Wall clock time and date at job start Mon Mar 30 2020 06:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00135 * 2 1 4 4 H 1.48504 * 109.47275 * 270.00153 * 3 2 1 5 5 H 1.48499 * 109.47271 * 30.00302 * 3 2 1 6 6 H 1.48502 * 109.47436 * 150.00405 * 3 2 1 7 7 C 1.37877 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99934 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46727 * 179.97438 * 9 7 2 11 11 C 1.35991 * 126.36176 * 270.00119 * 10 9 7 12 12 C 1.50696 * 124.94275 * 359.97438 * 11 10 9 13 13 Cl 1.80300 * 109.46730 * 90.00313 * 12 11 10 14 14 N 1.30121 * 110.10845 * 179.76882 * 11 10 9 15 15 C 1.35791 * 109.67484 * 0.38483 * 14 11 10 16 16 C 1.39749 * 133.49164 * 179.91872 * 15 14 11 17 17 C 1.38194 * 119.71094 * 179.70078 * 16 15 14 18 18 N 1.39921 * 119.81871 * 179.97438 * 17 16 15 19 19 C 1.39385 * 120.36446 * 359.95372 * 17 16 15 20 20 C 1.37752 * 120.38765 * 0.04585 * 19 17 16 21 21 C 1.38294 * 126.35254 * 90.00521 * 10 9 7 22 22 H 0.97006 * 119.99785 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46914 * 60.00078 * 9 7 2 24 24 H 1.08996 * 109.47180 * 299.99869 * 9 7 2 25 25 H 1.08996 * 109.47543 * 210.00135 * 12 11 10 26 26 H 1.09004 * 109.47354 * 330.00399 * 12 11 10 27 27 H 1.08002 * 120.14695 * 359.66928 * 16 15 14 28 28 H 0.97008 * 119.99755 * 180.02562 * 18 17 16 29 29 H 0.97002 * 120.00114 * 359.97438 * 18 17 16 30 30 H 1.07998 * 119.80813 * 180.02562 * 19 17 16 31 31 H 1.08001 * 120.03145 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.7261 -4.2260 -1.0938 12 6 2.4107 -3.8598 -2.5212 13 17 3.5766 -2.6087 -3.0922 14 7 3.5419 -5.1721 -0.7298 15 6 3.5917 -5.2364 0.6257 16 6 4.2877 -6.0486 1.5251 17 6 4.1272 -5.8592 2.8845 18 7 4.8225 -6.6715 3.7871 19 6 3.2768 -4.8632 3.3616 20 6 2.5862 -4.0571 2.4836 21 6 2.7364 -4.2353 1.1151 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5574 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 2.4919 -4.7462 -3.1502 26 1 1.3964 -3.4648 -2.5794 27 1 4.9477 -6.8214 1.1593 28 1 4.7115 -6.5411 4.7419 29 1 5.4149 -7.3655 3.4580 30 1 3.1584 -4.7227 4.4258 31 1 1.9285 -3.2874 2.8596 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076041246.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:37 Heat of formation + Delta-G solvation = 53.853583 kcal Electronic energy + Delta-G solvation = -17431.091469 eV Core-core repulsion = 14545.370261 eV Total energy + Delta-G solvation = -2885.721208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.40239 -37.60590 -35.56023 -34.13956 -33.31638 -32.24881 -30.08649 -28.96655 -27.23275 -26.07802 -23.31021 -21.83313 -21.15165 -19.26222 -17.20685 -16.86829 -16.61309 -15.95795 -15.08669 -14.89962 -14.42454 -13.90468 -13.46880 -13.33044 -13.06079 -12.95439 -12.61467 -12.32225 -11.92894 -11.72611 -11.26258 -10.95557 -10.85587 -10.30671 -10.24497 -10.07000 -9.95788 -9.77031 -9.31849 -8.95972 -8.67463 -7.55099 -6.82273 -6.29421 -4.37444 1.37843 2.26272 2.51708 3.20544 3.26963 3.31298 3.56143 3.67484 4.06405 4.27642 4.46675 4.57748 5.04519 5.09479 5.33001 5.46227 5.52449 5.86998 5.91373 5.93770 6.06376 6.41449 6.63085 6.75467 6.86649 7.01590 7.22005 7.41014 7.63930 7.79706 7.81086 7.94996 8.02323 8.54576 8.70223 9.30409 10.77294 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.007365 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.192334 B = 3801.034396 C = 4863.988176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.066 0.934 9 C 0.236 3.764 10 N -0.443 5.443 11 C 0.263 3.737 12 C 0.052 3.948 13 Cl -0.152 7.152 14 N -0.507 5.507 15 C 0.086 3.914 16 C -0.165 4.165 17 C 0.196 3.804 18 N -0.886 5.886 19 C -0.176 4.176 20 C -0.049 4.049 21 C 0.017 3.983 22 H 0.268 0.732 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.393 0.607 29 H 0.393 0.607 30 H 0.121 0.879 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.055 -9.360 2.456 10.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.085 0.915 9 C 0.118 3.882 10 N -0.128 5.128 11 C -0.002 4.002 12 C -0.012 4.012 13 Cl -0.126 7.126 14 N -0.231 5.231 15 C -0.036 4.036 16 C -0.191 4.191 17 C 0.092 3.908 18 N -0.427 5.427 19 C -0.199 4.199 20 C -0.069 4.069 21 C -0.095 4.095 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.221 0.779 29 H 0.221 0.779 30 H 0.139 0.861 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.230 -9.442 1.824 10.506 hybrid contribution 0.139 1.453 0.785 1.657 sum 4.369 -7.989 2.609 9.472 Atomic orbital electron populations 1.69915 1.06025 1.27680 1.49354 1.24878 0.94875 0.99379 0.94290 0.86417 0.79836 0.82347 0.78559 1.20171 1.20965 1.19637 1.21241 0.93767 0.89273 1.52676 0.91536 1.19769 0.86921 0.81895 0.99654 1.45897 1.35749 1.27639 1.03523 1.22821 0.94764 0.92167 0.90408 1.22353 0.95779 0.94407 0.88709 1.98737 1.65069 1.59274 1.89523 1.70284 1.20594 1.21238 1.10989 1.18642 0.98385 0.96672 0.89893 1.19193 1.06428 1.04013 0.89451 1.17250 0.92966 0.91577 0.89028 1.42284 1.53028 1.40338 1.07066 1.20254 1.01999 0.98824 0.98811 1.19825 0.99214 0.98719 0.89186 1.18782 1.02238 0.98775 0.89681 0.92281 0.93406 0.93389 0.86476 0.86881 0.86455 0.77931 0.77934 0.86068 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.17 13.29 55.43 0.74 -23.44 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.53 -13.85 9.39 -34.44 -0.32 -14.18 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.24 5.61 5.69 -5.19 -0.03 5.58 16 10 N -0.44 -9.74 2.79 -112.39 -0.31 -10.06 16 11 C 0.26 5.38 7.23 -154.86 -1.12 4.26 16 12 C 0.05 0.88 6.94 36.00 0.25 1.13 16 13 Cl -0.15 -2.81 29.13 -51.86 -1.51 -4.32 16 14 N -0.51 -10.66 11.27 -8.25 -0.09 -10.76 16 15 C 0.09 1.78 7.22 -84.71 -0.61 1.17 16 16 C -0.16 -2.86 9.93 -39.03 -0.39 -3.24 16 17 C 0.20 2.95 6.74 -83.75 -0.56 2.39 16 18 N -0.89 -9.44 9.10 32.42 0.29 -9.15 16 19 C -0.18 -2.74 9.87 -39.33 -0.39 -3.13 16 20 C -0.05 -0.90 10.03 -39.54 -0.40 -1.30 16 21 C 0.02 0.36 6.88 -83.89 -0.58 -0.22 16 22 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 23 H 0.05 1.14 6.99 -51.93 -0.36 0.78 16 24 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 26 H 0.11 1.81 7.01 -51.93 -0.36 1.44 16 27 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.39 3.32 8.84 -40.82 -0.36 2.96 16 29 H 0.39 3.50 8.84 -40.82 -0.36 3.14 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 290.07 15.07 4.37 4.37 Total: -1.00 -29.78 290.07 -8.89 -38.67 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -3.11 Total: 4.62 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -4.25 Total: -5.83 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.62 Total: -53.40 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -1.51 Total: -4.32 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.78 -8.89 -38.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076041246.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.519 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds