Wall clock time and date at job start Mon Mar 30 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35724 * 116.99949 * 2 1 4 4 C 1.41436 * 126.77144 * 180.28734 * 3 2 1 5 5 C 1.36813 * 103.85794 * 180.16771 * 4 3 2 6 6 C 1.47690 * 126.87098 * 179.87270 * 5 4 3 7 7 C 1.39762 * 122.89692 * 309.90770 * 6 5 4 8 8 C 1.33079 * 113.73972 * 180.30906 * 7 6 5 9 9 S 1.75719 * 109.82060 * 359.73917 * 8 7 6 10 10 C 1.34705 * 122.88988 * 129.71683 * 6 5 4 11 11 C 1.50697 * 124.75213 * 359.97421 * 10 6 5 12 12 C 1.50700 * 109.47266 * 89.72261 * 11 10 6 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 O 1.34539 * 106.25832 * 359.61823 * 5 4 3 21 21 N 1.20891 * 111.58438 * 0.25758 * 20 5 4 22 22 H 1.08999 * 109.47515 * 59.99988 * 1 2 3 23 23 H 1.09004 * 109.47132 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47206 * 300.00099 * 1 2 3 25 25 H 1.08000 * 128.07050 * 0.07087 * 4 3 2 26 26 H 1.07997 * 123.12698 * 0.07806 * 7 6 5 27 27 H 1.08001 * 125.08953 * 179.77090 * 8 7 6 28 28 H 1.09004 * 109.47205 * 329.72354 * 11 10 6 29 29 H 1.08997 * 109.47395 * 209.72847 * 11 10 6 30 30 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4390 1.4494 -0.0057 5 6 3.5365 2.8140 0.0009 6 6 4.7781 3.6137 0.0015 7 6 5.8264 3.3873 0.8976 8 6 6.8542 4.2180 0.7407 9 16 6.5245 5.3314 -0.5781 10 6 4.9993 4.6218 -0.8642 11 6 4.0325 5.0651 -1.9317 12 6 3.1159 6.1222 -1.3718 13 1 3.2231 6.4414 -0.3456 14 6 2.1404 6.6818 -2.1696 15 7 2.0134 6.2970 -3.4208 16 14 1.0047 7.9926 -1.4757 17 1 1.6039 9.3334 -1.6955 18 1 -0.3111 7.9202 -2.1601 19 1 0.8186 7.7661 -0.0199 20 8 2.2750 3.2818 0.0009 21 7 1.4672 2.3824 0.0004 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.2396 0.7245 -0.0120 26 1 5.8029 2.6129 1.6500 27 1 7.7562 4.2088 1.3347 28 1 3.4420 4.2114 -2.2644 29 1 4.5865 5.4748 -2.7763 30 1 1.3269 6.6904 -3.9819 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075987405.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:18 Heat of formation + Delta-G solvation = 34.737877 kcal Electronic energy + Delta-G solvation = -17433.798791 eV Core-core repulsion = 14516.999619 eV Total energy + Delta-G solvation = -2916.799172 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.73947 -39.82692 -39.19977 -35.40084 -34.05808 -32.92992 -32.10973 -28.72785 -28.23315 -25.89038 -24.32960 -23.85493 -22.51380 -20.61971 -18.80337 -18.59766 -18.21638 -17.85996 -17.64898 -16.50846 -16.40287 -16.19913 -15.58150 -14.79295 -14.59980 -14.25930 -14.16131 -13.77508 -13.47651 -13.08692 -12.93312 -12.84342 -12.64615 -12.36123 -12.20535 -11.89751 -11.63778 -11.59533 -10.74216 -10.60597 -10.32363 -9.46982 -9.14911 -8.21679 -6.32807 -0.06838 0.55516 0.76512 1.19944 1.29536 1.37279 1.39615 1.50188 1.61175 1.93473 2.37060 2.43838 3.11806 3.26289 3.95950 4.02550 4.16973 4.21890 4.24753 4.36347 4.57974 4.60394 4.68642 4.85748 5.03337 5.23430 5.28678 5.44791 5.60202 5.70991 5.94256 6.08392 6.75646 7.24935 7.35174 8.88016 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.009129 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.732620 B = 3066.478891 C = 4864.497701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.289 6.289 3 C 0.199 3.801 4 C -0.229 4.229 5 C 0.076 3.924 6 C -0.104 4.104 7 C -0.105 4.105 8 C -0.228 4.228 9 S 0.193 5.807 10 C -0.158 4.158 11 C 0.090 3.910 12 C -0.513 4.513 13 H 0.056 0.944 14 C 0.011 3.989 15 N -0.929 5.929 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.268 1.268 20 O 0.095 5.905 21 N -0.441 5.441 22 H 0.046 0.954 23 H 0.144 0.856 24 H 0.056 0.944 25 H 0.209 0.791 26 H 0.172 0.828 27 H 0.208 0.792 28 H 0.002 0.998 29 H 0.013 0.987 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.832 -9.259 9.134 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.196 6.196 3 C 0.002 3.998 4 C -0.252 4.252 5 C 0.010 3.990 6 C -0.118 4.118 7 C -0.134 4.134 8 C -0.363 4.363 9 S 0.460 5.540 10 C -0.278 4.278 11 C 0.051 3.949 12 C -0.551 4.551 13 H 0.074 0.926 14 C -0.188 4.188 15 N -0.569 5.569 16 Si 0.781 3.219 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.193 1.193 20 O 0.036 5.964 21 N -0.170 5.170 22 H 0.065 0.935 23 H 0.161 0.839 24 H 0.075 0.925 25 H 0.226 0.774 26 H 0.189 0.811 27 H 0.225 0.775 28 H 0.020 0.980 29 H 0.031 0.969 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.398 -7.926 8.335 13.161 hybrid contribution -1.582 -0.803 0.319 1.803 sum 4.816 -8.729 8.654 13.202 Atomic orbital electron populations 1.23296 0.75653 1.06037 1.01836 1.86153 1.23926 1.19929 1.89595 1.22072 0.91584 0.85869 1.00305 1.22161 0.94222 0.94548 1.14220 1.22254 0.85833 0.92125 0.98786 1.16856 0.92553 1.00351 1.02067 1.20105 0.91302 1.02251 0.99728 1.25868 1.05140 1.00684 1.04589 1.82899 1.07823 1.33839 1.29488 1.24731 1.02103 0.98604 1.02348 1.17585 0.91275 0.95324 0.90691 1.21177 1.15670 1.20660 0.97602 0.92580 1.25791 0.98789 0.99156 0.95058 1.70064 1.34830 1.44399 1.07562 0.85568 0.78116 0.79511 0.78717 1.18997 1.20979 1.19265 1.85087 1.13138 1.29627 1.68553 1.74088 1.17304 0.97170 1.28397 0.93474 0.83861 0.92513 0.77410 0.81109 0.77548 0.98014 0.96896 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.73 113.37 1.22 1.86 16 2 O -0.29 -9.12 10.57 -90.47 -0.96 -10.07 16 3 C 0.20 7.44 7.98 85.64 0.68 8.12 16 4 C -0.23 -7.85 11.13 22.72 0.25 -7.60 16 5 C 0.08 3.05 6.14 24.44 0.15 3.20 16 6 C -0.10 -3.92 5.73 -21.22 -0.12 -4.04 16 7 C -0.11 -2.88 10.09 21.48 0.22 -2.66 16 8 C -0.23 -5.44 11.19 66.66 0.75 -4.69 16 9 S 0.19 6.11 23.04 -56.49 -1.30 4.81 16 10 C -0.16 -6.66 5.51 24.87 0.14 -6.52 16 11 C 0.09 4.76 4.99 29.10 0.15 4.90 16 12 C -0.51 -29.15 9.09 25.60 0.23 -28.92 16 13 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 14 C 0.01 0.61 5.46 84.66 0.46 1.07 16 15 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 16 Si 0.96 45.52 29.54 68.60 2.03 47.54 16 17 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 O 0.09 4.48 11.07 66.84 0.74 5.22 16 21 N -0.44 -19.39 11.52 -171.84 -1.98 -21.37 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.21 5.33 8.06 -2.91 -0.02 5.30 16 26 H 0.17 3.53 8.06 -2.91 -0.02 3.50 16 27 H 0.21 3.04 8.06 -2.91 -0.02 3.02 16 28 H 0.00 0.10 7.55 -2.38 -0.02 0.08 16 29 H 0.01 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -70.31 288.74 4.10 -66.21 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: 1.16 Total: -0.64 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 4.12 Total: -35.27 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.69 Total: -77.80 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.22 Total: -4.85 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -1.30 Total: 4.81 kcal Total: -70.31 4.10 -66.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075987405.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.953 kcal (2) G-P(sol) polarization free energy of solvation -70.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds