Wall clock time and date at job start Mon Mar 30 2020 06:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30426 * 125.44335 * 2 1 4 4 C 1.34005 * 108.96215 * 179.75353 * 3 2 1 5 5 C 1.50701 * 126.26122 * 180.27148 * 4 3 2 6 6 C 1.36268 * 107.47496 * 0.42499 * 4 3 2 7 7 C 1.47066 * 126.62440 * 179.83778 * 6 4 3 8 8 C 1.35325 * 126.32588 * 144.98241 * 7 6 4 9 9 N 1.37427 * 107.73782 * 180.14858 * 8 7 6 10 10 C 1.37230 * 125.74386 * 179.87397 * 9 8 7 11 11 H 1.07999 * 120.00218 * 38.98534 * 10 9 8 12 12 C 1.38484 * 119.99326 * 218.98859 * 10 9 8 13 13 N 1.31642 * 120.00295 * 21.22957 * 12 10 9 14 14 Si 1.86803 * 119.99377 * 201.23240 * 12 10 9 15 15 H 1.48494 * 109.47115 * 265.47081 * 14 12 10 16 16 H 1.48499 * 109.47474 * 25.47545 * 14 12 10 17 17 H 1.48503 * 109.47001 * 145.47307 * 14 12 10 18 18 C 1.34640 * 108.50408 * 359.59936 * 9 8 7 19 19 S 1.71199 * 125.71397 * 180.20803 * 18 9 8 20 20 N 1.34728 * 108.57121 * 0.24717 * 18 9 8 21 21 H 0.97002 * 126.07951 * 179.97438 * 20 18 9 22 22 O 1.34047 * 125.43990 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.47184 * 269.98067 * 1 2 3 24 24 H 1.09003 * 109.47142 * 29.97490 * 1 2 3 25 25 H 1.08999 * 109.47770 * 149.97766 * 1 2 3 26 26 H 1.09004 * 109.46735 * 270.18512 * 5 4 3 27 27 H 1.09000 * 109.47210 * 30.18100 * 5 4 3 28 28 H 1.08994 * 109.47356 * 150.18807 * 5 4 3 29 29 H 1.07996 * 126.12610 * 0.02662 * 8 7 6 30 30 H 0.97004 * 119.99754 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2633 1.0626 0.0000 4 6 3.5483 0.6824 0.0055 5 6 4.7477 1.5947 0.0131 6 6 3.5720 -0.6801 -0.0007 7 6 4.7673 -1.5368 -0.0013 8 6 4.8970 -2.7324 0.6192 9 7 6.1666 -3.1968 0.3720 10 6 6.6909 -4.3794 0.8302 11 1 6.0755 -5.2663 0.8627 12 6 8.0091 -4.4353 1.2507 13 7 8.6325 -3.3332 1.6110 14 14 8.9027 -6.0748 1.3068 15 1 8.8029 -6.6465 2.6737 16 1 8.2838 -7.0095 0.3329 17 1 10.3319 -5.8718 0.9584 18 6 6.8072 -2.2991 -0.4003 19 16 8.4138 -2.4408 -0.9745 20 7 5.9724 -1.2703 -0.6449 21 1 6.1753 -0.4836 -1.1749 22 8 2.2842 -1.0921 -0.0005 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 5.0398 1.8194 -1.0127 27 1 4.4966 2.5207 0.5305 28 1 5.5742 1.1040 0.5270 29 1 4.1393 -3.2310 1.2054 30 1 9.5560 -3.3725 1.9052 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075987112.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:39 Heat of formation + Delta-G solvation = 51.443271 kcal Electronic energy + Delta-G solvation = -17449.998402 eV Core-core repulsion = 14566.216382 eV Total energy + Delta-G solvation = -2883.782020 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.40998 -43.06633 -36.77099 -36.24771 -34.16160 -33.65382 -31.35790 -30.27012 -28.21636 -26.93880 -24.03595 -23.15127 -22.62459 -21.88872 -20.59257 -18.86611 -17.97459 -17.59236 -17.09885 -16.51925 -16.23890 -16.03988 -15.61405 -15.23579 -14.64895 -14.38258 -14.01588 -13.87366 -13.67625 -13.47634 -13.32036 -13.00106 -12.87485 -12.24033 -12.10142 -12.00077 -11.80987 -11.66960 -11.03659 -10.75295 -9.48314 -8.79719 -8.30480 -7.64602 -6.61388 -0.15757 0.85021 1.03122 1.28955 1.41580 1.53726 1.58526 1.64245 1.67820 2.18242 2.49478 2.72792 2.98424 3.01727 3.56296 3.69286 4.11122 4.26417 4.43483 4.56351 4.58581 4.59884 4.68566 4.71715 4.86277 4.89680 5.08034 5.17201 5.34602 5.74126 5.94803 6.29792 6.59698 6.81519 7.01305 8.37346 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.033579 B = 0.005524 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.647807 B = 5067.257385 C = 5612.457266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.203 3.797 3 N -0.502 5.502 4 C 0.009 3.991 5 C -0.077 4.077 6 C 0.009 3.991 7 C 0.061 3.939 8 C -0.012 4.012 9 N -0.245 5.245 10 C -0.380 4.380 11 H 0.135 0.865 12 C 0.029 3.971 13 N -0.777 5.777 14 Si 0.999 3.001 15 H -0.253 1.253 16 H -0.257 1.257 17 H -0.290 1.290 18 C 0.376 3.624 19 S -0.753 6.753 20 N -0.541 5.541 21 H 0.438 0.562 22 O -0.196 6.196 23 H 0.115 0.885 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.209 0.791 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.152 4.968 0.833 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.002 4.002 3 N -0.232 5.232 4 C -0.113 4.113 5 C -0.134 4.134 6 C -0.045 4.045 7 C -0.055 4.055 8 C -0.149 4.149 9 N 0.087 4.913 10 C -0.508 4.508 11 H 0.153 0.847 12 C -0.191 4.191 13 N -0.402 5.402 14 Si 0.820 3.180 15 H -0.177 1.177 16 H -0.181 1.181 17 H -0.217 1.217 18 C 0.020 3.980 19 S -0.621 6.621 20 N -0.156 5.156 21 H 0.281 0.719 22 O -0.083 6.083 23 H 0.133 0.867 24 H 0.135 0.865 25 H 0.128 0.872 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.226 0.774 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.109 5.436 0.593 17.012 hybrid contribution 0.488 -0.673 0.048 0.833 sum -15.621 4.763 0.641 16.344 Atomic orbital electron populations 1.20651 0.77128 1.06871 1.06599 1.27524 0.98038 0.77426 0.97260 1.70258 1.01415 1.30866 1.20698 1.22119 0.94280 0.91183 1.03739 1.20262 0.91066 0.98116 1.03993 1.19266 0.81091 0.91794 1.12319 1.16854 0.85797 0.96317 1.06482 1.22979 0.91487 0.94550 1.05876 1.40698 1.08580 1.14827 1.27175 1.20058 0.98626 0.86096 1.46037 0.84737 1.26116 0.97033 1.02273 0.93632 1.70184 1.12588 1.30725 1.26692 0.84854 0.77037 0.76738 0.79363 1.17727 1.18071 1.21651 1.21497 0.94334 0.87398 0.94790 1.92127 1.05976 1.92386 1.71653 1.42621 1.09280 1.20042 1.43704 0.71897 1.84462 1.15302 1.38016 1.70565 0.86690 0.86493 0.87248 0.89048 0.88742 0.91633 0.77412 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 71.24 0.75 0.17 16 2 C 0.20 4.67 8.32 88.32 0.74 5.41 16 3 N -0.50 -13.80 11.26 -290.66 -3.27 -17.08 16 4 C 0.01 0.26 7.16 41.77 0.30 0.56 16 5 C -0.08 -1.95 9.61 71.24 0.68 -1.26 16 6 C 0.01 0.30 7.22 24.13 0.17 0.47 16 7 C 0.06 2.28 6.67 39.62 0.26 2.54 16 8 C -0.01 -0.48 11.34 83.14 0.94 0.46 16 9 N -0.24 -12.09 2.74 -353.20 -0.97 -13.06 16 10 C -0.38 -19.23 9.70 83.91 0.81 -18.42 16 11 H 0.14 6.09 7.91 -2.91 -0.02 6.06 16 12 C 0.03 1.53 4.24 84.78 0.36 1.89 16 13 N -0.78 -43.92 10.96 21.59 0.24 -43.69 16 14 Si 1.00 41.85 29.60 68.60 2.03 43.88 16 15 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 18 C 0.38 19.47 7.44 179.11 1.33 20.80 16 19 S -0.75 -45.10 27.49 -56.49 -1.55 -46.65 16 20 N -0.54 -22.44 5.72 -186.48 -1.07 -23.51 16 21 H 0.44 15.97 8.49 -92.71 -0.79 15.18 16 22 O -0.20 -5.52 10.80 -9.15 -0.10 -5.62 16 23 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 1.83 7.65 -2.39 -0.02 1.81 16 29 H 0.21 6.70 8.06 -2.91 -0.02 6.67 16 30 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -75.11 283.23 2.06 -73.05 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.40 Total: 20.04 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.35 Total: 12.63 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -5.07 Total: -97.33 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.10 Total: -5.62 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: -45.10 SS G_CDS: -1.55 Total: -46.65 kcal Total: -75.11 2.06 -73.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075987112.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.488 kcal (2) G-P(sol) polarization free energy of solvation -75.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds