Wall clock time and date at job start Mon Mar 30 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30107 * 124.95836 * 2 1 4 4 C 1.35669 * 109.51019 * 180.02562 * 3 2 1 5 5 C 1.39832 * 133.86889 * 180.02562 * 4 3 2 6 6 C 1.38276 * 118.15223 * 179.21106 * 5 4 3 7 7 Cl 1.73595 * 120.23653 * 180.26270 * 6 5 4 8 8 C 1.38731 * 119.52392 * 0.65975 * 6 5 4 9 9 N 1.31679 * 121.33887 * 359.57827 * 8 6 5 10 10 C 1.32342 * 121.59891 * 359.97438 * 9 8 6 11 11 N 1.36113 * 124.95728 * 180.02562 * 2 1 3 12 12 C 1.46500 * 126.27806 * 359.96628 * 11 2 1 13 13 C 1.53006 * 109.46998 * 90.02247 * 12 11 2 14 14 C 1.50699 * 109.46866 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00305 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99832 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46901 * 89.99815 * 18 16 14 20 20 H 1.48488 * 109.47487 * 210.00255 * 18 16 14 21 21 H 1.48503 * 109.47026 * 330.00635 * 18 16 14 22 22 H 1.08999 * 109.46933 * 269.95293 * 1 2 3 23 23 H 1.08998 * 109.47456 * 29.95720 * 1 2 3 24 24 H 1.09007 * 109.47239 * 149.95597 * 1 2 3 25 25 H 1.08002 * 120.92532 * 359.97438 * 5 4 3 26 26 H 1.08004 * 119.32644 * 179.60024 * 8 6 5 27 27 H 1.09000 * 109.47175 * 330.02379 * 12 11 2 28 28 H 1.09001 * 109.47297 * 210.01886 * 12 11 2 29 29 H 1.08993 * 109.46955 * 300.00226 * 13 12 11 30 30 H 1.09000 * 109.47050 * 60.00054 * 13 12 11 31 31 H 0.97002 * 120.00008 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2524 1.0663 0.0000 4 6 3.5601 0.7049 -0.0006 5 6 4.7627 1.4185 -0.0004 6 6 5.9458 0.7030 0.0156 7 17 7.4699 1.5340 0.0236 8 6 5.9062 -0.6838 0.0169 9 7 4.7624 -1.3362 0.0115 10 6 3.6016 -0.7007 0.0050 11 7 2.2868 -1.1156 -0.0005 12 6 1.8156 -2.5027 -0.0004 13 6 1.6513 -2.9856 -1.4430 14 6 1.1660 -4.4123 -1.4429 15 1 0.9924 -4.9236 -0.5075 16 6 0.9445 -5.0652 -2.6368 17 7 0.5214 -6.3105 -2.6367 18 14 1.2453 -4.1812 -4.2547 19 1 2.6507 -4.3973 -4.6829 20 1 0.3246 -4.7159 -5.2897 21 1 1.0000 -2.7273 -4.0773 22 1 -0.3633 -0.0008 1.0277 23 1 -0.3634 0.8903 -0.5131 24 1 -0.3634 -0.8896 -0.5145 25 1 4.7672 2.4985 -0.0001 26 1 6.8323 -1.2394 0.0229 27 1 0.8560 -2.5604 0.5135 28 1 2.5414 -3.1330 0.5133 29 1 0.9256 -2.3553 -1.9567 30 1 2.6109 -2.9279 -1.9569 31 1 0.3652 -6.7697 -3.4767 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057879802.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:06 Heat of formation + Delta-G solvation = 68.482144 kcal Electronic energy + Delta-G solvation = -17203.031675 eV Core-core repulsion = 14317.944809 eV Total energy + Delta-G solvation = -2885.086866 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.31105 -38.60581 -36.57207 -35.13036 -33.03441 -31.77632 -31.42773 -29.85881 -27.93190 -25.48710 -22.99352 -22.85879 -21.35863 -19.84549 -18.03537 -17.46948 -16.68366 -16.19128 -15.88884 -14.74667 -14.35203 -13.96157 -13.72311 -13.41317 -13.21764 -13.08179 -12.98330 -12.58508 -12.37635 -11.94470 -11.64313 -11.42926 -11.26261 -11.09557 -10.72231 -10.36783 -10.03508 -10.00190 -9.49473 -9.18897 -8.72430 -8.47615 -8.33147 -6.23055 -4.24837 0.74885 1.11345 1.90702 2.57697 2.80014 3.20049 3.27871 3.30592 3.73667 4.08405 4.29057 4.29949 4.64363 4.72235 4.95660 5.08894 5.14942 5.30374 5.47411 5.55154 5.76244 5.82595 5.86722 5.99529 6.14631 6.23067 6.51701 6.84872 7.01212 7.10931 7.51455 7.80664 7.86547 8.27062 8.77333 9.37274 10.89316 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.022251 B = 0.005339 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.046103 B = 5242.793368 C = 5924.881206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.307 3.693 3 N -0.498 5.498 4 C 0.013 3.987 5 C -0.017 4.017 6 C -0.104 4.104 7 Cl -0.059 7.059 8 C 0.143 3.857 9 N -0.453 5.453 10 C 0.243 3.757 11 N -0.464 5.464 12 C 0.116 3.884 13 C -0.021 4.021 14 C -0.528 4.528 15 H 0.077 0.923 16 C 0.077 3.923 17 N -0.894 5.894 18 Si 0.877 3.123 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.267 1.267 22 H 0.091 0.909 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.147 0.853 26 H 0.171 0.829 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.592 14.693 5.885 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.041 3.959 3 N -0.219 5.219 4 C -0.110 4.110 5 C -0.045 4.045 6 C -0.136 4.136 7 Cl -0.030 7.030 8 C -0.027 4.027 9 N -0.164 5.164 10 C 0.006 3.994 11 N -0.153 5.153 12 C -0.003 4.003 13 C -0.059 4.059 14 C -0.566 4.566 15 H 0.095 0.905 16 C -0.126 4.126 17 N -0.531 5.531 18 Si 0.704 3.296 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.192 1.192 22 H 0.109 0.891 23 H 0.115 0.885 24 H 0.112 0.888 25 H 0.165 0.835 26 H 0.188 0.812 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.212 14.338 5.773 16.658 hybrid contribution 0.663 0.365 -0.996 1.251 sum 6.875 14.703 4.776 16.919 Atomic orbital electron populations 1.20505 0.83559 1.05536 1.04456 1.23764 0.96087 0.80233 0.95831 1.70417 0.99856 1.27497 1.24164 1.19531 0.92893 0.91425 1.07112 1.20418 0.87557 1.00478 0.96033 1.21555 0.87524 0.93735 1.10803 1.98357 1.29079 1.78389 1.97202 1.22507 0.95162 0.89166 0.95856 1.66528 0.95757 1.39806 1.14329 1.19060 0.86483 0.90807 1.03039 1.45730 1.02854 1.09625 1.57078 1.22268 1.00619 0.75232 1.02199 1.19907 0.97437 0.98022 0.90530 1.20800 1.45947 0.94849 0.94987 0.90467 1.24912 0.94083 0.94609 0.99037 1.69881 1.45292 1.10678 1.27279 0.86825 0.78646 0.80448 0.83692 1.20066 1.20973 1.19199 0.89072 0.88471 0.88818 0.83481 0.81170 0.88926 0.88865 0.96002 0.96185 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 9.95 36.00 0.36 -0.59 16 2 C 0.31 4.92 7.85 -154.76 -1.22 3.70 16 3 N -0.50 -8.47 11.28 -8.19 -0.09 -8.56 16 4 C 0.01 0.22 7.24 -84.67 -0.61 -0.39 16 5 C -0.02 -0.24 10.01 -38.97 -0.39 -0.63 16 6 C -0.10 -1.35 6.34 -39.39 -0.25 -1.60 16 7 Cl -0.06 -0.62 28.98 -51.86 -1.50 -2.13 16 8 C 0.14 2.00 10.96 -17.44 -0.19 1.81 16 9 N -0.45 -8.00 10.38 -12.24 -0.13 -8.13 16 10 C 0.24 4.46 8.01 -155.60 -1.25 3.21 16 11 N -0.46 -8.32 2.80 -112.96 -0.32 -8.64 16 12 C 0.12 2.17 5.68 -4.04 -0.02 2.15 16 13 C -0.02 -0.47 4.37 -27.88 -0.12 -0.60 16 14 C -0.53 -14.10 9.66 -34.44 -0.33 -14.44 16 15 H 0.08 2.18 7.99 -52.48 -0.42 1.76 16 16 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 17 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 18 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 22 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.09 1.12 7.65 -51.92 -0.40 0.72 16 25 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 26 H 0.17 1.85 8.06 -52.48 -0.42 1.43 16 27 H 0.09 1.52 7.61 -51.93 -0.40 1.12 16 28 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 30 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 288.02 15.07 4.34 4.34 Total: -1.00 -31.14 288.02 -8.98 -40.12 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -3.26 Total: -2.64 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -4.12 Total: -5.33 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.24 Total: -50.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.14 -8.98 -40.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057879802.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.602 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds