Wall clock time and date at job start Mon Mar 30 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33859 * 124.49258 * 2 1 4 4 C 1.37436 * 115.12869 * 179.71191 * 3 2 1 5 5 C 1.37045 * 113.21733 * 0.44990 * 4 3 2 6 6 C 1.41585 * 125.47119 * 179.84129 * 5 4 3 7 7 C 1.35651 * 120.00122 * 179.71760 * 6 5 4 8 8 C 1.41475 * 120.00061 * 180.02562 * 7 6 5 9 9 O 1.21785 * 120.00052 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99941 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99873 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47233 * 324.99590 * 11 10 8 13 13 C 1.52998 * 109.47262 * 84.99703 * 11 10 8 14 14 C 1.50703 * 109.46762 * 204.99789 * 11 10 8 15 15 H 1.07998 * 120.00434 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99838 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99766 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99954 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47247 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47093 * 120.00255 * 18 16 14 21 21 H 1.48502 * 109.47322 * 240.00203 * 18 16 14 22 22 S 1.70607 * 124.49203 * 179.97438 * 2 1 3 23 23 H 1.09006 * 109.47274 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47591 * 300.01927 * 1 2 3 25 25 H 1.09005 * 109.47295 * 60.02231 * 1 2 3 26 26 H 1.08001 * 122.43468 * 359.97438 * 3 2 1 27 27 H 1.07996 * 123.38775 * 180.29382 * 4 3 2 28 28 H 1.08009 * 120.00131 * 359.43934 * 6 5 4 29 29 H 1.07999 * 119.99921 * 359.97438 * 7 6 5 30 30 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.47121 * 179.97438 * 13 11 10 32 32 H 1.09001 * 109.47093 * 299.99767 * 13 11 10 33 33 H 1.09002 * 109.46901 * 60.00083 * 13 11 10 34 34 H 0.97005 * 119.99620 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1033 0.0000 4 6 3.6211 0.8797 0.0063 5 6 3.9492 -0.4509 0.0015 6 6 5.2655 -0.9725 0.0029 7 6 5.4633 -2.3145 0.0035 8 6 6.7786 -2.8357 0.0055 9 8 7.7332 -2.0795 0.0061 10 7 6.9751 -4.1690 0.0056 11 6 8.3371 -4.7087 0.0082 12 1 8.9861 -4.0599 -0.5799 13 6 8.8548 -4.7800 1.4461 14 6 8.3308 -6.0908 -0.5926 15 1 7.4050 -6.5241 -0.9410 16 6 9.5072 -6.8023 -0.6974 17 7 10.6347 -6.2749 -0.2726 18 14 9.4994 -8.5157 -1.4413 19 1 8.1147 -8.8768 -1.8381 20 1 10.3789 -8.5399 -2.6377 21 1 9.9985 -9.4924 -0.4402 22 16 2.4731 -1.4061 0.0006 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5141 0.8898 25 1 -0.3634 0.5135 -0.8902 26 1 1.8418 2.0969 -0.0004 27 1 4.3541 1.6727 0.0117 28 1 6.1122 -0.3019 -0.0011 29 1 4.6167 -2.9851 0.0034 30 1 6.2147 -4.7713 0.0047 31 1 9.8680 -5.1819 1.4481 32 1 8.8593 -3.7803 1.8806 33 1 8.2057 -5.4289 2.0342 34 1 11.4623 -6.7756 -0.3460 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:33 Heat of formation + Delta-G solvation = -21.160676 kcal Electronic energy + Delta-G solvation = -16625.892873 eV Core-core repulsion = 13842.502853 eV Total energy + Delta-G solvation = -2783.390020 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76137 -39.10114 -36.84573 -35.31293 -34.32242 -32.22262 -30.85561 -27.85667 -27.33480 -24.76912 -23.81571 -22.12729 -20.93550 -20.32341 -18.82613 -17.75417 -17.56741 -16.98051 -16.24271 -16.03362 -15.77413 -15.00298 -14.93015 -14.49678 -14.34719 -13.88750 -13.76404 -13.44909 -13.37165 -13.05556 -12.95235 -12.88486 -12.73151 -12.47282 -12.29017 -12.11988 -11.68024 -11.19685 -11.09886 -10.87619 -10.60477 -9.78855 -9.52020 -8.90655 -8.18040 -6.35816 -0.81733 0.57072 0.80791 1.01986 1.44521 1.45036 1.57807 1.83188 2.37092 2.56712 2.76296 3.12381 3.89479 3.94910 4.08107 4.30861 4.38031 4.48171 4.71144 4.74434 4.75790 4.91351 4.96624 5.08227 5.10440 5.16993 5.24046 5.35418 5.46046 5.55074 5.61045 5.69588 5.92178 6.09136 6.72063 6.96712 7.31594 7.54827 8.88843 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.039407 B = 0.003449 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.356491 B = 8115.611928 C = 8617.866899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.202 4.202 3 C -0.164 4.164 4 C -0.085 4.085 5 C -0.234 4.234 6 C 0.031 3.969 7 C -0.233 4.233 8 C 0.533 3.467 9 O -0.612 6.612 10 N -0.702 5.702 11 C 0.268 3.732 12 H -0.002 1.002 13 C -0.133 4.133 14 C -0.548 4.548 15 H 0.073 0.927 16 C 0.013 3.987 17 N -0.918 5.918 18 Si 0.976 3.024 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.277 1.277 22 S 0.198 5.802 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.164 0.836 27 H 0.161 0.839 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.405 0.595 31 H 0.068 0.932 32 H 0.011 0.989 33 H 0.040 0.960 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.480 11.245 0.919 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.322 4.322 3 C -0.194 4.194 4 C -0.117 4.117 5 C -0.351 4.351 6 C 0.010 3.990 7 C -0.256 4.256 8 C 0.325 3.675 9 O -0.498 6.498 10 N -0.350 5.350 11 C 0.165 3.835 12 H 0.016 0.984 13 C -0.192 4.192 14 C -0.586 4.586 15 H 0.091 0.909 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.800 3.200 19 H -0.183 1.183 20 H -0.209 1.209 21 H -0.203 1.203 22 S 0.467 5.533 23 H 0.092 0.908 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.181 0.819 27 H 0.178 0.822 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.240 0.760 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.971 10.130 0.937 24.212 hybrid contribution 0.786 0.519 -0.282 0.983 sum -21.185 10.649 0.655 23.720 Atomic orbital electron populations 1.20506 0.85521 1.03930 1.04445 1.24707 1.02908 0.97521 1.07029 1.20144 0.92299 1.00641 1.06285 1.21264 0.97487 0.94888 0.98061 1.22575 0.96756 0.98048 1.17672 1.20691 0.94511 0.95020 0.88816 1.21917 0.95742 0.96741 1.11210 1.17556 0.90325 0.82827 0.76794 1.90748 1.45761 1.59028 1.54269 1.46240 1.10451 1.06259 1.72007 1.18365 0.78932 0.92900 0.93323 0.98388 1.21897 1.02721 0.97163 0.97424 1.21588 0.95240 1.00320 1.41448 0.90853 1.25846 0.94765 1.02654 0.95466 1.70070 0.99357 1.39332 1.46899 0.85245 0.78637 0.78352 0.77775 1.18330 1.20889 1.20283 1.83131 0.94028 1.08025 1.68124 0.90768 0.88995 0.89019 0.81895 0.82155 0.84892 0.84016 0.76016 0.91338 0.96991 0.94047 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 10.33 71.24 0.74 -0.04 16 2 C -0.20 -3.12 6.28 24.69 0.15 -2.97 16 3 C -0.16 -2.56 9.99 21.08 0.21 -2.35 16 4 C -0.09 -1.63 10.25 21.80 0.22 -1.40 16 5 C -0.23 -5.48 6.21 22.82 0.14 -5.33 16 6 C 0.03 0.92 9.37 22.50 0.21 1.13 16 7 C -0.23 -7.61 9.30 22.47 0.21 -7.40 16 8 C 0.53 23.29 7.52 85.04 0.64 23.93 16 9 O -0.61 -32.04 15.77 -4.62 -0.07 -32.11 16 10 N -0.70 -31.39 5.06 -455.18 -2.30 -33.69 16 11 C 0.27 14.62 2.56 44.24 0.11 14.73 16 12 H 0.00 -0.11 7.57 -2.39 -0.02 -0.13 16 13 C -0.13 -7.06 9.26 71.98 0.67 -6.40 16 14 C -0.55 -29.96 8.73 25.60 0.22 -29.74 16 15 H 0.07 3.75 7.74 -2.91 -0.02 3.72 16 16 C 0.01 0.69 5.30 84.65 0.45 1.14 16 17 N -0.92 -53.82 11.32 21.45 0.24 -53.58 16 18 Si 0.98 42.72 29.54 68.60 2.03 44.75 16 19 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 S 0.20 3.78 21.69 -56.49 -1.23 2.56 16 23 H 0.07 0.60 8.11 -2.38 -0.02 0.58 16 24 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 27 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 28 H 0.13 4.14 7.46 -2.91 -0.02 4.12 16 29 H 0.14 3.78 7.04 -2.91 -0.02 3.76 16 30 H 0.40 15.25 8.50 -92.71 -0.79 14.47 16 31 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 33 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 Total: -1.00 -70.30 309.27 2.97 -67.34 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.32 Total: 19.44 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.98 Total: -14.71 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -2.06 Total: -87.27 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.07 Total: -32.11 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.23 Total: 2.56 kcal Total: -70.30 2.97 -67.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.175 kcal (2) G-P(sol) polarization free energy of solvation -70.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds