Wall clock time and date at job start Mon Mar 30 2020 06:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47227 * 2 1 4 4 C 1.50694 * 109.47638 * 120.00478 * 2 1 3 5 5 N 1.30100 * 124.98508 * 300.21093 * 4 2 1 6 6 C 1.35780 * 109.61943 * 180.26658 * 5 4 2 7 7 C 1.39791 * 133.79707 * 179.75593 * 6 5 4 8 8 C 1.38348 * 118.15031 * 179.97438 * 7 6 5 9 9 Cl 1.73601 * 120.24063 * 179.97438 * 8 7 6 10 10 C 1.38714 * 119.51951 * 0.02562 * 8 7 6 11 11 N 1.31718 * 121.32048 * 0.02562 * 10 8 7 12 12 C 1.32262 * 121.60559 * 359.97438 * 11 10 8 13 13 N 1.36595 * 124.99066 * 119.99955 * 4 2 1 14 14 C 1.37391 * 126.33638 * 359.97438 * 13 4 2 15 15 H 1.08001 * 120.00085 * 333.72731 * 14 13 4 16 16 C 1.38910 * 120.00087 * 153.72544 * 14 13 4 17 17 N 1.31377 * 119.99979 * 334.31431 * 16 14 13 18 18 Si 1.86804 * 119.99979 * 154.31131 * 16 14 13 19 19 H 1.48493 * 109.47128 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.47496 * 300.00609 * 18 16 14 21 21 H 1.48504 * 109.46630 * 60.00324 * 18 16 14 22 22 H 1.08994 * 109.47603 * 59.99334 * 1 2 3 23 23 H 1.09003 * 109.46902 * 180.02562 * 1 2 3 24 24 H 1.09011 * 109.46969 * 299.99512 * 1 2 3 25 25 H 1.09002 * 109.46862 * 240.00770 * 2 1 3 26 26 H 1.08997 * 109.47674 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47380 * 300.00648 * 3 2 1 28 28 H 1.09005 * 109.47034 * 59.99997 * 3 2 1 29 29 H 1.08001 * 120.92440 * 359.94813 * 7 6 5 30 30 H 1.07997 * 119.34142 * 180.02562 * 10 8 7 31 31 H 0.96996 * 120.00143 * 354.12432 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.7755 -0.3539 2.4548 6 6 2.3875 -1.2067 3.3160 7 6 2.4534 -1.2924 4.7097 8 6 3.1904 -2.3226 5.2662 9 17 3.3094 -2.4799 6.9910 10 6 3.8344 -3.2282 4.4360 11 7 3.7597 -3.1280 3.1248 12 6 3.0689 -2.1626 2.5416 13 7 2.8211 -1.8257 1.2236 14 6 3.2876 -2.4863 0.1129 15 1 2.7412 -2.4315 -0.8171 16 6 4.4619 -3.2246 0.1860 17 7 5.3749 -2.9197 1.0803 18 14 4.7431 -4.6509 -0.9870 19 1 6.0629 -5.2705 -0.7056 20 1 3.6714 -5.6622 -0.8027 21 1 4.7187 -4.1533 -2.3860 22 1 -0.3634 0.5139 -0.8898 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5137 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 1.9436 -0.5742 5.3347 30 1 4.4086 -4.0315 4.8735 31 1 5.2686 -2.1290 1.6318 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057793296.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:17 Heat of formation + Delta-G solvation = 45.524274 kcal Electronic energy + Delta-G solvation = -17888.904184 eV Core-core repulsion = 15002.821790 eV Total energy + Delta-G solvation = -2886.082394 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.12290 -39.47820 -37.43828 -36.53444 -35.78214 -33.41608 -32.10060 -29.99392 -28.03975 -27.03504 -25.30042 -23.74342 -22.91274 -21.24280 -19.79065 -18.78438 -17.87622 -17.18501 -16.75861 -16.18210 -15.63285 -15.33737 -15.10847 -14.57806 -14.47908 -14.04230 -13.89389 -13.60916 -13.04792 -12.88080 -12.61248 -12.52564 -12.38169 -12.13157 -12.07401 -12.01662 -11.98812 -11.75874 -11.47453 -10.76144 -10.03382 -9.71329 -9.25716 -9.04821 -6.52450 -0.07218 0.30669 1.04974 1.46730 1.54550 1.76946 1.96139 2.03432 2.42109 2.80533 2.96025 3.28323 3.75029 3.81231 3.90649 4.08030 4.18647 4.22137 4.41012 4.61622 4.79001 4.80901 4.90043 4.93870 4.98784 5.06737 5.27001 5.32346 5.34066 5.61019 5.68733 5.90809 6.60731 6.81260 7.11035 7.28824 8.10344 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.008983 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.340684 B = 3116.240300 C = 4710.885645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.007 4.007 3 C -0.125 4.125 4 C 0.214 3.786 5 N -0.515 5.515 6 C -0.029 4.029 7 C -0.026 4.026 8 C -0.101 4.101 9 Cl -0.044 7.044 10 C 0.109 3.891 11 N -0.453 5.453 12 C 0.145 3.855 13 N -0.293 5.293 14 C -0.460 4.460 15 H 0.121 0.879 16 C -0.005 4.005 17 N -0.804 5.804 18 Si 1.131 2.869 19 H -0.277 1.277 20 H -0.273 1.273 21 H -0.248 1.248 22 H 0.095 0.905 23 H 0.039 0.961 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.033 0.967 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.158 0.842 30 H 0.179 0.821 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 2.359 0.667 5.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.027 4.027 3 C -0.183 4.183 4 C -0.047 4.047 5 N -0.237 5.237 6 C -0.158 4.158 7 C -0.054 4.054 8 C -0.134 4.134 9 Cl -0.015 7.015 10 C -0.065 4.065 11 N -0.164 5.164 12 C -0.093 4.093 13 N 0.037 4.963 14 C -0.586 4.586 15 H 0.138 0.862 16 C -0.218 4.218 17 N -0.428 5.428 18 Si 0.947 3.053 19 H -0.202 1.202 20 H -0.198 1.198 21 H -0.172 1.172 22 H 0.114 0.886 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.052 0.948 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.175 0.825 30 H 0.196 0.804 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.797 1.246 -0.119 3.998 hybrid contribution -0.662 1.058 1.203 1.734 sum -4.459 2.304 1.084 5.135 Atomic orbital electron populations 1.21697 0.91655 1.01561 1.03457 1.19738 0.97419 0.95805 0.89733 1.21675 0.99817 0.93375 1.03450 1.24157 0.97940 0.86648 0.95981 1.70084 1.27214 1.27809 0.98581 1.19720 1.03461 0.97860 0.94716 1.20469 0.97233 0.97135 0.90585 1.21397 1.05640 1.00208 0.86142 1.98312 1.97331 1.97521 1.08340 1.22755 0.98579 0.98907 0.86245 1.66588 1.16335 1.21671 1.11766 1.19410 1.04296 0.98611 0.86975 1.41620 1.32819 1.18307 1.03568 1.21033 1.12096 1.34624 0.90894 0.86161 1.28210 0.90096 1.02727 1.00799 1.70647 1.32133 1.23127 1.16880 0.82777 0.76988 0.71719 0.73800 1.20240 1.19825 1.17161 0.88585 0.94148 0.92335 0.89634 0.94798 0.88509 0.92314 0.82456 0.80390 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.17 71.98 0.66 -3.00 16 2 C -0.01 -0.24 3.25 -11.54 -0.04 -0.27 16 3 C -0.13 -3.81 9.17 71.98 0.66 -3.15 16 4 C 0.21 9.99 6.34 137.74 0.87 10.87 16 5 N -0.52 -24.55 11.27 -179.43 -2.02 -26.57 16 6 C -0.03 -1.41 7.24 39.49 0.29 -1.12 16 7 C -0.03 -1.06 10.02 22.67 0.23 -0.83 16 8 C -0.10 -3.81 6.34 22.41 0.14 -3.67 16 9 Cl -0.04 -1.27 28.98 -2.72 -0.08 -1.35 16 10 C 0.11 4.60 10.96 84.82 0.93 5.53 16 11 N -0.45 -23.38 8.17 -192.35 -1.57 -24.95 16 12 C 0.14 7.74 6.36 133.72 0.85 8.59 16 13 N -0.29 -15.49 2.78 -338.21 -0.94 -16.43 16 14 C -0.46 -23.91 9.39 83.98 0.79 -23.12 16 15 H 0.12 5.74 7.15 -2.91 -0.02 5.72 16 16 C 0.00 -0.23 4.99 84.92 0.42 0.19 16 17 N -0.80 -45.36 12.05 21.65 0.26 -45.10 16 18 Si 1.13 44.15 29.99 68.60 2.06 46.20 16 19 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 20 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 21 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 22 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.09 3.05 6.83 -2.39 -0.02 3.03 16 26 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.16 5.44 8.06 -2.91 -0.02 5.41 16 30 H 0.18 6.33 8.06 -2.91 -0.02 6.30 16 31 H 0.26 15.92 6.70 -92.71 -0.62 15.30 16 Total: -1.00 -64.75 283.42 4.81 -59.94 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.30 Total: 18.23 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.80 Total: -9.99 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -4.27 Total: -113.04 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.06 Total: 46.20 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -64.75 4.81 -59.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057793296.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.468 kcal (2) G-P(sol) polarization free energy of solvation -64.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds