Wall clock time and date at job start Mon Mar 30 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38134 * 120.03734 * 2 1 4 4 C 1.38262 * 120.07296 * 179.97438 * 3 2 1 5 5 C 1.38308 * 120.13738 * 359.80091 * 4 3 2 6 6 C 1.38087 * 120.07310 * 0.45583 * 5 4 3 7 7 C 1.38850 * 120.03404 * 179.97438 * 2 1 3 8 8 N 1.39921 * 120.07433 * 0.04519 * 7 2 1 9 9 C 1.34778 * 120.00526 * 145.27351 * 8 7 2 10 10 O 1.21286 * 119.99786 * 4.49537 * 9 8 7 11 11 C 1.50696 * 119.99929 * 184.49475 * 9 8 7 12 12 H 1.08997 * 109.47163 * 324.99817 * 11 9 8 13 13 C 1.52997 * 109.47211 * 84.99998 * 11 9 8 14 14 S 1.81008 * 109.46878 * 204.99956 * 11 9 8 15 15 C 1.76203 * 100.00044 * 174.99976 * 14 11 9 16 16 H 1.08004 * 119.99583 * 0.02562 * 15 14 11 17 17 C 1.38796 * 120.00112 * 179.97438 * 15 14 11 18 18 N 1.31630 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00081 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47224 * 59.99949 * 19 17 15 21 21 H 1.48500 * 109.47008 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47034 * 300.00238 * 19 17 15 23 23 H 1.08998 * 109.47139 * 270.01943 * 1 2 3 24 24 H 1.08994 * 109.46977 * 30.01957 * 1 2 3 25 25 H 1.09000 * 109.46881 * 150.01921 * 1 2 3 26 26 H 1.07998 * 119.96544 * 359.97438 * 3 2 1 27 27 H 1.07994 * 119.92940 * 180.02562 * 4 3 2 28 28 H 1.07999 * 119.96247 * 180.25671 * 5 4 3 29 29 H 1.08000 * 120.03711 * 179.79394 * 6 5 4 30 30 H 0.97003 * 119.99755 * 325.27274 * 8 7 2 31 31 H 1.09007 * 109.47339 * 179.97438 * 13 11 9 32 32 H 1.08994 * 109.47503 * 299.99895 * 13 11 9 33 33 H 1.08997 * 109.47205 * 59.99845 * 13 11 9 34 34 H 0.97001 * 120.00333 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5811 1.1967 0.0005 5 6 4.2762 0.0010 0.0052 6 6 3.5910 -1.1978 -0.0001 7 6 2.2020 -1.2021 0.0005 8 7 1.5047 -2.4151 0.0001 9 6 2.0009 -3.4776 -0.6644 10 8 3.0900 -3.4073 -1.1934 11 6 1.2025 -4.7528 -0.7499 12 1 0.6481 -4.8973 0.1773 13 6 0.2224 -4.6632 -1.9214 14 16 2.3236 -6.1504 -1.0068 15 6 1.1755 -7.4841 -0.9179 16 1 0.1278 -7.2841 -0.7480 17 6 1.6173 -8.7913 -1.0673 18 7 2.8941 -9.0349 -1.2748 19 14 0.4000 -10.2051 -0.9738 20 1 -0.6234 -10.0484 -2.0384 21 1 1.1189 -11.4906 -1.1629 22 1 -0.2633 -10.2001 0.3549 23 1 -0.3633 0.0003 1.0276 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6585 2.1311 -0.0004 27 1 4.1193 2.1329 0.0010 28 1 5.3562 0.0050 0.0098 29 1 4.1344 -2.1312 0.0002 30 1 0.6640 -2.4915 0.4781 31 1 -0.3548 -5.5858 -1.9836 32 1 -0.4527 -3.8216 -1.7668 33 1 0.7767 -4.5187 -2.8487 34 1 3.2029 -9.9485 -1.3789 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058254416.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:42 Heat of formation + Delta-G solvation = -39.969507 kcal Electronic energy + Delta-G solvation = -17201.844812 eV Core-core repulsion = 14417.639179 eV Total energy + Delta-G solvation = -2784.205633 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67363 -39.56574 -35.89864 -34.59264 -34.11954 -33.46896 -30.53688 -27.81006 -27.60966 -25.79196 -23.74499 -22.23698 -21.51103 -19.95869 -18.65954 -18.01653 -16.89051 -16.77547 -16.57344 -16.18179 -15.82056 -15.08824 -14.96303 -14.66862 -14.60378 -14.08606 -13.77936 -13.51503 -13.20341 -13.03001 -12.96451 -12.89525 -12.78917 -12.46424 -12.31644 -12.16482 -11.65516 -11.36085 -11.12204 -10.79092 -10.21260 -9.65249 -9.07008 -8.69080 -8.34237 -6.12243 0.29749 0.46603 1.20199 1.41794 1.43877 1.52250 1.61240 2.12373 2.25948 2.86496 3.00600 3.28456 3.73135 3.96356 3.97847 4.03467 4.18749 4.25206 4.43024 4.53959 4.61881 4.67686 4.81552 4.84379 4.86026 5.03706 5.19326 5.29783 5.38896 5.44817 5.47044 5.59772 5.64430 6.12880 6.20797 6.34291 7.06572 7.07704 8.74839 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.042807 B = 0.004268 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.945291 B = 6558.571472 C = 7049.414228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.114 4.114 3 C -0.105 4.105 4 C -0.131 4.131 5 C -0.120 4.120 6 C -0.149 4.149 7 C 0.124 3.876 8 N -0.655 5.655 9 C 0.538 3.462 10 O -0.543 6.543 11 C -0.099 4.099 12 H 0.109 0.891 13 C -0.120 4.120 14 S -0.149 6.149 15 C -0.535 4.535 16 H 0.087 0.913 17 C 0.014 3.986 18 N -0.913 5.913 19 Si 0.996 3.004 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.261 1.261 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.133 0.867 29 H 0.106 0.894 30 H 0.424 0.576 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 20.012 4.385 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.116 4.116 3 C -0.123 4.123 4 C -0.150 4.150 5 C -0.138 4.138 6 C -0.169 4.169 7 C 0.030 3.970 8 N -0.302 5.302 9 C 0.325 3.675 10 O -0.419 6.419 11 C -0.231 4.231 12 H 0.128 0.872 13 C -0.179 4.179 14 S 0.079 5.921 15 C -0.683 4.683 16 H 0.105 0.895 17 C -0.191 4.191 18 N -0.550 5.550 19 Si 0.817 3.183 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.186 1.186 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.175 0.825 27 H 0.169 0.831 28 H 0.151 0.849 29 H 0.124 0.876 30 H 0.263 0.737 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.787 19.846 3.795 21.018 hybrid contribution -1.552 -1.426 0.361 2.138 sum -7.338 18.420 4.156 20.259 Atomic orbital electron populations 1.20819 0.88736 1.03906 1.03617 1.20058 0.97763 0.91029 1.02774 1.21262 0.94252 0.97611 0.99149 1.21471 0.94777 0.98275 1.00444 1.21257 1.00751 0.91913 0.99899 1.21324 0.93720 0.99406 1.02463 1.17873 0.91304 0.85417 1.02387 1.43312 1.26261 1.08854 1.51766 1.20322 0.85734 0.84555 0.76882 1.90679 1.21758 1.82922 1.46527 1.23189 1.00849 0.94653 1.04415 0.87248 1.21814 0.97484 1.03401 0.95236 1.85537 1.14451 0.97331 1.94741 1.23115 0.95825 0.92472 1.56908 0.89548 1.26093 0.97715 1.01384 0.93872 1.70177 1.16055 1.21730 1.47009 0.85041 0.77686 0.76033 0.79496 1.18619 1.20658 1.18601 0.89409 0.89328 0.91847 0.82464 0.83089 0.84861 0.87620 0.73660 0.91364 0.89281 0.93378 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.48 71.24 0.68 -0.91 16 2 C -0.11 -2.39 5.90 -19.74 -0.12 -2.51 16 3 C -0.10 -1.85 9.70 22.25 0.22 -1.64 16 4 C -0.13 -2.51 10.04 22.29 0.22 -2.29 16 5 C -0.12 -3.01 10.04 22.25 0.22 -2.79 16 6 C -0.15 -4.78 8.70 22.39 0.19 -4.58 16 7 C 0.12 3.54 6.29 38.15 0.24 3.78 16 8 N -0.66 -18.67 4.75 -303.50 -1.44 -20.11 16 9 C 0.54 20.57 6.80 87.66 0.60 21.17 16 10 O -0.54 -25.48 13.55 -3.05 -0.04 -25.52 16 11 C -0.10 -3.92 2.99 29.85 0.09 -3.83 16 12 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 13 C -0.12 -4.13 9.04 71.98 0.65 -3.48 16 14 S -0.15 -8.16 20.19 -56.49 -1.14 -9.30 16 15 C -0.54 -29.82 8.86 67.95 0.60 -29.22 16 16 H 0.09 4.43 7.13 -2.91 -0.02 4.41 16 17 C 0.01 0.79 5.49 84.86 0.47 1.25 16 18 N -0.91 -55.72 13.22 21.65 0.29 -55.44 16 19 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 23 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.09 0.92 8.09 -2.39 -0.02 0.90 16 25 H 0.06 0.93 7.17 -2.39 -0.02 0.91 16 26 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 27 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 28 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.11 4.13 6.20 -2.91 -0.02 4.11 16 30 H 0.42 8.87 7.85 -92.71 -0.73 8.14 16 31 H 0.07 2.47 6.93 -2.38 -0.02 2.45 16 32 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -75.02 304.32 4.13 -70.89 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.38 Total: 19.48 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 4.06 Total: -25.06 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -1.15 Total: -75.55 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.04 Total: -25.52 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.14 Total: -9.30 kcal Total: -75.02 4.13 -70.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254416.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.918 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds