Wall clock time and date at job start Mon Mar 30 2020 06:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47227 * 2 1 4 4 C 1.50694 * 109.47638 * 120.00478 * 2 1 3 5 5 N 1.30100 * 124.98508 * 300.21093 * 4 2 1 6 6 C 1.35780 * 109.61943 * 180.26658 * 5 4 2 7 7 C 1.39791 * 133.79707 * 179.75593 * 6 5 4 8 8 C 1.38348 * 118.15031 * 179.97438 * 7 6 5 9 9 Cl 1.73601 * 120.24063 * 179.97438 * 8 7 6 10 10 C 1.38714 * 119.51951 * 0.02562 * 8 7 6 11 11 N 1.31718 * 121.32048 * 0.02562 * 10 8 7 12 12 C 1.32262 * 121.60559 * 359.97438 * 11 10 8 13 13 N 1.36595 * 124.99066 * 119.99955 * 4 2 1 14 14 C 1.37391 * 126.33638 * 359.97438 * 13 4 2 15 15 H 1.08001 * 120.00085 * 333.72731 * 14 13 4 16 16 C 1.38910 * 120.00087 * 153.72544 * 14 13 4 17 17 N 1.31377 * 119.99979 * 334.31431 * 16 14 13 18 18 Si 1.86804 * 119.99979 * 154.31131 * 16 14 13 19 19 H 1.48493 * 109.47128 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.47496 * 300.00609 * 18 16 14 21 21 H 1.48504 * 109.46630 * 60.00324 * 18 16 14 22 22 H 1.08994 * 109.47603 * 59.99334 * 1 2 3 23 23 H 1.09003 * 109.46902 * 180.02562 * 1 2 3 24 24 H 1.09011 * 109.46969 * 299.99512 * 1 2 3 25 25 H 1.09002 * 109.46862 * 240.00770 * 2 1 3 26 26 H 1.08997 * 109.47674 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47380 * 300.00648 * 3 2 1 28 28 H 1.09005 * 109.47034 * 59.99997 * 3 2 1 29 29 H 1.08001 * 120.92440 * 359.94813 * 7 6 5 30 30 H 1.07997 * 119.34142 * 180.02562 * 10 8 7 31 31 H 0.96996 * 120.00143 * 354.12432 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.7755 -0.3539 2.4548 6 6 2.3875 -1.2067 3.3160 7 6 2.4534 -1.2924 4.7097 8 6 3.1904 -2.3226 5.2662 9 17 3.3094 -2.4799 6.9910 10 6 3.8344 -3.2282 4.4360 11 7 3.7597 -3.1280 3.1248 12 6 3.0689 -2.1626 2.5416 13 7 2.8211 -1.8257 1.2236 14 6 3.2876 -2.4863 0.1129 15 1 2.7412 -2.4315 -0.8171 16 6 4.4619 -3.2246 0.1860 17 7 5.3749 -2.9197 1.0803 18 14 4.7431 -4.6509 -0.9870 19 1 6.0629 -5.2705 -0.7056 20 1 3.6714 -5.6622 -0.8027 21 1 4.7187 -4.1533 -2.3860 22 1 -0.3634 0.5139 -0.8898 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5137 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 1.9436 -0.5742 5.3347 30 1 4.4086 -4.0315 4.8735 31 1 5.2686 -2.1290 1.6318 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057793296.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:17 Heat of formation + Delta-G solvation = 60.717618 kcal Electronic energy + Delta-G solvation = -17888.245351 eV Core-core repulsion = 15002.821790 eV Total energy + Delta-G solvation = -2885.423561 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.34876 -37.77799 -35.94710 -34.80994 -34.25411 -31.61706 -30.33145 -28.27938 -26.78648 -25.17158 -23.68745 -21.98318 -21.23587 -19.52536 -18.08602 -17.08387 -16.06150 -15.53531 -14.95576 -14.58703 -14.05440 -13.72576 -13.64569 -12.99867 -12.90726 -12.43560 -12.27039 -12.02129 -11.79749 -11.26834 -11.13145 -11.06141 -10.80994 -10.66061 -10.57390 -10.47982 -10.41727 -10.16061 -9.74207 -8.96680 -8.25036 -7.93549 -7.45940 -7.17164 -4.58736 1.62752 2.04617 2.61182 3.08035 3.16088 3.33181 3.66948 3.75721 4.08590 4.59795 4.78589 4.89723 5.34184 5.43798 5.48233 5.56967 5.57672 5.83664 5.94846 5.96938 6.15949 6.20452 6.24213 6.33078 6.57755 6.60888 6.62529 6.79110 6.97653 7.42666 7.52930 7.81241 8.44113 8.59876 8.92429 9.08607 10.05902 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.008983 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.340684 B = 3116.240300 C = 4710.885645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.001 4.001 3 C -0.134 4.134 4 C 0.214 3.786 5 N -0.506 5.506 6 C -0.006 4.006 7 C -0.027 4.027 8 C -0.111 4.111 9 Cl -0.085 7.085 10 C 0.107 3.893 11 N -0.414 5.414 12 C 0.173 3.827 13 N -0.266 5.266 14 C -0.435 4.435 15 H 0.111 0.889 16 C 0.032 3.968 17 N -0.773 5.773 18 Si 1.083 2.917 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.278 1.278 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.131 0.869 30 H 0.154 0.846 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 2.114 0.595 4.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 C -0.192 4.192 4 C -0.046 4.046 5 N -0.228 5.228 6 C -0.135 4.135 7 C -0.055 4.055 8 C -0.144 4.144 9 Cl -0.057 7.057 10 C -0.068 4.068 11 N -0.124 5.124 12 C -0.066 4.066 13 N 0.066 4.934 14 C -0.563 4.563 15 H 0.129 0.871 16 C -0.189 4.189 17 N -0.396 5.396 18 Si 0.906 3.094 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.204 1.204 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.171 0.829 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.835 0.984 -0.204 3.008 hybrid contribution -0.896 1.082 0.978 1.711 sum -3.731 2.066 0.774 4.334 Atomic orbital electron populations 1.21753 0.93998 1.01799 1.01827 1.19420 0.95563 0.95143 0.91989 1.21721 1.01103 0.94647 1.01729 1.23079 0.99637 0.87356 0.94574 1.70061 1.26781 1.27681 0.98238 1.19219 1.03124 0.97920 0.93285 1.20142 0.97316 0.96449 0.91575 1.21416 1.07416 1.01573 0.83973 1.98295 1.97565 1.97704 1.12172 1.22196 0.99289 0.98388 0.86922 1.66604 1.15165 1.20631 1.09958 1.18961 1.03602 0.97769 0.86300 1.41337 1.31531 1.17159 1.03423 1.20750 1.11603 1.33716 0.90244 0.87099 1.26762 0.90559 1.01182 1.00388 1.70523 1.30980 1.23056 1.15038 0.83316 0.77555 0.74461 0.74068 1.19602 1.20225 1.20395 0.92481 0.92979 0.91781 0.89466 0.92858 0.92491 0.91850 0.85070 0.82916 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.17 37.16 0.34 -1.76 16 2 C 0.00 -0.02 3.25 -91.77 -0.30 -0.31 16 3 C -0.13 -2.13 9.17 37.16 0.34 -1.78 16 4 C 0.21 4.92 6.34 -154.31 -0.98 3.94 16 5 N -0.51 -11.95 11.27 -8.07 -0.09 -12.04 16 6 C -0.01 -0.13 7.24 -84.63 -0.61 -0.75 16 7 C -0.03 -0.56 10.02 -38.96 -0.39 -0.95 16 8 C -0.11 -2.17 6.34 -39.37 -0.25 -2.42 16 9 Cl -0.09 -1.36 28.98 -51.86 -1.50 -2.87 16 10 C 0.11 2.27 10.96 -17.42 -0.19 2.08 16 11 N -0.41 -10.45 8.17 -12.15 -0.10 -10.55 16 12 C 0.17 4.49 6.36 -155.28 -0.99 3.51 16 13 N -0.27 -6.83 2.78 -58.25 -0.16 -6.99 16 14 C -0.44 -11.04 9.39 -14.81 -0.14 -11.18 16 15 H 0.11 2.60 7.15 -52.49 -0.38 2.23 16 16 C 0.03 0.80 4.99 -17.50 -0.09 0.72 16 17 N -0.77 -21.03 12.05 55.49 0.67 -20.37 16 18 Si 1.08 21.79 29.99 -169.99 -5.10 16.69 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 25 H 0.09 1.58 6.83 -51.93 -0.35 1.22 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 30 H 0.15 2.81 8.06 -52.49 -0.42 2.38 16 31 H 0.29 8.24 6.70 -40.82 -0.27 7.96 16 LS Contribution 283.42 15.07 4.27 4.27 Total: -1.00 -28.77 283.42 -8.45 -37.22 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -3.18 Total: 3.54 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -3.25 Total: -8.90 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.32 Total: -49.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.10 Total: 16.69 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.50 Total: -2.87 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.77 -8.45 -37.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057793296.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.937 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds