Wall clock time and date at job start Mon Mar 30 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30107 * 124.95836 * 2 1 4 4 C 1.35669 * 109.51019 * 180.02562 * 3 2 1 5 5 C 1.39832 * 133.86889 * 180.02562 * 4 3 2 6 6 C 1.38276 * 118.15223 * 179.21106 * 5 4 3 7 7 Cl 1.73595 * 120.23653 * 180.26270 * 6 5 4 8 8 C 1.38731 * 119.52392 * 0.65975 * 6 5 4 9 9 N 1.31679 * 121.33887 * 359.57827 * 8 6 5 10 10 C 1.32342 * 121.59891 * 359.97438 * 9 8 6 11 11 N 1.36113 * 124.95728 * 180.02562 * 2 1 3 12 12 C 1.46500 * 126.27806 * 359.96628 * 11 2 1 13 13 C 1.53006 * 109.46998 * 90.02247 * 12 11 2 14 14 C 1.50699 * 109.46866 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00305 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99832 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46901 * 89.99815 * 18 16 14 20 20 H 1.48488 * 109.47487 * 210.00255 * 18 16 14 21 21 H 1.48503 * 109.47026 * 330.00635 * 18 16 14 22 22 H 1.08999 * 109.46933 * 269.95293 * 1 2 3 23 23 H 1.08998 * 109.47456 * 29.95720 * 1 2 3 24 24 H 1.09007 * 109.47239 * 149.95597 * 1 2 3 25 25 H 1.08002 * 120.92532 * 359.97438 * 5 4 3 26 26 H 1.08004 * 119.32644 * 179.60024 * 8 6 5 27 27 H 1.09000 * 109.47175 * 330.02379 * 12 11 2 28 28 H 1.09001 * 109.47297 * 210.01886 * 12 11 2 29 29 H 1.08993 * 109.46955 * 300.00226 * 13 12 11 30 30 H 1.09000 * 109.47050 * 60.00054 * 13 12 11 31 31 H 0.97002 * 120.00008 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2524 1.0663 0.0000 4 6 3.5601 0.7049 -0.0006 5 6 4.7627 1.4185 -0.0004 6 6 5.9458 0.7030 0.0156 7 17 7.4699 1.5340 0.0236 8 6 5.9062 -0.6838 0.0169 9 7 4.7624 -1.3362 0.0115 10 6 3.6016 -0.7007 0.0050 11 7 2.2868 -1.1156 -0.0005 12 6 1.8156 -2.5027 -0.0004 13 6 1.6513 -2.9856 -1.4430 14 6 1.1660 -4.4123 -1.4429 15 1 0.9924 -4.9236 -0.5075 16 6 0.9445 -5.0652 -2.6368 17 7 0.5214 -6.3105 -2.6367 18 14 1.2453 -4.1812 -4.2547 19 1 2.6507 -4.3973 -4.6829 20 1 0.3246 -4.7159 -5.2897 21 1 1.0000 -2.7273 -4.0773 22 1 -0.3633 -0.0008 1.0277 23 1 -0.3634 0.8903 -0.5131 24 1 -0.3634 -0.8896 -0.5145 25 1 4.7672 2.4985 -0.0001 26 1 6.8323 -1.2394 0.0229 27 1 0.8560 -2.5604 0.5135 28 1 2.5414 -3.1330 0.5133 29 1 0.9256 -2.3553 -1.9567 30 1 2.6109 -2.9279 -1.9569 31 1 0.3652 -6.7697 -3.4767 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057879802.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:06 Heat of formation + Delta-G solvation = 50.700260 kcal Electronic energy + Delta-G solvation = -17203.802755 eV Core-core repulsion = 14317.944809 eV Total energy + Delta-G solvation = -2885.857946 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.52217 -39.76282 -37.55633 -36.65026 -34.85665 -33.18321 -32.48710 -31.46776 -28.99221 -27.20861 -24.19950 -24.08966 -23.06804 -21.12837 -19.42627 -19.01024 -18.17385 -17.37118 -17.19255 -16.33528 -15.92594 -15.45780 -14.94280 -14.69428 -14.55739 -14.43591 -14.16198 -13.93371 -13.45966 -13.28559 -13.05821 -12.81210 -12.74168 -12.34676 -12.16998 -12.02193 -11.79925 -11.56497 -11.39454 -10.86202 -10.39248 -9.71325 -9.49682 -8.37625 -6.43059 -0.37628 -0.05132 0.87639 1.28187 1.30948 1.34431 1.39885 1.59727 2.26714 2.55174 2.96673 2.97664 3.12656 3.48178 3.65589 3.84823 3.87265 4.18719 4.23087 4.48767 4.52675 4.67760 4.70204 4.84087 4.93156 4.95081 5.14689 5.23250 5.37944 5.46218 5.88008 6.13544 6.58143 6.63438 6.68426 7.22247 8.77984 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.022251 B = 0.005339 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.046103 B = 5242.793368 C = 5924.881206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.302 3.698 3 N -0.511 5.511 4 C -0.004 4.004 5 C -0.015 4.015 6 C -0.095 4.095 7 Cl -0.031 7.031 8 C 0.145 3.855 9 N -0.488 5.488 10 C 0.211 3.789 11 N -0.476 5.476 12 C 0.131 3.869 13 C -0.011 4.011 14 C -0.529 4.529 15 H 0.051 0.949 16 C 0.022 3.978 17 N -0.938 5.938 18 Si 0.936 3.064 19 H -0.276 1.276 20 H -0.276 1.276 21 H -0.255 1.255 22 H 0.116 0.884 23 H 0.114 0.886 24 H 0.090 0.910 25 H 0.170 0.830 26 H 0.199 0.801 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.002 0.998 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.256 16.855 5.665 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.037 3.963 3 N -0.232 5.232 4 C -0.126 4.126 5 C -0.043 4.043 6 C -0.127 4.127 7 Cl -0.002 7.002 8 C -0.024 4.024 9 N -0.201 5.201 10 C -0.024 4.024 11 N -0.166 5.166 12 C 0.011 3.989 13 C -0.049 4.049 14 C -0.567 4.567 15 H 0.069 0.931 16 C -0.176 4.176 17 N -0.577 5.577 18 Si 0.761 3.239 19 H -0.202 1.202 20 H -0.201 1.201 21 H -0.178 1.178 22 H 0.135 0.865 23 H 0.132 0.868 24 H 0.108 0.892 25 H 0.188 0.812 26 H 0.215 0.785 27 H 0.133 0.867 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.021 0.979 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.890 16.536 5.563 18.758 hybrid contribution 0.603 -0.265 -0.847 1.073 sum 7.493 16.271 4.717 18.524 Atomic orbital electron populations 1.20718 0.80720 1.06143 1.06306 1.24583 0.97549 0.79422 0.94774 1.70427 1.00028 1.27793 1.24926 1.19869 0.93751 0.91249 1.07753 1.20725 0.86904 1.01600 0.95074 1.21565 0.88463 0.93539 1.09130 1.98373 1.27110 1.77755 1.96970 1.23039 0.95123 0.90048 0.94212 1.66535 0.96508 1.41094 1.15918 1.19400 0.86819 0.91707 1.04464 1.45682 1.03283 1.09351 1.58270 1.21898 1.01478 0.76039 0.99484 1.19716 0.96180 0.95765 0.93244 1.21086 1.44970 0.96717 0.93938 0.93096 1.25718 0.94085 0.95242 1.02603 1.70002 1.47082 1.12339 1.28317 0.85871 0.78381 0.79954 0.79702 1.20208 1.20109 1.17850 0.86529 0.86756 0.89156 0.81209 0.78455 0.86671 0.90096 0.95301 0.97942 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 9.95 71.23 0.71 -0.99 16 2 C 0.30 9.29 7.85 137.90 1.08 10.37 16 3 N -0.51 -16.69 11.28 -179.83 -2.03 -18.72 16 4 C 0.00 -0.14 7.24 39.52 0.29 0.14 16 5 C -0.02 -0.40 10.01 22.66 0.23 -0.17 16 6 C -0.10 -2.26 6.34 22.40 0.14 -2.12 16 7 Cl -0.03 -0.57 28.98 -2.72 -0.08 -0.65 16 8 C 0.14 3.84 10.96 84.83 0.93 4.77 16 9 N -0.49 -17.08 10.38 -192.62 -2.00 -19.07 16 10 C 0.21 7.69 8.01 133.83 1.07 8.76 16 11 N -0.48 -16.81 2.80 -511.29 -1.43 -18.24 16 12 C 0.13 4.89 5.68 86.38 0.49 5.38 16 13 C -0.01 -0.49 4.37 29.85 0.13 -0.36 16 14 C -0.53 -28.65 9.66 25.60 0.25 -28.40 16 15 H 0.05 2.96 7.99 -2.91 -0.02 2.93 16 16 C 0.02 1.26 5.47 84.65 0.46 1.72 16 17 N -0.94 -56.31 13.96 21.45 0.30 -56.01 16 18 Si 0.94 43.64 27.47 68.60 1.88 45.52 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 22 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.09 1.97 7.65 -2.38 -0.02 1.95 16 25 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 26 H 0.20 3.88 8.06 -2.91 -0.02 3.86 16 27 H 0.12 3.69 7.61 -2.39 -0.02 3.67 16 28 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.03 1.26 7.20 -2.39 -0.02 1.25 16 30 H 0.00 0.11 7.57 -2.39 -0.02 0.09 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -67.44 288.02 3.52 -63.92 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 1.09 Total: 4.14 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.78 Total: -0.89 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -5.16 Total: -112.05 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -67.44 3.52 -63.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057879802.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.621 kcal (2) G-P(sol) polarization free energy of solvation -67.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds