 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 7 4.2924 1.4430 -1.0668 6 6 5.6019 1.4423 -0.7075 7 6 6.8018 1.4428 -1.4245 8 6 7.9878 1.4422 -0.7122 9 17 9.5095 1.4435 -1.5477 10 6 7.9522 1.4406 0.6744 11 7 6.8099 1.4401 1.3302 12 6 5.6480 1.4407 0.6981 13 7 4.3306 1.4477 1.1182 14 6 3.8912 1.4543 2.4200 15 1 3.0155 2.0251 2.6914 16 6 4.5733 0.7270 3.3869 17 7 4.3689 0.9744 4.6610 18 14 5.7813 -0.6032 2.8760 19 1 7.1562 -0.0424 2.8573 20 1 5.7185 -1.7274 3.8442 21 1 5.4296 -1.0970 1.5204 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 6.8031 1.4433 -2.5045 30 1 8.8798 1.4397 1.2277 31 1 4.8456 0.4668 5.3362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057793285.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:15 Heat of formation + Delta-G solvation = 49.809204 kcal Electronic energy + Delta-G solvation = -17784.564075 eV Core-core repulsion = 14898.667490 eV Total energy + Delta-G solvation = -2885.896585 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.27687 -39.59275 -37.47674 -36.18875 -35.70377 -34.12227 -32.35410 -30.92221 -28.20553 -27.32221 -24.21248 -24.00457 -22.53429 -21.23298 -20.35981 -18.64881 -18.13888 -17.30328 -16.90992 -16.36536 -15.87781 -15.51583 -15.12285 -14.82172 -14.51598 -14.40154 -14.13286 -13.81282 -13.32262 -13.17402 -12.95094 -12.62844 -12.47112 -12.23447 -12.12987 -12.02929 -11.80368 -11.67592 -11.51086 -10.98652 -10.04558 -9.67143 -9.29830 -8.90418 -6.67529 -0.20691 0.17483 0.95962 1.13439 1.24947 1.30306 1.81399 1.93926 2.09919 2.63344 2.79752 3.20727 3.59064 3.75773 3.83987 4.05614 4.15544 4.18184 4.34205 4.61364 4.70632 4.77937 4.84287 4.96746 5.02169 5.11701 5.21390 5.30127 5.45620 5.47375 5.70400 5.83601 6.52539 6.62593 6.97657 7.12189 8.17810 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.008346 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.994241 B = 3354.169528 C = 4486.763960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C -0.024 4.024 4 C 0.241 3.759 5 N -0.515 5.515 6 C -0.018 4.018 7 C -0.017 4.017 8 C -0.101 4.101 9 Cl -0.036 7.036 10 C 0.119 3.881 11 N -0.478 5.478 12 C 0.155 3.845 13 N -0.310 5.310 14 C -0.363 4.363 15 H 0.113 0.887 16 C 0.068 3.932 17 N -0.856 5.856 18 Si 0.938 3.062 19 H -0.220 1.220 20 H -0.286 1.286 21 H -0.301 1.301 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.190 0.810 31 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -1.271 -9.166 9.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.063 4.063 4 C -0.021 4.021 5 N -0.237 5.237 6 C -0.145 4.145 7 C -0.045 4.045 8 C -0.133 4.133 9 Cl -0.007 7.007 10 C -0.052 4.052 11 N -0.191 5.191 12 C -0.081 4.081 13 N 0.017 4.983 14 C -0.490 4.490 15 H 0.131 0.869 16 C -0.144 4.144 17 N -0.486 5.486 18 Si 0.765 3.235 19 H -0.144 1.144 20 H -0.214 1.214 21 H -0.228 1.228 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.184 0.816 30 H 0.207 0.793 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.533 -1.266 -8.703 8.927 hybrid contribution 0.924 -0.514 0.273 1.092 sum 2.457 -1.780 -8.430 8.959 Atomic orbital electron populations 1.21692 0.92564 1.02629 1.02781 1.21394 0.97951 0.94456 1.01286 1.20210 0.81772 0.99623 1.04698 1.24363 0.96922 1.00891 0.79952 1.70240 0.99834 1.25766 1.27843 1.19750 0.93814 1.09658 0.91255 1.20602 0.86967 0.95852 1.01051 1.21383 0.88092 1.10740 0.93131 1.98332 1.27665 1.97148 1.77594 1.22833 0.95044 0.97134 0.90221 1.66514 0.96844 1.15040 1.40736 1.19554 0.87257 1.09260 0.92017 1.41556 1.02033 1.47463 1.07297 1.19225 1.16211 1.33109 0.80433 0.86933 1.25694 0.96726 0.97555 0.94437 1.69704 1.40162 1.37975 1.00776 0.85815 0.83430 0.77921 0.76350 1.14383 1.21373 1.22831 0.91668 0.92337 0.90849 0.94113 0.92052 0.86997 0.89678 0.81561 0.79298 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.91 71.98 0.71 -2.46 16 2 C -0.11 -3.49 5.92 30.59 0.18 -3.31 16 3 C -0.02 -0.83 5.49 29.85 0.16 -0.66 16 4 C 0.24 10.74 7.08 137.74 0.98 11.71 16 5 N -0.52 -23.04 11.27 -179.44 -2.02 -25.06 16 6 C -0.02 -0.80 7.24 39.49 0.29 -0.51 16 7 C -0.02 -0.61 10.02 22.67 0.23 -0.38 16 8 C -0.10 -3.35 6.34 22.41 0.14 -3.21 16 9 Cl -0.04 -0.91 28.98 -2.72 -0.08 -0.99 16 10 C 0.12 4.44 10.89 84.82 0.92 5.36 16 11 N -0.48 -22.44 6.18 -192.34 -1.19 -23.62 16 12 C 0.16 7.69 5.84 133.72 0.78 8.47 16 13 N -0.31 -15.71 2.53 -338.21 -0.86 -16.56 16 14 C -0.36 -19.50 9.92 83.98 0.83 -18.67 16 15 H 0.11 6.15 7.61 -2.91 -0.02 6.13 16 16 C 0.07 3.70 5.44 84.92 0.46 4.16 16 17 N -0.86 -46.91 13.95 21.65 0.30 -46.61 16 18 Si 0.94 46.08 24.46 68.60 1.68 47.76 16 19 H -0.22 -10.36 6.00 99.48 0.60 -9.76 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.30 -16.00 6.95 99.48 0.69 -15.31 16 22 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.08 2.89 7.45 -2.39 -0.02 2.88 16 29 H 0.17 4.95 8.06 -2.91 -0.02 4.92 16 30 H 0.19 5.63 8.06 -2.91 -0.02 5.60 16 31 H 0.29 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -62.81 279.85 4.54 -58.27 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.02 Total: 6.31 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 5.69 Total: 0.51 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.77 Total: -111.86 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.68 Total: 47.76 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -62.81 4.54 -58.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057793285.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.078 kcal (2) G-P(sol) polarization free energy of solvation -62.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds