Wall clock time and date at job start Mon Mar 30 2020 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38136 * 120.03683 * 2 1 4 4 C 1.38263 * 120.06987 * 179.97438 * 3 2 1 5 5 C 1.38309 * 120.14171 * 0.04028 * 4 3 2 6 6 C 1.38093 * 120.06833 * 359.68029 * 5 4 3 7 7 C 1.38855 * 120.03306 * 179.97438 * 2 1 3 8 8 N 1.39923 * 120.06858 * 0.03023 * 7 2 1 9 9 C 1.34777 * 119.99860 * 155.43203 * 8 7 2 10 10 O 1.21294 * 120.00030 * 354.47513 * 9 8 7 11 11 C 1.50701 * 120.00088 * 174.47505 * 9 8 7 12 12 H 1.09003 * 109.46849 * 40.00176 * 11 9 8 13 13 C 1.52998 * 109.47054 * 279.99962 * 11 9 8 14 14 S 1.81004 * 109.47212 * 159.99850 * 11 9 8 15 15 C 1.76201 * 100.00040 * 185.00318 * 14 11 9 16 16 H 1.08005 * 119.99582 * 359.97438 * 15 14 11 17 17 C 1.38796 * 120.00055 * 180.02562 * 15 14 11 18 18 N 1.31628 * 119.99738 * 359.72139 * 17 15 14 19 19 Si 1.86801 * 119.99922 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46932 * 179.72155 * 19 17 15 21 21 H 1.48497 * 109.47037 * 299.72333 * 19 17 15 22 22 H 1.48499 * 109.46950 * 59.72643 * 19 17 15 23 23 H 1.08998 * 109.47464 * 270.02745 * 1 2 3 24 24 H 1.09003 * 109.46978 * 30.02088 * 1 2 3 25 25 H 1.09000 * 109.47640 * 150.02118 * 1 2 3 26 26 H 1.07995 * 119.96871 * 359.97438 * 3 2 1 27 27 H 1.07996 * 119.93028 * 180.02562 * 4 3 2 28 28 H 1.07994 * 119.96663 * 179.97438 * 5 4 3 29 29 H 1.08002 * 120.03667 * 180.31374 * 6 5 4 30 30 H 0.96992 * 120.00178 * 335.42974 * 8 7 2 31 31 H 1.09000 * 109.47057 * 179.97438 * 13 11 9 32 32 H 1.08996 * 109.47132 * 299.99862 * 13 11 9 33 33 H 1.08999 * 109.47039 * 60.00009 * 13 11 9 34 34 H 0.96996 * 120.00499 * 0.27740 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 0.0005 5 6 4.2762 0.0010 0.0002 6 6 3.5908 -1.1979 0.0061 7 6 2.2019 -1.2021 0.0005 8 7 1.5044 -2.4151 0.0004 9 6 2.0890 -3.5285 -0.4844 10 8 3.1793 -3.4607 -1.0116 11 6 1.3882 -4.8578 -0.3715 12 1 0.3242 -4.7254 -0.5681 13 6 1.5803 -5.4174 1.0395 14 16 2.0857 -6.0122 -1.5786 15 6 1.0133 -7.3897 -1.3398 16 1 0.2184 -7.3352 -0.6106 17 6 1.1906 -8.5452 -2.0881 18 7 2.1565 -8.6099 -2.9800 19 14 0.0540 -10.0058 -1.8345 20 1 0.4470 -11.1042 -2.7534 21 1 0.1572 -10.4750 -0.4294 22 1 -1.3455 -9.5992 -2.1192 23 1 -0.3634 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6585 2.1312 -0.0004 27 1 4.1193 2.1329 0.0010 28 1 5.3562 0.0049 0.0002 29 1 4.1342 -2.1312 0.0109 30 1 0.6003 -2.4547 0.3493 31 1 1.0730 -6.3787 1.1213 32 1 2.6442 -5.5498 1.2361 33 1 1.1602 -4.7223 1.7664 34 1 2.7469 -7.8516 -3.1114 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058254419.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:43 Heat of formation + Delta-G solvation = -43.815432 kcal Electronic energy + Delta-G solvation = -17228.578178 eV Core-core repulsion = 14444.205774 eV Total energy + Delta-G solvation = -2784.372404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.81044 -39.62748 -36.01388 -34.74962 -34.27393 -33.50308 -30.58539 -27.81170 -27.09045 -25.87979 -23.91275 -22.27565 -21.53094 -20.45501 -18.88031 -18.19953 -17.18438 -16.65074 -16.49198 -15.76595 -15.62717 -15.40340 -14.98027 -14.73578 -14.67204 -14.28815 -14.09550 -13.65528 -13.33991 -13.17837 -13.04610 -12.94983 -12.71671 -12.36891 -12.17343 -11.95540 -11.58680 -11.39320 -11.08796 -10.84091 -10.28230 -9.68596 -9.04928 -8.90571 -8.88737 -6.26521 0.25326 0.43046 1.05557 1.48170 1.53996 1.60685 1.80248 1.98270 2.33942 2.84874 3.03729 3.11104 3.56657 3.89518 3.91663 3.93633 4.04592 4.22246 4.39031 4.48498 4.55657 4.57711 4.71490 4.78748 4.80505 4.99647 5.10304 5.24923 5.32651 5.40352 5.55290 5.61654 5.67726 6.09120 6.15473 6.26484 6.94308 7.07411 8.52341 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.041979 B = 0.004232 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.841090 B = 6613.950293 C = 6934.540477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.136 4.136 5 C -0.116 4.116 6 C -0.158 4.158 7 C 0.128 3.872 8 N -0.651 5.651 9 C 0.536 3.464 10 O -0.538 6.538 11 C -0.080 4.080 12 H 0.111 0.889 13 C -0.122 4.122 14 S -0.193 6.193 15 C -0.602 4.602 16 H 0.079 0.921 17 C -0.019 4.019 18 N -0.915 5.915 19 Si 1.134 2.866 20 H -0.283 1.283 21 H -0.263 1.263 22 H -0.263 1.263 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.425 0.575 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 19.246 10.624 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C -0.119 4.119 4 C -0.154 4.154 5 C -0.135 4.135 6 C -0.179 4.179 7 C 0.034 3.966 8 N -0.297 5.297 9 C 0.323 3.677 10 O -0.414 6.414 11 C -0.213 4.213 12 H 0.130 0.870 13 C -0.181 4.181 14 S 0.035 5.965 15 C -0.750 4.750 16 H 0.097 0.903 17 C -0.222 4.222 18 N -0.551 5.551 19 Si 0.952 3.048 20 H -0.208 1.208 21 H -0.188 1.188 22 H -0.187 1.187 23 H 0.108 0.892 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.175 0.825 27 H 0.169 0.831 28 H 0.152 0.848 29 H 0.132 0.868 30 H 0.264 0.736 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.199 17.831 9.022 20.420 hybrid contribution -0.588 0.942 1.109 1.569 sum -4.786 18.773 10.131 21.863 Atomic orbital electron populations 1.20818 0.88848 1.03789 1.03697 1.19984 0.97670 0.91029 1.03626 1.21251 0.94283 0.97547 0.98839 1.21467 0.94742 0.98349 1.00852 1.21267 1.00766 0.91884 0.99537 1.21405 0.93472 0.99815 1.03186 1.17911 0.91560 0.85291 1.01885 1.43319 1.19068 1.06031 1.61271 1.20278 0.85565 0.85391 0.76477 1.90665 1.22194 1.86193 1.42391 1.23052 1.03284 0.93584 1.01351 0.87047 1.21834 1.02506 1.02028 0.91714 1.85055 1.47121 1.13552 1.50800 1.23969 1.19593 1.01664 1.29741 0.90294 1.27766 0.99274 1.03515 0.91622 1.70923 1.17421 1.33636 1.33120 0.82741 0.73555 0.71185 0.77300 1.20812 1.18762 1.18743 0.89193 0.89277 0.92180 0.82484 0.83113 0.84772 0.86837 0.73562 0.91340 0.93161 0.88930 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.45 71.23 0.67 -0.96 16 2 C -0.12 -2.53 5.90 -19.74 -0.12 -2.65 16 3 C -0.10 -1.79 9.70 22.25 0.22 -1.57 16 4 C -0.14 -2.57 10.04 22.29 0.22 -2.34 16 5 C -0.12 -2.85 10.04 22.25 0.22 -2.63 16 6 C -0.16 -4.96 8.72 22.39 0.20 -4.76 16 7 C 0.13 3.60 6.41 38.15 0.24 3.84 16 8 N -0.65 -18.24 4.98 -303.49 -1.51 -19.75 16 9 C 0.54 20.20 6.81 87.66 0.60 20.80 16 10 O -0.54 -24.84 13.20 -3.07 -0.04 -24.88 16 11 C -0.08 -3.16 2.99 29.85 0.09 -3.07 16 12 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 13 C -0.12 -4.15 9.04 71.98 0.65 -3.50 16 14 S -0.19 -10.48 19.16 -56.49 -1.08 -11.56 16 15 C -0.60 -33.82 8.86 67.95 0.60 -33.22 16 16 H 0.08 4.13 7.13 -2.91 -0.02 4.10 16 17 C -0.02 -1.08 5.49 84.86 0.47 -0.61 16 18 N -0.92 -57.85 13.67 21.65 0.30 -57.55 16 19 Si 1.13 48.64 29.92 68.60 2.05 50.70 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 25 H 0.06 0.92 6.98 -2.39 -0.02 0.90 16 26 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 27 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 28 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.11 4.27 5.79 -2.91 -0.02 4.25 16 30 H 0.43 8.68 7.39 -92.71 -0.69 7.99 16 31 H 0.07 2.49 6.93 -2.39 -0.02 2.48 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.26 17.08 7.12 -92.71 -0.66 16.42 16 Total: -1.00 -76.31 301.87 4.31 -71.99 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.54 Total: 21.73 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 4.06 Total: -30.68 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -1.22 Total: -77.30 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.04 Total: -24.88 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.05 Total: 50.70 kcal Atomic # 16 Polarization: -10.48 SS G_CDS: -1.08 Total: -11.56 kcal Total: -76.31 4.31 -71.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254419.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.178 kcal (2) G-P(sol) polarization free energy of solvation -76.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds