Wall clock time and date at job start Mon Mar 30 2020 06:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38136 * 120.03683 * 2 1 4 4 C 1.38263 * 120.06987 * 179.97438 * 3 2 1 5 5 C 1.38309 * 120.14171 * 0.04028 * 4 3 2 6 6 C 1.38093 * 120.06833 * 359.68029 * 5 4 3 7 7 C 1.38855 * 120.03306 * 179.97438 * 2 1 3 8 8 N 1.39923 * 120.06858 * 0.03023 * 7 2 1 9 9 C 1.34777 * 119.99860 * 155.43203 * 8 7 2 10 10 O 1.21294 * 120.00030 * 354.47513 * 9 8 7 11 11 C 1.50701 * 120.00088 * 174.47505 * 9 8 7 12 12 H 1.09003 * 109.46849 * 40.00176 * 11 9 8 13 13 C 1.52998 * 109.47054 * 279.99962 * 11 9 8 14 14 S 1.81004 * 109.47212 * 159.99850 * 11 9 8 15 15 C 1.76201 * 100.00040 * 185.00318 * 14 11 9 16 16 H 1.08005 * 119.99582 * 359.97438 * 15 14 11 17 17 C 1.38796 * 120.00055 * 180.02562 * 15 14 11 18 18 N 1.31628 * 119.99738 * 359.72139 * 17 15 14 19 19 Si 1.86801 * 119.99922 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46932 * 179.72155 * 19 17 15 21 21 H 1.48497 * 109.47037 * 299.72333 * 19 17 15 22 22 H 1.48499 * 109.46950 * 59.72643 * 19 17 15 23 23 H 1.08998 * 109.47464 * 270.02745 * 1 2 3 24 24 H 1.09003 * 109.46978 * 30.02088 * 1 2 3 25 25 H 1.09000 * 109.47640 * 150.02118 * 1 2 3 26 26 H 1.07995 * 119.96871 * 359.97438 * 3 2 1 27 27 H 1.07996 * 119.93028 * 180.02562 * 4 3 2 28 28 H 1.07994 * 119.96663 * 179.97438 * 5 4 3 29 29 H 1.08002 * 120.03667 * 180.31374 * 6 5 4 30 30 H 0.96992 * 120.00178 * 335.42974 * 8 7 2 31 31 H 1.09000 * 109.47057 * 179.97438 * 13 11 9 32 32 H 1.08996 * 109.47132 * 299.99862 * 13 11 9 33 33 H 1.08999 * 109.47039 * 60.00009 * 13 11 9 34 34 H 0.96996 * 120.00499 * 0.27740 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 0.0005 5 6 4.2762 0.0010 0.0002 6 6 3.5908 -1.1979 0.0061 7 6 2.2019 -1.2021 0.0005 8 7 1.5044 -2.4151 0.0004 9 6 2.0890 -3.5285 -0.4844 10 8 3.1793 -3.4607 -1.0116 11 6 1.3882 -4.8578 -0.3715 12 1 0.3242 -4.7254 -0.5681 13 6 1.5803 -5.4174 1.0395 14 16 2.0857 -6.0122 -1.5786 15 6 1.0133 -7.3897 -1.3398 16 1 0.2184 -7.3352 -0.6106 17 6 1.1906 -8.5452 -2.0881 18 7 2.1565 -8.6099 -2.9800 19 14 0.0540 -10.0058 -1.8345 20 1 0.4470 -11.1042 -2.7534 21 1 0.1572 -10.4750 -0.4294 22 1 -1.3455 -9.5992 -2.1192 23 1 -0.3634 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6585 2.1312 -0.0004 27 1 4.1193 2.1329 0.0010 28 1 5.3562 0.0049 0.0002 29 1 4.1342 -2.1312 0.0109 30 1 0.6003 -2.4547 0.3493 31 1 1.0730 -6.3787 1.1213 32 1 2.6442 -5.5498 1.2361 33 1 1.1602 -4.7223 1.7664 34 1 2.7469 -7.8516 -3.1114 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058254419.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:44 Heat of formation + Delta-G solvation = -23.013811 kcal Electronic energy + Delta-G solvation = -17227.676153 eV Core-core repulsion = 14444.205774 eV Total energy + Delta-G solvation = -2783.470378 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57416 -38.46040 -34.76252 -32.81728 -32.58348 -32.56970 -29.52926 -26.96070 -24.94262 -24.45950 -22.77101 -21.30167 -20.16038 -18.49564 -17.68014 -16.75419 -15.92208 -15.39980 -15.01124 -14.45362 -14.09579 -13.94960 -13.86610 -13.61616 -13.14936 -12.97131 -12.58664 -12.50402 -12.18192 -11.84495 -11.64080 -11.51484 -11.31143 -11.21776 -10.94843 -10.41225 -10.20693 -9.52051 -9.40895 -9.05714 -8.73705 -8.26929 -7.98256 -6.75060 -6.65864 -4.05222 1.27033 1.40030 2.67829 2.90502 3.31260 3.34731 3.41779 3.54656 3.82355 4.19687 4.69291 4.79565 4.82806 5.08326 5.15777 5.17783 5.29750 5.39644 5.43621 5.45960 5.51263 5.62960 5.67971 5.82431 5.89479 6.06288 6.20796 6.31173 6.41478 6.51401 6.56330 6.59568 7.07895 7.43491 7.87816 8.27737 8.45313 9.22186 10.77432 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.041979 B = 0.004232 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.841090 B = 6613.950293 C = 6934.540477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.125 4.125 3 C -0.101 4.101 4 C -0.144 4.144 5 C -0.103 4.103 6 C -0.130 4.130 7 C 0.159 3.841 8 N -0.673 5.673 9 C 0.535 3.465 10 O -0.496 6.496 11 C -0.099 4.099 12 H 0.092 0.908 13 C -0.129 4.129 14 S -0.112 6.112 15 C -0.603 4.603 16 H 0.068 0.932 17 C 0.036 3.964 18 N -0.883 5.883 19 Si 1.083 2.917 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.409 0.591 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 17.006 8.933 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.128 4.128 3 C -0.120 4.120 4 C -0.163 4.163 5 C -0.122 4.122 6 C -0.151 4.151 7 C 0.064 3.936 8 N -0.318 5.318 9 C 0.322 3.678 10 O -0.368 6.368 11 C -0.231 4.231 12 H 0.110 0.890 13 C -0.188 4.188 14 S 0.116 5.884 15 C -0.751 4.751 16 H 0.086 0.914 17 C -0.175 4.175 18 N -0.517 5.517 19 Si 0.909 3.091 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.164 0.836 30 H 0.245 0.755 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.748 15.530 7.291 17.245 hybrid contribution -1.367 1.397 1.568 2.505 sum -3.114 16.927 8.858 19.357 Atomic orbital electron populations 1.20719 0.91141 1.03064 1.02177 1.19603 0.95966 0.91833 1.05392 1.20769 0.94164 0.96617 1.00450 1.21058 0.94203 0.97982 1.03045 1.21053 0.99903 0.91951 0.99305 1.21487 0.92607 1.00010 1.00961 1.17706 0.91655 0.84737 0.99521 1.43678 1.18679 1.06967 1.62465 1.20524 0.86139 0.84803 0.76355 1.90663 1.20403 1.85621 1.40148 1.23111 1.02969 0.94640 1.02429 0.88958 1.21925 1.03242 1.01535 0.92148 1.84815 1.45393 1.11186 1.46994 1.23673 1.19832 1.01475 1.30156 0.91368 1.26039 0.98731 1.00192 0.92500 1.70805 1.15917 1.34081 1.30928 0.83343 0.74630 0.74771 0.76380 1.20283 1.21089 1.21136 0.91233 0.91132 0.91721 0.86009 0.86271 0.85903 0.83566 0.75477 0.90218 0.91615 0.93620 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.45 36.00 0.34 -0.69 16 2 C -0.13 -1.49 5.90 -104.43 -0.62 -2.11 16 3 C -0.10 -1.09 9.70 -39.61 -0.38 -1.48 16 4 C -0.14 -1.58 10.04 -39.55 -0.40 -1.98 16 5 C -0.10 -1.31 10.04 -39.61 -0.40 -1.70 16 6 C -0.13 -1.99 8.72 -39.39 -0.34 -2.34 16 7 C 0.16 2.30 6.41 -83.69 -0.54 1.77 16 8 N -0.67 -9.74 4.98 -9.86 -0.05 -9.79 16 9 C 0.53 9.94 6.81 -10.98 -0.07 9.86 16 10 O -0.50 -10.85 13.20 5.55 0.07 -10.78 16 11 C -0.10 -1.96 2.99 -27.88 -0.08 -2.05 16 12 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 13 C -0.13 -2.26 9.04 37.16 0.34 -1.92 16 14 S -0.11 -2.91 19.16 -107.50 -2.06 -4.97 16 15 C -0.60 -16.78 8.86 30.94 0.27 -16.50 16 16 H 0.07 1.81 7.13 -52.48 -0.37 1.43 16 17 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 18 N -0.88 -27.04 13.67 55.49 0.76 -26.28 16 19 Si 1.08 24.44 29.92 -169.99 -5.09 19.35 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 25 H 0.06 0.60 6.98 -51.93 -0.36 0.23 16 26 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.15 2.54 5.79 -52.49 -0.30 2.24 16 30 H 0.41 4.64 7.39 -40.82 -0.30 4.33 16 31 H 0.08 1.49 6.93 -51.93 -0.36 1.13 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.28 8.68 7.12 -40.82 -0.29 8.39 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -33.15 301.87 -7.96 -41.11 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.17 Total: 5.02 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -1.98 Total: -18.21 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.71 Total: -36.07 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.09 Total: 19.35 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.06 Total: -4.97 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.15 -7.96 -41.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254419.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.095 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds