Wall clock time and date at job start Mon Mar 30 2020 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38310 * 119.96471 * 2 1 4 4 C 1.38255 * 120.14472 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.06651 * 0.25712 * 4 3 2 6 6 C 1.38850 * 119.92980 * 359.51524 * 5 4 3 7 7 N 1.39933 * 120.07188 * 180.23431 * 6 5 4 8 8 C 1.34773 * 119.99893 * 213.53819 * 7 6 5 9 9 O 1.21286 * 120.00143 * 5.26726 * 8 7 6 10 10 C 1.50697 * 119.99910 * 185.27216 * 8 7 6 11 11 S 1.81408 * 109.47229 * 179.97438 * 10 8 7 12 12 C 1.81396 * 103.00180 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47100 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00379 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99962 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00298 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00363 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47311 * 89.99291 * 17 15 13 19 19 H 1.48498 * 109.47370 * 209.99936 * 17 15 13 20 20 H 1.48506 * 109.46727 * 329.99827 * 17 15 13 21 21 C 1.38087 * 119.96845 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47570 * 89.99625 * 1 2 3 23 23 H 1.09002 * 109.47009 * 209.99928 * 1 2 3 24 24 H 1.09003 * 109.47106 * 329.99674 * 1 2 3 25 25 H 1.08003 * 119.92745 * 0.02857 * 3 2 1 26 26 H 1.07997 * 119.96884 * 179.97438 * 4 3 2 27 27 H 1.08005 * 120.03626 * 179.72405 * 5 4 3 28 28 H 0.96994 * 120.00123 * 33.53113 * 7 6 5 29 29 H 1.08997 * 109.47511 * 299.99521 * 10 8 7 30 30 H 1.09001 * 109.47319 * 59.99916 * 10 8 7 31 31 H 1.09001 * 109.46724 * 299.99989 * 12 11 10 32 32 H 1.08998 * 109.47184 * 59.99676 * 12 11 10 33 33 H 0.96994 * 120.00267 * 180.02562 * 16 15 13 34 34 H 1.08000 * 120.02960 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2026 -0.0005 5 6 4.2761 0.0093 -0.0064 6 6 3.5856 -1.1953 -0.0017 7 7 4.2875 -2.4059 -0.0027 8 6 3.7812 -3.4778 -0.6437 9 8 2.7665 -3.3691 -1.2991 10 6 4.4758 -4.8116 -0.5461 11 16 3.5571 -6.0439 -1.5096 12 6 4.5305 -7.5560 -1.2723 13 6 3.8852 -8.6918 -2.0235 14 1 2.9798 -8.5213 -2.5870 15 6 4.4502 -9.9491 -1.9906 16 7 5.5525 -10.1571 -1.3041 17 14 3.6507 -11.3571 -2.9224 18 1 4.2031 -11.4162 -4.2995 19 1 3.9300 -12.6362 -2.2216 20 1 2.1834 -11.1380 -2.9867 21 6 2.1967 -1.1962 -0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6560 2.1325 0.0005 26 1 4.1168 2.1398 -0.0010 27 1 5.3561 0.0133 -0.0114 28 1 5.1384 -2.4735 0.4579 29 1 5.4884 -4.7237 -0.9396 30 1 4.5173 -5.1242 0.4973 31 1 5.5418 -7.3996 -1.6478 32 1 4.5707 -7.7994 -0.2106 33 1 5.9501 -11.0415 -1.2812 34 1 1.6567 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058256295.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:45 Heat of formation + Delta-G solvation = -40.342088 kcal Electronic energy + Delta-G solvation = -16485.428136 eV Core-core repulsion = 13701.206347 eV Total energy + Delta-G solvation = -2784.221789 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.59210 -39.58125 -36.08904 -35.29316 -33.36728 -32.01030 -30.66758 -29.69323 -27.84426 -25.26792 -24.00758 -22.44047 -21.58843 -18.88250 -18.33191 -18.13645 -17.32651 -16.97220 -16.77523 -16.25632 -15.86078 -15.21207 -14.76889 -14.72303 -14.53630 -14.48185 -14.17892 -14.03174 -13.64981 -13.21353 -13.03734 -12.74143 -12.59737 -12.49502 -12.11687 -12.06365 -11.61573 -11.39278 -11.03044 -10.74849 -10.66965 -9.66597 -9.11646 -8.51082 -8.34480 -6.46699 0.26756 0.44845 0.70315 1.40215 1.41005 1.44585 1.53522 1.93805 2.03698 2.36800 2.84928 3.00550 3.56268 3.94841 4.01714 4.04487 4.24142 4.25158 4.41822 4.45579 4.61781 4.78112 4.83613 4.93490 4.94977 4.95299 5.23300 5.35118 5.39335 5.54374 5.56712 5.70317 5.88833 6.10402 6.29349 6.60020 6.99515 7.21114 8.77555 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.047541 B = 0.003247 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.827757 B = 8620.284986 C = 9088.377555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.096 4.096 5 C -0.152 4.152 6 C 0.133 3.867 7 N -0.657 5.657 8 C 0.534 3.466 9 O -0.538 6.538 10 C -0.115 4.115 11 S -0.271 6.271 12 C 0.085 3.915 13 C -0.539 4.539 14 H 0.058 0.942 15 C 0.018 3.982 16 N -0.922 5.922 17 Si 0.974 3.026 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.268 1.268 21 C -0.152 4.152 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.148 0.852 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.429 0.571 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.271 0.729 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.239 22.989 6.287 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.158 4.158 4 C -0.114 4.114 5 C -0.172 4.172 6 C 0.039 3.961 7 N -0.304 5.304 8 C 0.321 3.679 9 O -0.414 6.414 10 C -0.266 4.266 11 S -0.046 6.046 12 C -0.063 4.063 13 C -0.577 4.577 14 H 0.076 0.924 15 C -0.183 4.183 16 N -0.561 5.561 17 Si 0.797 3.203 18 H -0.194 1.194 19 H -0.198 1.198 20 H -0.193 1.193 21 C -0.172 4.172 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.166 0.834 26 H 0.176 0.824 27 H 0.168 0.832 28 H 0.269 0.731 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.731 23.010 5.309 23.772 hybrid contribution 1.329 -1.435 0.518 2.023 sum -1.402 21.575 5.827 22.392 Atomic orbital electron populations 1.20830 0.89973 1.03461 1.02778 1.20097 0.97289 0.92578 0.98255 1.21365 0.94869 0.97692 1.01908 1.21347 0.94155 0.98311 0.97579 1.21196 1.01196 0.90411 1.04391 1.17979 0.91385 0.85817 1.00955 1.43274 1.25235 1.08326 1.53592 1.20084 0.84430 0.85338 0.78068 1.90741 1.25731 1.84778 1.40133 1.23360 1.03783 0.93385 1.06028 1.87292 1.42291 1.06841 1.68134 1.20843 0.95740 0.90782 0.98898 1.20951 1.11107 0.93794 1.31880 0.92412 1.25844 0.95350 1.01054 0.96056 1.70032 1.20444 1.24023 1.41606 0.85312 0.78858 0.77529 0.78581 1.19400 1.19790 1.19291 1.21074 0.93458 0.98711 1.04001 0.91002 0.92265 0.89158 0.83405 0.82394 0.83157 0.73117 0.85134 0.85266 0.95961 0.96004 0.91986 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 10.01 71.23 0.71 -1.35 16 2 C -0.08 -1.82 5.88 -19.88 -0.12 -1.94 16 3 C -0.14 -2.38 9.70 22.29 0.22 -2.16 16 4 C -0.10 -1.45 10.04 22.25 0.22 -1.23 16 5 C -0.15 -2.69 9.96 22.39 0.22 -2.47 16 6 C 0.13 3.22 6.28 38.15 0.24 3.46 16 7 N -0.66 -15.05 5.34 -303.51 -1.62 -16.68 16 8 C 0.53 16.87 7.59 87.66 0.67 17.53 16 9 O -0.54 -21.87 13.55 -3.05 -0.04 -21.91 16 10 C -0.11 -3.63 6.43 71.24 0.46 -3.17 16 11 S -0.27 -12.43 20.79 -56.49 -1.17 -13.60 16 12 C 0.08 4.48 5.70 71.23 0.41 4.88 16 13 C -0.54 -31.18 9.13 25.60 0.23 -30.95 16 14 H 0.06 3.39 7.71 -2.91 -0.02 3.37 16 15 C 0.02 1.02 5.46 84.65 0.46 1.48 16 16 N -0.92 -53.65 13.29 21.45 0.28 -53.37 16 17 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 C -0.15 -4.25 8.31 22.39 0.19 -4.06 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 24 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 25 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 26 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 27 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 28 H 0.43 6.24 8.82 -92.71 -0.82 5.42 16 29 H 0.13 3.48 8.14 -2.39 -0.02 3.46 16 30 H 0.13 3.50 8.14 -2.39 -0.02 3.48 16 31 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.11 3.54 6.42 -2.91 -0.02 3.52 16 Total: -1.00 -72.75 310.61 3.67 -69.08 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.29 Total: 10.38 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 3.91 Total: -19.97 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -1.34 Total: -70.05 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.04 Total: -21.91 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -12.43 SS G_CDS: -1.17 Total: -13.60 kcal Total: -72.75 3.67 -69.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256295.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.737 kcal (2) G-P(sol) polarization free energy of solvation -72.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds