Wall clock time and date at job start Mon Mar 30 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33859 * 124.49258 * 2 1 4 4 C 1.37436 * 115.12869 * 179.71191 * 3 2 1 5 5 C 1.37045 * 113.21733 * 0.44990 * 4 3 2 6 6 C 1.41585 * 125.47119 * 179.84129 * 5 4 3 7 7 C 1.35651 * 120.00122 * 179.71760 * 6 5 4 8 8 C 1.41475 * 120.00061 * 180.02562 * 7 6 5 9 9 O 1.21785 * 120.00052 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99941 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99873 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47233 * 324.99590 * 11 10 8 13 13 C 1.52998 * 109.47262 * 84.99703 * 11 10 8 14 14 C 1.50703 * 109.46762 * 204.99789 * 11 10 8 15 15 H 1.07998 * 120.00434 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99838 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99766 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99954 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47247 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47093 * 120.00255 * 18 16 14 21 21 H 1.48502 * 109.47322 * 240.00203 * 18 16 14 22 22 S 1.70607 * 124.49203 * 179.97438 * 2 1 3 23 23 H 1.09006 * 109.47274 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47591 * 300.01927 * 1 2 3 25 25 H 1.09005 * 109.47295 * 60.02231 * 1 2 3 26 26 H 1.08001 * 122.43468 * 359.97438 * 3 2 1 27 27 H 1.07996 * 123.38775 * 180.29382 * 4 3 2 28 28 H 1.08009 * 120.00131 * 359.43934 * 6 5 4 29 29 H 1.07999 * 119.99921 * 359.97438 * 7 6 5 30 30 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.47121 * 179.97438 * 13 11 10 32 32 H 1.09001 * 109.47093 * 299.99767 * 13 11 10 33 33 H 1.09002 * 109.46901 * 60.00083 * 13 11 10 34 34 H 0.97005 * 119.99620 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1033 0.0000 4 6 3.6211 0.8797 0.0063 5 6 3.9492 -0.4509 0.0015 6 6 5.2655 -0.9725 0.0029 7 6 5.4633 -2.3145 0.0035 8 6 6.7786 -2.8357 0.0055 9 8 7.7332 -2.0795 0.0061 10 7 6.9751 -4.1690 0.0056 11 6 8.3371 -4.7087 0.0082 12 1 8.9861 -4.0599 -0.5799 13 6 8.8548 -4.7800 1.4461 14 6 8.3308 -6.0908 -0.5926 15 1 7.4050 -6.5241 -0.9410 16 6 9.5072 -6.8023 -0.6974 17 7 10.6347 -6.2749 -0.2726 18 14 9.4994 -8.5157 -1.4413 19 1 8.1147 -8.8768 -1.8381 20 1 10.3789 -8.5399 -2.6377 21 1 9.9985 -9.4924 -0.4402 22 16 2.4731 -1.4061 0.0006 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5141 0.8898 25 1 -0.3634 0.5135 -0.8902 26 1 1.8418 2.0969 -0.0004 27 1 4.3541 1.6727 0.0117 28 1 6.1122 -0.3019 -0.0011 29 1 4.6167 -2.9851 0.0034 30 1 6.2147 -4.7713 0.0047 31 1 9.8680 -5.1819 1.4481 32 1 8.8593 -3.7803 1.8806 33 1 8.2057 -5.4289 2.0342 34 1 11.4623 -6.7756 -0.3460 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:33 Heat of formation + Delta-G solvation = -1.740381 kcal Electronic energy + Delta-G solvation = -16625.050746 eV Core-core repulsion = 13842.502853 eV Total energy + Delta-G solvation = -2782.547893 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.11760 -38.22176 -35.01974 -34.10184 -32.35602 -31.25564 -29.06201 -26.78360 -25.22824 -23.80538 -22.59228 -20.40584 -19.49347 -19.18117 -17.22158 -16.64654 -15.99152 -15.20536 -15.13786 -14.38698 -14.31237 -14.01016 -13.66446 -13.24004 -13.04774 -12.66438 -12.43687 -12.33463 -12.18804 -11.71843 -11.66958 -11.06689 -10.95964 -10.84205 -10.72372 -10.29687 -10.21783 -10.13555 -9.11730 -9.00559 -8.70833 -8.53187 -8.07637 -7.74411 -6.10183 -4.19204 0.18635 1.40543 1.83340 1.83919 2.77318 3.25163 3.32801 3.35785 4.08518 4.22275 4.44669 4.58769 4.92112 5.02097 5.19362 5.21991 5.22215 5.27379 5.37709 5.60861 5.75096 5.84294 6.07233 6.18491 6.46026 6.46633 6.87110 7.00677 7.18923 7.49912 7.60728 7.73231 7.95286 8.17842 8.70467 8.81062 9.16590 9.48397 10.95945 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.039407 B = 0.003449 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.356491 B = 8115.611928 C = 8617.866899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.220 4.220 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.183 4.183 6 C -0.008 4.008 7 C -0.197 4.197 8 C 0.532 3.468 9 O -0.562 6.562 10 N -0.703 5.703 11 C 0.262 3.738 12 H 0.050 0.950 13 C -0.146 4.146 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.902 3.098 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 S 0.192 5.808 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.137 0.863 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.117 0.883 30 H 0.389 0.611 31 H 0.090 0.910 32 H 0.015 0.985 33 H 0.026 0.974 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.163 11.017 1.160 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.339 4.339 3 C -0.178 4.178 4 C -0.138 4.138 5 C -0.300 4.300 6 C -0.030 4.030 7 C -0.220 4.220 8 C 0.320 3.680 9 O -0.444 6.444 10 N -0.349 5.349 11 C 0.160 3.840 12 H 0.067 0.933 13 C -0.205 4.205 14 C -0.571 4.571 15 H 0.080 0.920 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 S 0.460 5.540 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.155 0.845 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.135 0.865 30 H 0.221 0.779 31 H 0.109 0.891 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.611 9.919 1.174 21.122 hybrid contribution -0.051 0.330 -0.362 0.492 sum -18.662 10.248 0.812 21.306 Atomic orbital electron populations 1.20325 0.87844 1.02885 1.02950 1.24161 1.01335 0.98204 1.10238 1.19854 0.92940 0.99242 1.05807 1.20883 0.96268 0.95203 1.01491 1.22661 0.97112 0.96855 1.13387 1.20664 0.93483 0.95778 0.93085 1.22289 0.97908 0.95858 1.05950 1.16912 0.88918 0.83616 0.78524 1.90786 1.43717 1.58144 1.51789 1.46505 1.11657 1.05445 1.71309 1.18756 0.77415 0.93789 0.94011 0.93261 1.22072 1.03745 0.97360 0.97342 1.21273 0.94549 1.00096 1.41228 0.92014 1.24899 0.95274 0.98410 0.95202 1.69921 0.98651 1.37595 1.45951 0.86390 0.78147 0.83684 0.78850 1.19729 1.20883 1.20882 1.83134 0.94781 1.07544 1.68502 0.91476 0.90621 0.90612 0.84522 0.83575 0.83638 0.86495 0.77861 0.89142 0.96598 0.95491 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.33 36.01 0.37 -0.17 16 2 C -0.22 -2.09 6.28 -35.85 -0.23 -2.31 16 3 C -0.15 -1.42 9.99 -41.41 -0.41 -1.83 16 4 C -0.11 -1.16 10.25 -40.31 -0.41 -1.58 16 5 C -0.18 -2.27 6.21 -38.74 -0.24 -2.51 16 6 C -0.01 -0.12 9.37 -39.23 -0.37 -0.49 16 7 C -0.20 -3.16 9.30 -39.27 -0.37 -3.53 16 8 C 0.53 11.16 7.52 -15.03 -0.11 11.05 16 9 O -0.56 -13.90 15.77 5.11 0.08 -13.82 16 10 N -0.70 -15.25 5.06 -57.87 -0.29 -15.54 16 11 C 0.26 6.86 2.56 -69.08 -0.18 6.68 16 12 H 0.05 1.48 7.57 -51.93 -0.39 1.09 16 13 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 14 C -0.53 -14.39 8.73 -34.44 -0.30 -14.69 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -25.22 11.32 55.43 0.63 -24.60 16 18 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 S 0.19 2.04 21.69 -107.50 -2.33 -0.29 16 23 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 27 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.15 2.20 7.46 -52.48 -0.39 1.81 16 29 H 0.12 1.59 7.04 -52.49 -0.37 1.22 16 30 H 0.39 7.28 8.50 -40.82 -0.35 6.93 16 31 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -31.44 309.27 -8.59 -40.03 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.31 Total: 4.83 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.99 Total: -11.09 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.33 Total: -40.14 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.33 Total: -0.29 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.44 -8.59 -40.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.288 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds