Wall clock time and date at job start Mon Mar 30 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38134 * 120.03734 * 2 1 4 4 C 1.38262 * 120.07296 * 179.97438 * 3 2 1 5 5 C 1.38308 * 120.13738 * 359.80091 * 4 3 2 6 6 C 1.38087 * 120.07310 * 0.45583 * 5 4 3 7 7 C 1.38850 * 120.03404 * 179.97438 * 2 1 3 8 8 N 1.39921 * 120.07433 * 0.04519 * 7 2 1 9 9 C 1.34778 * 120.00526 * 145.27351 * 8 7 2 10 10 O 1.21286 * 119.99786 * 4.49537 * 9 8 7 11 11 C 1.50696 * 119.99929 * 184.49475 * 9 8 7 12 12 H 1.08997 * 109.47163 * 324.99817 * 11 9 8 13 13 C 1.52997 * 109.47211 * 84.99998 * 11 9 8 14 14 S 1.81008 * 109.46878 * 204.99956 * 11 9 8 15 15 C 1.76203 * 100.00044 * 174.99976 * 14 11 9 16 16 H 1.08004 * 119.99583 * 0.02562 * 15 14 11 17 17 C 1.38796 * 120.00112 * 179.97438 * 15 14 11 18 18 N 1.31630 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00081 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47224 * 59.99949 * 19 17 15 21 21 H 1.48500 * 109.47008 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47034 * 300.00238 * 19 17 15 23 23 H 1.08998 * 109.47139 * 270.01943 * 1 2 3 24 24 H 1.08994 * 109.46977 * 30.01957 * 1 2 3 25 25 H 1.09000 * 109.46881 * 150.01921 * 1 2 3 26 26 H 1.07998 * 119.96544 * 359.97438 * 3 2 1 27 27 H 1.07994 * 119.92940 * 180.02562 * 4 3 2 28 28 H 1.07999 * 119.96247 * 180.25671 * 5 4 3 29 29 H 1.08000 * 120.03711 * 179.79394 * 6 5 4 30 30 H 0.97003 * 119.99755 * 325.27274 * 8 7 2 31 31 H 1.09007 * 109.47339 * 179.97438 * 13 11 9 32 32 H 1.08994 * 109.47503 * 299.99895 * 13 11 9 33 33 H 1.08997 * 109.47205 * 59.99845 * 13 11 9 34 34 H 0.97001 * 120.00333 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5811 1.1967 0.0005 5 6 4.2762 0.0010 0.0052 6 6 3.5910 -1.1978 -0.0001 7 6 2.2020 -1.2021 0.0005 8 7 1.5047 -2.4151 0.0001 9 6 2.0009 -3.4776 -0.6644 10 8 3.0900 -3.4073 -1.1934 11 6 1.2025 -4.7528 -0.7499 12 1 0.6481 -4.8973 0.1773 13 6 0.2224 -4.6632 -1.9214 14 16 2.3236 -6.1504 -1.0068 15 6 1.1755 -7.4841 -0.9179 16 1 0.1278 -7.2841 -0.7480 17 6 1.6173 -8.7913 -1.0673 18 7 2.8941 -9.0349 -1.2748 19 14 0.4000 -10.2051 -0.9738 20 1 -0.6234 -10.0484 -2.0384 21 1 1.1189 -11.4906 -1.1629 22 1 -0.2633 -10.2001 0.3549 23 1 -0.3633 0.0003 1.0276 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6585 2.1311 -0.0004 27 1 4.1193 2.1329 0.0010 28 1 5.3562 0.0050 0.0098 29 1 4.1344 -2.1312 0.0002 30 1 0.6640 -2.4915 0.4781 31 1 -0.3548 -5.5858 -1.9836 32 1 -0.4527 -3.8216 -1.7668 33 1 0.7767 -4.5187 -2.8487 34 1 3.2029 -9.9485 -1.3789 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058254416.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:42 Heat of formation + Delta-G solvation = -19.755903 kcal Electronic energy + Delta-G solvation = -17200.968284 eV Core-core repulsion = 14417.639179 eV Total energy + Delta-G solvation = -2783.329105 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43564 -38.37604 -34.63605 -32.67790 -32.54163 -32.44844 -29.47032 -26.90035 -25.55075 -24.39198 -22.59485 -21.25245 -20.13365 -18.14641 -17.41553 -16.52585 -15.72586 -15.29361 -14.87486 -14.67624 -14.45575 -13.86709 -13.78449 -13.55363 -13.12587 -13.00458 -12.50803 -12.27623 -11.99450 -11.83921 -11.43968 -11.32482 -11.19421 -11.05726 -11.01139 -10.67115 -10.18590 -9.78190 -9.33214 -9.09665 -8.69169 -8.27384 -7.99591 -6.57596 -6.25879 -3.97258 1.31450 1.44707 2.83306 3.01695 3.20790 3.24865 3.27452 3.58718 3.84788 4.15201 4.77182 4.84470 4.95114 5.09588 5.13050 5.20296 5.42177 5.45552 5.51532 5.57285 5.58787 5.73428 5.77219 5.87449 6.00605 6.11457 6.31637 6.38668 6.48462 6.56766 6.64415 6.67707 7.13545 7.53479 7.56215 8.31023 8.42049 9.19551 10.81588 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.042807 B = 0.004268 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.945291 B = 6558.571472 C = 7049.414228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.140 4.140 5 C -0.107 4.107 6 C -0.119 4.119 7 C 0.155 3.845 8 N -0.677 5.677 9 C 0.537 3.463 10 O -0.499 6.499 11 C -0.120 4.120 12 H 0.089 0.911 13 C -0.128 4.128 14 S -0.057 6.057 15 C -0.532 4.532 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.274 1.274 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.143 0.857 30 H 0.408 0.592 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 17.698 3.714 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.122 4.122 3 C -0.125 4.125 4 C -0.159 4.159 5 C -0.126 4.126 6 C -0.139 4.139 7 C 0.060 3.940 8 N -0.323 5.323 9 C 0.324 3.676 10 O -0.372 6.372 11 C -0.252 4.252 12 H 0.107 0.893 13 C -0.187 4.187 14 S 0.171 5.829 15 C -0.680 4.680 16 H 0.093 0.907 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.161 0.839 30 H 0.244 0.756 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.849 17.486 3.097 17.985 hybrid contribution -2.477 -0.937 0.530 2.701 sum -5.326 16.549 3.627 17.759 Atomic orbital electron populations 1.20719 0.91155 1.03019 1.02158 1.19685 0.95996 0.91931 1.04594 1.20773 0.94168 0.96645 1.00870 1.21064 0.94203 0.97966 1.02628 1.21059 0.99933 0.91975 0.99629 1.21420 0.92769 0.99724 0.99979 1.17669 0.91478 0.84811 1.00053 1.43674 1.26008 1.09645 1.52989 1.20529 0.86387 0.83985 0.76668 1.90683 1.20005 1.82185 1.44292 1.23316 1.02067 0.97210 1.02584 0.89301 1.21913 0.97750 1.01967 0.97080 1.85343 1.10004 0.93219 1.94295 1.22796 0.95513 0.92218 1.57447 0.90719 1.24986 0.95776 0.98262 0.94494 1.69999 1.13657 1.21147 1.45510 0.86231 0.80339 0.80189 0.78808 1.19884 1.20815 1.19933 0.91277 0.91301 0.91598 0.86079 0.86297 0.85898 0.83941 0.75580 0.90455 0.93982 0.91613 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.48 36.01 0.34 -0.68 16 2 C -0.12 -1.43 5.90 -104.43 -0.62 -2.04 16 3 C -0.11 -1.14 9.70 -39.61 -0.38 -1.53 16 4 C -0.14 -1.54 10.04 -39.55 -0.40 -1.94 16 5 C -0.11 -1.37 10.04 -39.61 -0.40 -1.77 16 6 C -0.12 -1.84 8.70 -39.39 -0.34 -2.18 16 7 C 0.15 2.25 6.29 -83.69 -0.53 1.73 16 8 N -0.68 -9.89 4.75 -9.86 -0.05 -9.93 16 9 C 0.54 10.07 6.80 -10.99 -0.07 10.00 16 10 O -0.50 -11.06 13.55 5.55 0.08 -10.99 16 11 C -0.12 -2.38 2.99 -27.89 -0.08 -2.46 16 12 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 13 C -0.13 -2.26 9.04 37.16 0.34 -1.92 16 14 S -0.06 -1.49 20.19 -107.50 -2.17 -3.66 16 15 C -0.53 -14.61 8.86 30.94 0.27 -14.33 16 16 H 0.07 1.93 7.13 -52.48 -0.37 1.56 16 17 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 18 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 19 Si 0.92 20.98 29.55 -169.99 -5.02 15.95 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.07 0.61 7.17 -51.93 -0.37 0.23 16 26 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.14 2.53 6.20 -52.49 -0.33 2.20 16 30 H 0.41 4.68 7.85 -40.82 -0.32 4.36 16 31 H 0.08 1.44 6.93 -51.92 -0.36 1.08 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 304.32 15.07 4.59 4.59 Total: -1.00 -32.48 304.32 -8.08 -40.56 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.27 Total: 3.58 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.97 Total: -15.16 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.69 Total: -34.88 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.17 Total: -3.66 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.48 -8.08 -40.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254416.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.807 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds