Wall clock time and date at job start Mon Mar 30 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.38878 * 126.30478 * 2 1 4 4 H 0.97003 * 126.29055 * 0.02562 * 3 2 1 5 5 C 1.34819 * 107.41599 * 180.22938 * 3 2 1 6 6 O 1.21676 * 125.89109 * 179.78344 * 5 3 2 7 7 O 1.34222 * 108.22786 * 359.78531 * 5 3 2 8 8 C 1.34048 * 126.30108 * 179.85443 * 2 1 3 9 9 C 1.48032 * 125.89408 * 0.02726 * 8 2 1 10 10 C 1.39457 * 122.79386 * 304.01761 * 9 8 2 11 11 C 1.33051 * 114.91084 * 180.28475 * 10 9 8 12 12 S 1.75803 * 109.95569 * 359.76035 * 11 10 9 13 13 C 1.34673 * 122.78730 * 123.83803 * 9 8 2 14 14 C 1.50702 * 125.22928 * 0.02562 * 13 9 8 15 15 C 1.50699 * 109.46982 * 95.18724 * 14 13 9 16 16 H 1.08004 * 120.00465 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00027 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00104 * 359.72938 * 17 15 14 19 19 Si 1.86802 * 119.99964 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46935 * 90.00732 * 19 17 15 21 21 H 1.48506 * 109.47054 * 210.00232 * 19 17 15 22 22 H 1.48493 * 109.47395 * 330.00572 * 19 17 15 23 23 H 1.09000 * 109.47179 * 271.45475 * 1 2 3 24 24 H 1.09004 * 109.47045 * 31.45977 * 1 2 3 25 25 H 1.08997 * 109.46978 * 151.45735 * 1 2 3 26 26 H 1.08000 * 122.54394 * 0.04189 * 10 9 8 27 27 H 1.08001 * 125.02054 * 179.75242 * 11 10 9 28 28 H 1.08996 * 109.47031 * 335.19033 * 14 13 9 29 29 H 1.08999 * 109.47329 * 215.18603 * 14 13 9 30 30 H 0.97000 * 120.00261 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3292 1.1192 0.0000 4 1 2.0391 2.0448 0.0003 5 6 3.6048 0.6827 -0.0051 6 8 4.5988 1.3845 -0.0104 7 8 3.5893 -0.6594 -0.0035 8 6 2.3006 -1.0803 0.0027 9 6 1.8479 -2.4897 0.0058 10 6 0.9921 -3.0061 0.9783 11 6 0.6911 -4.2940 0.8332 12 16 1.4944 -4.9412 -0.5904 13 6 2.2255 -3.3790 -0.9325 14 6 3.1398 -3.0826 -2.0933 15 6 4.5520 -3.4635 -1.7304 16 1 4.7662 -3.8783 -0.7564 17 6 5.5707 -3.2825 -2.6417 18 7 5.3092 -2.7823 -3.8295 19 14 7.3212 -3.7540 -2.1916 20 1 7.5666 -5.1681 -2.5729 21 1 8.2729 -2.8737 -2.9161 22 1 7.5160 -3.5951 -0.7281 23 1 -0.3633 0.0261 1.0273 24 1 -0.3633 0.8766 -0.5364 25 1 -0.3633 -0.9027 -0.4910 26 1 0.6063 -2.4072 1.7899 27 1 0.0485 -4.8584 1.4926 28 1 3.0988 -2.0184 -2.3255 29 1 2.8207 -3.6568 -2.9630 30 1 6.0259 -2.6546 -4.4705 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075987404.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:31 Heat of formation + Delta-G solvation = -33.691062 kcal Electronic energy + Delta-G solvation = -17681.815733 eV Core-core repulsion = 14762.049260 eV Total energy + Delta-G solvation = -2919.766473 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.18747 -39.34169 -38.40639 -36.80131 -35.39478 -32.61982 -32.21636 -29.24615 -27.48468 -25.37198 -24.39403 -23.53290 -22.45754 -20.35163 -18.66043 -18.56783 -18.22329 -17.81608 -17.24253 -16.51954 -16.26349 -16.07017 -14.74238 -14.44654 -14.42206 -14.21857 -14.19246 -13.89483 -13.68905 -13.29332 -13.07664 -12.91155 -12.66802 -12.37224 -12.26307 -12.07691 -11.91740 -11.62728 -11.55551 -10.63629 -9.73742 -9.33691 -8.81689 -8.25041 -6.36385 0.06763 0.74765 0.81851 1.28588 1.29003 1.32088 1.35856 1.43550 1.45734 1.88760 2.30727 2.38707 3.07486 3.79837 3.85927 4.18306 4.24177 4.37946 4.69980 4.78696 4.84600 4.92784 5.05567 5.18944 5.22018 5.31470 5.49652 5.62872 5.65328 5.70884 6.07004 6.24515 6.71954 6.75705 7.31218 8.83721 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.009678 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.370205 B = 2892.373469 C = 4394.463363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.041 3.959 3 N -0.617 5.617 4 H 0.454 0.546 5 C 0.598 3.402 6 O -0.555 6.555 7 O -0.250 6.250 8 C 0.016 3.984 9 C -0.081 4.081 10 C -0.106 4.106 11 C -0.212 4.212 12 S 0.107 5.893 13 C -0.128 4.128 14 C 0.093 3.907 15 C -0.517 4.517 16 H 0.051 0.949 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.954 3.046 20 H -0.261 1.261 21 H -0.283 1.283 22 H -0.272 1.272 23 H 0.113 0.887 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.175 0.825 27 H 0.206 0.794 28 H 0.004 0.996 29 H 0.010 0.990 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.578 1.969 10.452 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 N -0.273 5.273 4 H 0.300 0.700 5 C 0.353 3.647 6 O -0.445 6.445 7 O -0.153 6.153 8 C -0.035 4.035 9 C -0.093 4.093 10 C -0.135 4.135 11 C -0.347 4.347 12 S 0.371 5.629 13 C -0.247 4.247 14 C 0.055 3.945 15 C -0.555 4.555 16 H 0.069 0.931 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.779 3.221 20 H -0.186 1.186 21 H -0.208 1.208 22 H -0.197 1.197 23 H 0.131 0.869 24 H 0.118 0.882 25 H 0.108 0.892 26 H 0.192 0.808 27 H 0.223 0.777 28 H 0.022 0.978 29 H 0.028 0.972 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.694 0.675 9.613 18.417 hybrid contribution 1.586 1.822 0.204 2.424 sum -14.108 2.496 9.817 17.368 Atomic orbital electron populations 1.20570 0.81325 1.05462 1.05722 1.21533 0.96702 0.82796 1.05045 1.43775 1.04789 1.11037 1.67691 0.70009 1.18946 0.85071 0.80435 0.80266 1.91079 1.36536 1.56787 1.60127 1.85225 1.30509 1.22119 1.77481 1.19423 0.78717 0.93988 1.11373 1.16785 1.04523 0.89354 0.98661 1.20019 0.98830 0.95482 0.99161 1.25727 1.08002 0.98308 1.02632 1.84171 1.43618 1.10658 1.24413 1.25344 1.00746 0.96993 1.01586 1.17524 0.91860 0.95464 0.89666 1.21213 0.92546 1.41884 0.99898 0.93110 1.25794 1.03288 0.95025 0.94877 1.70039 1.34060 1.45800 1.06768 0.85599 0.79364 0.78755 0.78390 1.18594 1.20808 1.19709 0.86863 0.88240 0.89226 0.80796 0.77711 0.97761 0.97158 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 9.94 71.23 0.71 -0.34 16 2 C 0.04 1.09 7.24 40.49 0.29 1.38 16 3 N -0.62 -17.31 6.21 -423.81 -2.63 -19.94 16 4 H 0.45 8.61 8.96 -92.71 -0.83 7.78 16 5 C 0.60 25.06 9.53 129.78 1.24 26.30 16 6 O -0.56 -26.94 18.05 18.90 0.34 -26.60 16 7 O -0.25 -11.76 10.75 8.33 0.09 -11.67 16 8 C 0.02 0.58 5.87 23.92 0.14 0.72 16 9 C -0.08 -2.89 5.18 -21.20 -0.11 -3.00 16 10 C -0.11 -2.65 9.70 21.40 0.21 -2.45 16 11 C -0.21 -4.89 11.19 66.66 0.75 -4.15 16 12 S 0.11 3.47 23.31 -56.49 -1.32 2.16 16 13 C -0.13 -5.44 5.73 24.87 0.14 -5.30 16 14 C 0.09 5.05 5.23 29.10 0.15 5.20 16 15 C -0.52 -30.61 9.09 25.60 0.23 -30.37 16 16 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 17 C 0.01 0.52 5.46 84.66 0.46 0.98 16 18 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 19 Si 0.95 47.43 29.54 68.60 2.03 49.46 16 20 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 23 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.09 1.38 7.82 -2.39 -0.02 1.37 16 26 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 27 H 0.21 2.88 8.06 -2.91 -0.02 2.85 16 28 H 0.00 0.25 7.45 -2.39 -0.02 0.24 16 29 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -80.56 287.45 3.36 -77.19 By element: Atomic # 1 Polarization: -2.19 SS G_CDS: 0.36 Total: -1.83 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 4.21 Total: -11.03 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -2.35 Total: -77.68 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: 0.43 Total: -38.27 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.32 Total: 2.16 kcal Total: -80.56 3.36 -77.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075987404.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.503 kcal (2) G-P(sol) polarization free energy of solvation -80.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds