Wall clock time and date at job start Mon Mar 30 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.38878 * 126.30478 * 2 1 4 4 H 0.97003 * 126.29055 * 0.02562 * 3 2 1 5 5 C 1.34819 * 107.41599 * 180.22938 * 3 2 1 6 6 O 1.21676 * 125.89109 * 179.78344 * 5 3 2 7 7 O 1.34222 * 108.22786 * 359.78531 * 5 3 2 8 8 C 1.34048 * 126.30108 * 179.85443 * 2 1 3 9 9 C 1.48032 * 125.89408 * 0.02726 * 8 2 1 10 10 C 1.39457 * 122.79386 * 304.01761 * 9 8 2 11 11 C 1.33051 * 114.91084 * 180.28475 * 10 9 8 12 12 S 1.75803 * 109.95569 * 359.76035 * 11 10 9 13 13 C 1.34673 * 122.78730 * 123.83803 * 9 8 2 14 14 C 1.50702 * 125.22928 * 0.02562 * 13 9 8 15 15 C 1.50699 * 109.46982 * 95.18724 * 14 13 9 16 16 H 1.08004 * 120.00465 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00027 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00104 * 359.72938 * 17 15 14 19 19 Si 1.86802 * 119.99964 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46935 * 90.00732 * 19 17 15 21 21 H 1.48506 * 109.47054 * 210.00232 * 19 17 15 22 22 H 1.48493 * 109.47395 * 330.00572 * 19 17 15 23 23 H 1.09000 * 109.47179 * 271.45475 * 1 2 3 24 24 H 1.09004 * 109.47045 * 31.45977 * 1 2 3 25 25 H 1.08997 * 109.46978 * 151.45735 * 1 2 3 26 26 H 1.08000 * 122.54394 * 0.04189 * 10 9 8 27 27 H 1.08001 * 125.02054 * 179.75242 * 11 10 9 28 28 H 1.08996 * 109.47031 * 335.19033 * 14 13 9 29 29 H 1.08999 * 109.47329 * 215.18603 * 14 13 9 30 30 H 0.97000 * 120.00261 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3292 1.1192 0.0000 4 1 2.0391 2.0448 0.0003 5 6 3.6048 0.6827 -0.0051 6 8 4.5988 1.3845 -0.0104 7 8 3.5893 -0.6594 -0.0035 8 6 2.3006 -1.0803 0.0027 9 6 1.8479 -2.4897 0.0058 10 6 0.9921 -3.0061 0.9783 11 6 0.6911 -4.2940 0.8332 12 16 1.4944 -4.9412 -0.5904 13 6 2.2255 -3.3790 -0.9325 14 6 3.1398 -3.0826 -2.0933 15 6 4.5520 -3.4635 -1.7304 16 1 4.7662 -3.8783 -0.7564 17 6 5.5707 -3.2825 -2.6417 18 7 5.3092 -2.7823 -3.8295 19 14 7.3212 -3.7540 -2.1916 20 1 7.5666 -5.1681 -2.5729 21 1 8.2729 -2.8737 -2.9161 22 1 7.5160 -3.5951 -0.7281 23 1 -0.3633 0.0261 1.0273 24 1 -0.3633 0.8766 -0.5364 25 1 -0.3633 -0.9027 -0.4910 26 1 0.6063 -2.4072 1.7899 27 1 0.0485 -4.8584 1.4926 28 1 3.0988 -2.0184 -2.3255 29 1 2.8207 -3.6568 -2.9630 30 1 6.0259 -2.6546 -4.4705 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075987404.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:31 Heat of formation + Delta-G solvation = -10.241634 kcal Electronic energy + Delta-G solvation = -17680.798890 eV Core-core repulsion = 14762.049260 eV Total energy + Delta-G solvation = -2918.749630 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.73033 -37.91595 -36.86645 -35.39402 -33.34554 -31.26415 -30.64575 -27.88313 -25.91276 -23.71484 -22.90545 -21.91304 -21.15205 -18.99377 -17.17913 -16.85530 -16.47633 -16.23549 -15.69272 -14.92095 -14.86573 -14.37337 -13.47983 -13.20485 -13.03579 -12.89597 -12.66807 -12.32201 -12.04890 -12.03136 -11.69710 -11.12500 -11.03710 -10.71977 -10.61335 -10.53208 -10.22283 -9.84971 -9.54463 -8.42802 -8.36515 -7.99591 -7.46958 -6.05727 -4.09688 1.43434 2.03479 2.09004 2.53483 2.72982 2.91195 3.16976 3.34349 3.41313 3.47020 3.65831 4.46756 4.91974 4.98835 5.31023 5.39346 5.46580 5.51488 5.59215 5.82597 5.86436 6.01571 6.19029 6.38416 6.71099 6.79822 6.87038 7.34421 7.45278 7.67028 7.88277 8.19179 8.19645 8.91926 9.54804 11.04332 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.009678 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.370205 B = 2892.373469 C = 4394.463363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.010 4.010 3 N -0.646 5.646 4 H 0.433 0.567 5 C 0.612 3.388 6 O -0.512 6.512 7 O -0.208 6.208 8 C 0.084 3.916 9 C -0.104 4.104 10 C -0.098 4.098 11 C -0.251 4.251 12 S 0.109 5.891 13 C -0.060 4.060 14 C 0.075 3.925 15 C -0.509 4.509 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.892 5.892 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.271 1.271 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.134 0.866 27 H 0.159 0.841 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 2.065 8.077 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.111 4.111 3 N -0.302 5.302 4 H 0.274 0.726 5 C 0.367 3.633 6 O -0.398 6.398 7 O -0.110 6.110 8 C 0.031 3.969 9 C -0.115 4.115 10 C -0.129 4.129 11 C -0.386 4.386 12 S 0.373 5.627 13 C -0.179 4.179 14 C 0.037 3.963 15 C -0.547 4.547 16 H 0.078 0.922 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.724 3.276 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.196 1.196 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.152 0.848 27 H 0.177 0.823 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.840 0.777 7.240 14.761 hybrid contribution 0.879 1.746 0.866 2.138 sum -11.961 2.523 8.106 14.667 Atomic orbital electron populations 1.20225 0.85891 1.03993 1.02850 1.20713 0.94821 0.84660 1.10893 1.43902 1.06613 1.09628 1.70013 0.72569 1.18744 0.83931 0.80942 0.79693 1.91141 1.34761 1.55963 1.57952 1.85332 1.27688 1.20964 1.77018 1.18902 0.79454 0.92360 1.06166 1.16388 1.05825 0.89913 0.99390 1.19765 0.99227 0.94804 0.99058 1.25184 1.09979 0.98661 1.04761 1.84296 1.43515 1.12601 1.22260 1.25860 0.97441 0.93647 1.00981 1.18082 0.91682 0.98375 0.88204 1.20897 0.90518 1.42774 1.00558 0.92226 1.24939 0.99244 0.94833 0.94836 1.69928 1.32957 1.44387 1.05801 0.86498 0.83980 0.78167 0.78952 1.20547 1.21037 1.19561 0.90663 0.91099 0.89383 0.84834 0.82335 0.94078 0.94582 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 9.94 36.00 0.36 -0.34 16 2 C -0.01 -0.15 7.24 -80.87 -0.59 -0.74 16 3 N -0.65 -9.55 6.21 -12.45 -0.08 -9.63 16 4 H 0.43 4.66 8.96 -40.82 -0.37 4.30 16 5 C 0.61 12.50 9.53 54.07 0.52 13.01 16 6 O -0.51 -11.91 18.05 -19.02 -0.34 -12.26 16 7 O -0.21 -4.68 10.75 -21.98 -0.24 -4.91 16 8 C 0.08 1.56 5.87 -37.04 -0.22 1.35 16 9 C -0.10 -1.91 5.18 -106.69 -0.55 -2.47 16 10 C -0.10 -1.42 9.70 -40.93 -0.40 -1.82 16 11 C -0.25 -3.46 11.19 28.93 0.32 -3.13 16 12 S 0.11 1.83 23.31 -107.50 -2.51 -0.68 16 13 C -0.06 -1.25 5.73 -35.57 -0.20 -1.46 16 14 C 0.08 1.91 5.23 -29.03 -0.15 1.75 16 15 C -0.51 -14.30 9.09 -34.44 -0.31 -14.62 16 16 H 0.06 1.68 7.74 -52.48 -0.41 1.28 16 17 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 19 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.09 0.88 7.82 -51.93 -0.41 0.48 16 26 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.04 1.13 7.45 -51.93 -0.39 0.74 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 287.45 15.07 4.33 4.33 Total: -1.00 -33.46 287.45 -7.25 -40.71 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -2.81 Total: -2.33 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.32 Total: -6.72 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.66 Total: -35.53 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.58 Total: -17.17 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.51 Total: -0.68 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.46 -7.25 -40.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075987404.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.466 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds