Wall clock time and date at job start Mon Mar 30 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38285 * 119.92640 * 2 1 4 4 C 1.38113 * 120.06737 * 180.02562 * 3 2 1 5 5 C 1.38872 * 119.93154 * 0.02562 * 4 3 2 6 6 N 1.39922 * 120.07374 * 180.02562 * 5 4 3 7 7 C 1.34778 * 120.00093 * 35.08003 * 6 5 4 8 8 O 1.21281 * 119.99700 * 355.37815 * 7 6 5 9 9 C 1.50703 * 120.00057 * 175.10703 * 7 6 5 10 10 H 1.08997 * 109.46909 * 40.27199 * 9 7 6 11 11 C 1.53005 * 109.46705 * 280.27540 * 9 7 6 12 12 S 1.80997 * 109.47273 * 160.27570 * 9 7 6 13 13 C 1.76200 * 99.99956 * 184.99843 * 12 9 7 14 14 H 1.07998 * 119.99920 * 359.97438 * 13 12 9 15 15 C 1.38794 * 119.99972 * 179.97438 * 13 12 9 16 16 N 1.31630 * 120.00160 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00207 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46789 * 89.99918 * 17 15 13 19 19 H 1.48495 * 109.47054 * 210.00206 * 17 15 13 20 20 H 1.48501 * 109.46649 * 329.99888 * 17 15 13 21 21 C 1.38874 * 119.85659 * 0.27034 * 5 4 3 22 22 C 1.38115 * 119.92809 * 359.43601 * 21 5 4 23 23 H 1.09003 * 109.47705 * 89.99879 * 1 2 3 24 24 H 1.09001 * 109.47214 * 210.00249 * 1 2 3 25 25 H 1.09007 * 109.47267 * 329.99989 * 1 2 3 26 26 H 1.08000 * 119.96595 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.03476 * 180.02562 * 4 3 2 28 28 H 0.97000 * 120.00061 * 215.08443 * 6 5 4 29 29 H 1.09000 * 109.47210 * 179.97438 * 11 9 7 30 30 H 1.08997 * 109.47064 * 300.00052 * 11 9 7 31 31 H 1.08994 * 109.47199 * 60.00042 * 11 9 7 32 32 H 0.97003 * 120.00126 * 179.97438 * 16 15 13 33 33 H 1.07995 * 120.03524 * 179.72329 * 21 5 4 34 34 H 1.07998 * 119.96543 * 180.29656 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2738 0.0001 -0.0016 6 7 5.6731 0.0000 -0.0016 7 6 6.3470 0.9546 0.6701 8 8 5.7435 1.8609 1.2042 9 6 7.8499 0.8925 0.7625 10 1 8.2600 0.5753 -0.1963 11 6 8.2531 -0.1095 1.8462 12 16 8.4967 2.5296 1.1835 13 6 10.2266 2.2116 1.0779 14 1 10.5792 1.2252 0.8151 15 6 11.1360 3.2287 1.3324 16 7 10.7062 4.4308 1.6532 17 14 12.9700 2.8914 1.2212 18 1 13.4388 3.1562 -0.1627 19 1 13.6945 3.7773 2.1674 20 1 13.2343 1.4725 1.5705 21 6 3.5780 -1.2017 -0.0078 22 6 2.1969 -1.1984 -0.0011 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5139 26 1 1.6551 2.1328 -0.0004 27 1 4.1162 2.1382 -0.0001 28 1 6.1581 -0.6869 -0.4851 29 1 9.3402 -0.1548 1.9128 30 1 7.8429 0.2077 2.8050 31 1 7.8636 -1.0954 1.5927 32 1 11.3418 5.1416 1.8315 33 1 4.1162 -2.1380 -0.0132 34 1 1.6551 -2.1326 -0.0011 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058254413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:40 Heat of formation + Delta-G solvation = -41.936365 kcal Electronic energy + Delta-G solvation = -16933.545175 eV Core-core repulsion = 14149.254253 eV Total energy + Delta-G solvation = -2784.290922 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.58254 -39.61608 -36.09380 -34.59723 -34.27188 -32.13561 -31.85067 -27.79522 -27.36463 -25.36690 -23.93646 -22.50456 -21.44329 -19.97741 -18.71875 -18.00075 -16.89227 -16.57075 -16.50061 -16.15581 -15.82417 -15.15349 -14.90070 -14.59198 -14.51917 -14.35823 -13.84088 -13.53921 -13.18877 -12.98027 -12.96787 -12.90281 -12.79424 -12.49711 -12.43859 -12.01542 -11.63480 -11.21284 -11.13455 -10.78319 -10.19632 -9.85689 -8.97605 -8.68612 -8.34403 -6.12124 0.27948 0.47851 1.22093 1.42044 1.42668 1.52786 1.58555 2.12794 2.25618 2.85106 3.00369 3.28897 3.74104 3.98667 4.04848 4.05397 4.15131 4.19434 4.44925 4.51711 4.63599 4.69028 4.83499 4.89031 4.90911 5.10436 5.18035 5.20286 5.39330 5.43061 5.45135 5.56298 5.72017 6.12184 6.21023 6.36402 7.07301 7.08615 8.74875 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.055401 B = 0.003787 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.281968 B = 7391.917695 C = 7751.363067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.108 4.108 3 C -0.115 4.115 4 C -0.146 4.146 5 C 0.121 3.879 6 N -0.657 5.657 7 C 0.538 3.462 8 O -0.543 6.543 9 C -0.100 4.100 10 H 0.110 0.890 11 C -0.120 4.120 12 S -0.149 6.149 13 C -0.534 4.534 14 H 0.086 0.914 15 C 0.012 3.988 16 N -0.913 5.913 17 Si 0.996 3.004 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.257 1.257 21 C -0.137 4.137 22 C -0.102 4.102 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.131 0.869 27 H 0.106 0.894 28 H 0.427 0.573 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.270 0.730 33 H 0.154 0.846 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.205 -15.586 -5.390 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C -0.134 4.134 4 C -0.167 4.167 5 C 0.028 3.972 6 N -0.304 5.304 7 C 0.325 3.675 8 O -0.419 6.419 9 C -0.232 4.232 10 H 0.129 0.871 11 C -0.179 4.179 12 S 0.079 5.921 13 C -0.682 4.682 14 H 0.104 0.896 15 C -0.192 4.192 16 N -0.550 5.550 17 Si 0.818 3.182 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.180 1.180 21 C -0.157 4.157 22 C -0.121 4.121 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.149 0.851 27 H 0.124 0.876 28 H 0.265 0.735 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.171 0.829 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.079 -13.791 -4.685 21.695 hybrid contribution 2.174 -0.683 -0.451 2.323 sum -13.905 -14.474 -5.137 20.718 Atomic orbital electron populations 1.20804 0.88952 1.03610 1.03168 1.20288 0.97792 0.92624 1.00139 1.21125 0.92797 0.99123 1.00332 1.21294 0.95381 0.97642 1.02347 1.18024 0.82436 0.94791 1.01999 1.43295 1.04708 1.30925 1.51440 1.20314 0.89204 0.81071 0.76948 1.90681 1.70061 1.34698 1.46505 1.23209 0.93090 1.02325 1.04607 0.87147 1.21818 1.02615 0.97233 0.96271 1.85560 1.05409 1.09832 1.91280 1.23150 0.90652 1.00078 1.54338 0.89578 1.26106 1.05091 0.94072 0.93935 1.70186 1.36918 1.02671 1.45210 0.84980 0.75991 0.78845 0.78352 1.19400 1.20560 1.18038 1.21199 0.95109 0.96239 1.03151 1.21222 0.93061 0.98681 0.99095 0.90126 0.90007 0.91461 0.85148 0.87626 0.73450 0.91483 0.93359 0.89108 0.92102 0.82865 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.23 0.71 -0.69 16 2 C -0.11 -2.14 5.88 -19.85 -0.12 -2.25 16 3 C -0.12 -2.94 9.69 22.25 0.22 -2.73 16 4 C -0.15 -4.67 8.70 22.39 0.19 -4.47 16 5 C 0.12 3.39 6.30 38.15 0.24 3.63 16 6 N -0.66 -18.32 5.34 -303.51 -1.62 -19.94 16 7 C 0.54 20.47 6.85 87.66 0.60 21.07 16 8 O -0.54 -25.53 13.48 -3.03 -0.04 -25.58 16 9 C -0.10 -3.97 2.99 29.85 0.09 -3.88 16 10 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 11 C -0.12 -4.10 9.04 71.98 0.65 -3.45 16 12 S -0.15 -8.20 20.13 -56.49 -1.14 -9.34 16 13 C -0.53 -29.86 8.86 67.95 0.60 -29.25 16 14 H 0.09 4.44 7.13 -2.91 -0.02 4.42 16 15 C 0.01 0.70 5.49 84.86 0.47 1.17 16 16 N -0.91 -55.88 13.22 21.65 0.29 -55.60 16 17 Si 1.00 43.24 29.55 68.60 2.03 45.26 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 21 C -0.14 -2.77 9.97 22.39 0.22 -2.54 16 22 C -0.10 -1.80 9.69 22.25 0.22 -1.59 16 23 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 25 H 0.07 0.85 8.08 -2.38 -0.02 0.83 16 26 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 27 H 0.11 4.10 6.23 -2.91 -0.02 4.08 16 28 H 0.43 8.38 8.82 -92.71 -0.82 7.56 16 29 H 0.07 2.43 6.93 -2.39 -0.02 2.41 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -75.45 306.85 3.90 -71.55 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.29 Total: 18.63 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 4.09 Total: -24.99 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -1.33 Total: -75.54 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.04 Total: -25.58 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.14 Total: -9.34 kcal Total: -75.45 3.90 -71.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.610 kcal (2) G-P(sol) polarization free energy of solvation -75.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds