Wall clock time and date at job start Mon Mar 30 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35880 * 117.00200 * 2 1 4 4 C 1.39572 * 120.02269 * 0.02562 * 3 2 1 5 5 C 1.35760 * 120.84424 * 179.97438 * 4 3 2 6 6 C 1.42050 * 120.62470 * 359.97438 * 5 4 3 7 7 N 1.32808 * 128.62139 * 179.97438 * 6 5 4 8 8 C 1.30541 * 118.01325 * 180.02562 * 7 6 5 9 9 C 1.40024 * 124.93475 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00115 * 185.84132 * 9 8 7 11 11 C 1.40303 * 119.99561 * 5.56343 * 9 8 7 12 12 N 1.30627 * 120.00633 * 354.22781 * 11 9 8 13 13 Si 1.86801 * 119.99870 * 174.22612 * 11 9 8 14 14 H 1.48505 * 109.47182 * 94.98542 * 13 11 9 15 15 H 1.48497 * 109.47272 * 214.98414 * 13 11 9 16 16 H 1.48499 * 109.47101 * 334.98636 * 13 11 9 17 17 S 1.75853 * 110.13373 * 0.26903 * 8 7 6 18 18 C 1.40713 * 118.31071 * 0.02562 * 6 5 4 19 19 C 1.38689 * 120.02499 * 180.02562 * 3 2 1 20 20 O 1.36077 * 120.01330 * 359.97438 * 19 3 2 21 21 C 1.42896 * 117.00419 * 270.02956 * 20 19 3 22 22 H 1.09005 * 109.46843 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46795 * 299.99716 * 1 2 3 24 24 H 1.08994 * 109.47587 * 59.99687 * 1 2 3 25 25 H 1.08002 * 119.57834 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.68773 * 180.02562 * 5 4 3 27 27 H 0.96994 * 120.00840 * 179.97438 * 12 11 9 28 28 H 1.08997 * 109.47570 * 59.99562 * 21 20 19 29 29 H 1.09003 * 109.47455 * 179.97438 * 21 20 19 30 30 H 1.09002 * 109.47222 * 299.99705 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2862 2.3816 0.0005 5 6 1.8852 3.5999 0.0011 6 6 3.3014 3.7100 0.0016 7 7 4.0475 4.8087 0.0017 8 6 5.3453 4.6685 0.0018 9 6 6.2658 5.7237 0.0024 10 1 7.3219 5.5191 -0.0928 11 6 5.8155 7.0472 0.1208 12 7 4.5348 7.3043 0.1170 13 14 7.0475 8.4419 0.2840 14 1 7.3138 9.0263 -1.0550 15 1 6.4942 9.4889 1.1799 16 1 8.3140 7.9191 0.8567 17 16 5.7699 2.9620 -0.0061 18 6 4.0627 2.5266 0.0011 19 6 3.4308 1.2838 -0.0005 20 8 4.1727 0.1430 -0.0005 21 6 4.5263 -0.4009 1.2726 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.2081 2.3176 0.0014 26 1 1.2792 4.4938 0.0019 27 1 4.2235 8.2193 0.1992 28 1 3.6206 -0.6406 1.8297 29 1 5.1151 -1.3071 1.1298 30 1 5.1128 0.3297 1.8297 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075987169.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:04 Heat of formation + Delta-G solvation = -47.933739 kcal Electronic energy + Delta-G solvation = -17406.144949 eV Core-core repulsion = 14485.760866 eV Total energy + Delta-G solvation = -2920.384082 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.30908 -39.38320 -38.89448 -36.60548 -34.92674 -31.32340 -30.80221 -28.65711 -27.85602 -27.29177 -24.42127 -23.19296 -22.09499 -19.63456 -19.26866 -18.34864 -17.52330 -17.10391 -16.88090 -16.60446 -16.05690 -15.85663 -15.51020 -14.91877 -14.81873 -14.35118 -13.83661 -13.70755 -13.20994 -13.10930 -12.83858 -12.74264 -12.57707 -12.32975 -12.00152 -11.63721 -11.56342 -11.04087 -10.97800 -10.55738 -9.71177 -9.28803 -8.66112 -8.56293 -6.76013 0.06054 0.25031 0.91864 1.35693 1.39924 1.44287 1.61087 1.87497 2.16220 2.56874 2.65562 2.93136 3.32184 3.78225 4.14628 4.24583 4.40730 4.42166 4.46268 4.49351 4.53227 4.62638 4.76877 4.83761 4.90872 5.18359 5.29229 5.50083 5.57470 5.92576 6.13736 6.27689 6.46018 6.75821 7.83603 8.14270 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.033725 B = 0.005864 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.051874 B = 4773.355557 C = 5513.889652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.039 3.961 4 C -0.136 4.136 5 C -0.116 4.116 6 C 0.129 3.871 7 N -0.578 5.578 8 C 0.222 3.778 9 C -0.391 4.391 10 H 0.114 0.886 11 C 0.024 3.976 12 N -0.732 5.732 13 Si 1.009 2.991 14 H -0.256 1.256 15 H -0.262 1.262 16 H -0.247 1.247 17 S -0.103 6.103 18 C -0.252 4.252 19 C 0.114 3.886 20 O -0.346 6.346 21 C 0.037 3.963 22 H 0.120 0.880 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.169 0.831 26 H 0.132 0.868 27 H 0.296 0.704 28 H 0.051 0.949 29 H 0.118 0.882 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.216 -5.543 2.177 7.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C -0.009 4.009 4 C -0.157 4.157 5 C -0.138 4.138 6 C -0.001 4.001 7 N -0.299 5.299 8 C -0.030 4.030 9 C -0.432 4.432 10 H 0.132 0.868 11 C -0.204 4.204 12 N -0.353 5.353 13 Si 0.826 3.174 14 H -0.180 1.180 15 H -0.187 1.187 16 H -0.170 1.170 17 S 0.152 5.848 18 C -0.373 4.373 19 C 0.064 3.936 20 O -0.263 6.263 21 C -0.057 4.057 22 H 0.138 0.862 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.186 0.814 26 H 0.150 0.850 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.428 -5.727 2.026 6.975 hybrid contribution -0.692 0.650 0.218 0.974 sum -4.120 -5.077 2.244 6.912 Atomic orbital electron populations 1.23319 0.76860 1.05330 1.02066 1.86004 1.22969 1.25314 1.89924 1.18725 0.89941 0.85668 1.06553 1.20764 1.00920 0.89923 1.04130 1.20314 0.90188 0.98330 1.04996 1.19998 0.96049 0.86426 0.97637 1.66861 1.03046 1.25901 1.34138 1.24195 0.91730 0.91524 0.95512 1.19783 0.94841 0.89894 1.38664 0.86783 1.27291 0.98329 1.02214 0.92531 1.70043 1.17213 1.23615 1.24477 0.84790 0.77693 0.75106 0.79819 1.18019 1.18659 1.16974 1.84105 1.05841 1.10853 1.83986 1.23596 0.95966 0.97341 1.20444 1.16953 0.87119 0.83462 1.06057 1.85978 1.71060 1.38519 1.30740 1.23057 0.99994 0.98657 0.83975 0.86175 0.91859 0.92050 0.81412 0.85032 0.89269 0.93051 0.86410 0.95045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.51 16 2 O -0.33 -11.01 10.26 -77.97 -0.80 -11.81 16 3 C 0.04 1.55 6.71 22.70 0.15 1.71 16 4 C -0.14 -4.95 8.94 22.02 0.20 -4.75 16 5 C -0.12 -5.09 10.07 22.64 0.23 -4.86 16 6 C 0.13 6.82 6.94 40.55 0.28 7.10 16 7 N -0.58 -33.22 8.60 -186.38 -1.60 -34.83 16 8 C 0.22 12.32 7.03 85.32 0.60 12.92 16 9 C -0.39 -19.87 9.38 23.21 0.22 -19.65 16 10 H 0.11 5.23 7.86 -2.91 -0.02 5.21 16 11 C 0.02 1.13 5.49 85.37 0.47 1.60 16 12 N -0.73 -37.10 11.86 21.89 0.26 -36.84 16 13 Si 1.01 33.75 29.57 68.60 2.03 35.77 16 14 H -0.26 -8.19 7.11 99.48 0.71 -7.49 16 15 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 16 H -0.25 -7.83 7.11 99.48 0.71 -7.13 16 17 S -0.10 -5.21 23.33 -56.49 -1.32 -6.53 16 18 C -0.25 -12.91 6.48 23.16 0.15 -12.76 16 19 C 0.11 5.21 5.75 22.66 0.13 5.34 16 20 O -0.35 -14.84 10.19 -80.20 -0.82 -15.66 16 21 C 0.04 1.24 11.13 113.37 1.26 2.51 16 22 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 23 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 24 H 0.06 1.18 7.66 -2.39 -0.02 1.16 16 25 H 0.17 4.44 6.27 -2.91 -0.02 4.42 16 26 H 0.13 5.35 8.06 -2.91 -0.02 5.33 16 27 H 0.30 13.17 8.29 -92.71 -0.77 12.40 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.06 281.23 3.72 -64.34 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.17 Total: 14.90 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 4.80 Total: -9.35 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.34 Total: -71.67 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.62 Total: -27.47 kcal Atomic # 14 Polarization: 33.75 SS G_CDS: 2.03 Total: 35.77 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -1.32 Total: -6.53 kcal Total: -68.06 3.72 -64.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075987169.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.404 kcal (2) G-P(sol) polarization free energy of solvation -68.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds