Wall clock time and date at job start Mon Mar 30 2020 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38310 * 119.96471 * 2 1 4 4 C 1.38255 * 120.14472 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.06651 * 0.25712 * 4 3 2 6 6 C 1.38850 * 119.92980 * 359.51524 * 5 4 3 7 7 N 1.39933 * 120.07188 * 180.23431 * 6 5 4 8 8 C 1.34773 * 119.99893 * 213.53819 * 7 6 5 9 9 O 1.21286 * 120.00143 * 5.26726 * 8 7 6 10 10 C 1.50697 * 119.99910 * 185.27216 * 8 7 6 11 11 S 1.81408 * 109.47229 * 179.97438 * 10 8 7 12 12 C 1.81396 * 103.00180 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47100 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00379 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99962 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00298 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00363 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47311 * 89.99291 * 17 15 13 19 19 H 1.48498 * 109.47370 * 209.99936 * 17 15 13 20 20 H 1.48506 * 109.46727 * 329.99827 * 17 15 13 21 21 C 1.38087 * 119.96845 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47570 * 89.99625 * 1 2 3 23 23 H 1.09002 * 109.47009 * 209.99928 * 1 2 3 24 24 H 1.09003 * 109.47106 * 329.99674 * 1 2 3 25 25 H 1.08003 * 119.92745 * 0.02857 * 3 2 1 26 26 H 1.07997 * 119.96884 * 179.97438 * 4 3 2 27 27 H 1.08005 * 120.03626 * 179.72405 * 5 4 3 28 28 H 0.96994 * 120.00123 * 33.53113 * 7 6 5 29 29 H 1.08997 * 109.47511 * 299.99521 * 10 8 7 30 30 H 1.09001 * 109.47319 * 59.99916 * 10 8 7 31 31 H 1.09001 * 109.46724 * 299.99989 * 12 11 10 32 32 H 1.08998 * 109.47184 * 59.99676 * 12 11 10 33 33 H 0.96994 * 120.00267 * 180.02562 * 16 15 13 34 34 H 1.08000 * 120.02960 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2026 -0.0005 5 6 4.2761 0.0093 -0.0064 6 6 3.5856 -1.1953 -0.0017 7 7 4.2875 -2.4059 -0.0027 8 6 3.7812 -3.4778 -0.6437 9 8 2.7665 -3.3691 -1.2991 10 6 4.4758 -4.8116 -0.5461 11 16 3.5571 -6.0439 -1.5096 12 6 4.5305 -7.5560 -1.2723 13 6 3.8852 -8.6918 -2.0235 14 1 2.9798 -8.5213 -2.5870 15 6 4.4502 -9.9491 -1.9906 16 7 5.5525 -10.1571 -1.3041 17 14 3.6507 -11.3571 -2.9224 18 1 4.2031 -11.4162 -4.2995 19 1 3.9300 -12.6362 -2.2216 20 1 2.1834 -11.1380 -2.9867 21 6 2.1967 -1.1962 -0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6560 2.1325 0.0005 26 1 4.1168 2.1398 -0.0010 27 1 5.3561 0.0133 -0.0114 28 1 5.1384 -2.4735 0.4579 29 1 5.4884 -4.7237 -0.9396 30 1 4.5173 -5.1242 0.4973 31 1 5.5418 -7.3996 -1.6478 32 1 4.5707 -7.7994 -0.2106 33 1 5.9501 -11.0415 -1.2812 34 1 1.6567 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058256295.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:45 Heat of formation + Delta-G solvation = -20.572844 kcal Electronic energy + Delta-G solvation = -16484.570877 eV Core-core repulsion = 13701.206347 eV Total energy + Delta-G solvation = -2783.364530 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52188 -38.57462 -35.00673 -33.15760 -32.54531 -30.86644 -28.75669 -28.40339 -27.06054 -23.31720 -22.89985 -21.57336 -20.47035 -17.56939 -16.99195 -16.52847 -16.25120 -15.66326 -15.26252 -14.87325 -14.46589 -14.05186 -13.85815 -13.67194 -13.24013 -12.94165 -12.55319 -12.43421 -12.32996 -12.21729 -11.91518 -11.67895 -11.31175 -10.88301 -10.72671 -10.37680 -10.06372 -9.83996 -9.58187 -8.82671 -8.80991 -8.62552 -8.19960 -6.69242 -6.21096 -4.24982 1.15689 1.29419 2.25229 2.63280 3.13550 3.26616 3.32142 3.38120 3.69112 3.79390 4.35243 4.62172 4.74388 4.86947 5.02613 5.16458 5.17657 5.21763 5.29958 5.44355 5.51000 5.52076 5.60635 5.79181 5.96714 6.22452 6.24390 6.37830 6.54178 6.95545 7.05215 7.06278 7.27646 7.74248 7.99336 8.11788 8.77260 9.38323 10.90436 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.047541 B = 0.003247 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.827757 B = 8620.284986 C = 9088.377555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.098 4.098 5 C -0.156 4.156 6 C 0.159 3.841 7 N -0.679 5.679 8 C 0.531 3.469 9 O -0.492 6.492 10 C -0.132 4.132 11 S -0.232 6.232 12 C 0.074 3.926 13 C -0.511 4.511 14 H 0.068 0.932 15 C 0.065 3.935 16 N -0.894 5.894 17 Si 0.907 3.093 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.123 4.123 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.411 0.589 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 21.038 5.947 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.068 4.068 3 C -0.161 4.161 4 C -0.117 4.117 5 C -0.177 4.177 6 C 0.064 3.936 7 N -0.325 5.325 8 C 0.318 3.682 9 O -0.364 6.364 10 C -0.283 4.283 11 S -0.007 6.007 12 C -0.073 4.073 13 C -0.550 4.550 14 H 0.086 0.914 15 C -0.138 4.138 16 N -0.532 5.532 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.143 4.143 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.138 0.862 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.247 0.753 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.487 21.033 4.939 21.885 hybrid contribution 1.534 -1.030 0.551 1.928 sum -1.953 20.004 5.490 20.835 Atomic orbital electron populations 1.20796 0.90984 1.02695 1.02612 1.19815 0.96223 0.92557 0.98187 1.20981 0.94218 0.97418 1.03481 1.20877 0.94153 0.97283 0.99381 1.20867 0.99790 0.91221 1.05783 1.17752 0.91518 0.85106 0.99225 1.43581 1.24887 1.09292 1.54745 1.20213 0.85061 0.84778 0.78136 1.90747 1.23763 1.84128 1.37768 1.23363 1.03768 0.95275 1.05862 1.87274 1.41100 1.06158 1.66156 1.21180 0.96264 0.89425 1.00392 1.20639 1.10988 0.92220 1.31164 0.91375 1.24959 0.94911 0.98562 0.95399 1.69951 1.19429 1.23072 1.40768 0.86337 0.79901 0.80706 0.79658 1.20315 1.20977 1.19465 1.21107 0.92558 0.98972 1.01680 0.90918 0.91360 0.91581 0.86166 0.85821 0.85825 0.75331 0.87769 0.87659 0.94579 0.94566 0.92501 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.00 0.36 -0.70 16 2 C -0.07 -0.77 5.88 -104.65 -0.62 -1.39 16 3 C -0.14 -1.41 9.70 -39.55 -0.38 -1.79 16 4 C -0.10 -0.92 10.04 -39.61 -0.40 -1.32 16 5 C -0.16 -1.61 9.96 -39.39 -0.39 -2.00 16 6 C 0.16 2.01 6.28 -83.69 -0.53 1.48 16 7 N -0.68 -8.18 5.34 -9.86 -0.05 -8.23 16 8 C 0.53 8.44 7.59 -10.99 -0.08 8.36 16 9 O -0.49 -9.68 13.55 5.55 0.08 -9.61 16 10 C -0.13 -2.13 6.43 36.00 0.23 -1.90 16 11 S -0.23 -5.20 20.79 -107.50 -2.24 -7.44 16 12 C 0.07 1.91 5.70 36.00 0.21 2.12 16 13 C -0.51 -14.45 9.13 -34.44 -0.31 -14.76 16 14 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 16 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 17 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.12 -1.68 8.31 -39.40 -0.33 -2.01 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 24 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 25 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 26 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 27 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 28 H 0.41 3.46 8.82 -40.82 -0.36 3.10 16 29 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.11 1.50 8.14 -51.92 -0.42 1.08 16 31 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.14 2.12 6.42 -52.49 -0.34 1.78 16 LS Contribution 310.61 15.07 4.68 4.68 Total: -1.00 -32.54 310.61 -8.61 -41.15 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.46 Total: 0.30 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.34 Total: -12.18 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.68 Total: -33.31 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -2.24 Total: -7.44 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.54 -8.61 -41.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256295.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.581 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds