Wall clock time and date at job start Mon Mar 30 2020 06:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00135 * 2 1 4 4 H 1.48504 * 109.47275 * 270.00153 * 3 2 1 5 5 H 1.48499 * 109.47271 * 30.00302 * 3 2 1 6 6 H 1.48502 * 109.47436 * 150.00405 * 3 2 1 7 7 C 1.37877 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99934 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46727 * 179.97438 * 9 7 2 11 11 C 1.35991 * 126.36176 * 270.00119 * 10 9 7 12 12 C 1.50696 * 124.94275 * 359.97438 * 11 10 9 13 13 Cl 1.80300 * 109.46730 * 90.00313 * 12 11 10 14 14 N 1.30121 * 110.10845 * 179.76882 * 11 10 9 15 15 C 1.35791 * 109.67484 * 0.38483 * 14 11 10 16 16 C 1.39749 * 133.49164 * 179.91872 * 15 14 11 17 17 C 1.38194 * 119.71094 * 179.70078 * 16 15 14 18 18 N 1.39921 * 119.81871 * 179.97438 * 17 16 15 19 19 C 1.39385 * 120.36446 * 359.95372 * 17 16 15 20 20 C 1.37752 * 120.38765 * 0.04585 * 19 17 16 21 21 C 1.38294 * 126.35254 * 90.00521 * 10 9 7 22 22 H 0.97006 * 119.99785 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46914 * 60.00078 * 9 7 2 24 24 H 1.08996 * 109.47180 * 299.99869 * 9 7 2 25 25 H 1.08996 * 109.47543 * 210.00135 * 12 11 10 26 26 H 1.09004 * 109.47354 * 330.00399 * 12 11 10 27 27 H 1.08002 * 120.14695 * 359.66928 * 16 15 14 28 28 H 0.97008 * 119.99755 * 180.02562 * 18 17 16 29 29 H 0.97002 * 120.00114 * 359.97438 * 18 17 16 30 30 H 1.07998 * 119.80813 * 180.02562 * 19 17 16 31 31 H 1.08001 * 120.03145 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.7261 -4.2260 -1.0938 12 6 2.4107 -3.8598 -2.5212 13 17 3.5766 -2.6087 -3.0922 14 7 3.5419 -5.1721 -0.7298 15 6 3.5917 -5.2364 0.6257 16 6 4.2877 -6.0486 1.5251 17 6 4.1272 -5.8592 2.8845 18 7 4.8225 -6.6715 3.7871 19 6 3.2768 -4.8632 3.3616 20 6 2.5862 -4.0571 2.4836 21 6 2.7364 -4.2353 1.1151 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5574 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 2.4919 -4.7462 -3.1502 26 1 1.3964 -3.4648 -2.5794 27 1 4.9477 -6.8214 1.1593 28 1 4.7115 -6.5411 4.7419 29 1 5.4149 -7.3655 3.4580 30 1 3.1584 -4.7227 4.4258 31 1 1.9285 -3.2874 2.8596 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076041246.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:37 Heat of formation + Delta-G solvation = 35.886038 kcal Electronic energy + Delta-G solvation = -17431.870600 eV Core-core repulsion = 14545.370261 eV Total energy + Delta-G solvation = -2886.500339 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.90243 -38.91119 -36.96936 -35.94762 -34.54387 -34.06370 -31.47882 -30.38800 -28.98501 -27.45536 -25.18406 -23.22067 -22.55601 -20.81461 -18.80945 -18.54079 -18.01975 -17.29289 -16.57707 -16.46051 -16.06876 -15.26910 -14.92215 -14.78359 -14.51489 -14.35326 -14.30683 -13.73683 -13.55671 -13.32285 -12.96290 -12.73752 -12.49002 -12.12077 -11.95968 -11.64199 -11.36573 -11.23852 -10.89213 -10.67688 -10.48583 -9.00272 -8.36266 -8.04416 -6.44861 -0.03718 0.86465 1.12295 1.36168 1.38477 1.47572 1.99609 2.18037 2.36882 2.91515 3.00604 3.06081 3.26919 3.63354 4.03221 4.19571 4.22042 4.41892 4.49997 4.55287 4.63057 4.92654 4.98626 5.26945 5.37506 5.58328 5.70030 5.76304 5.83496 5.89561 6.30367 6.66177 6.70580 7.01010 7.19453 7.25895 8.75274 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.007365 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.192334 B = 3801.034396 C = 4863.988176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.031 3.969 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.047 0.953 9 C 0.254 3.746 10 N -0.457 5.457 11 C 0.252 3.748 12 C 0.055 3.945 13 Cl -0.167 7.167 14 N -0.519 5.519 15 C 0.064 3.936 16 C -0.180 4.180 17 C 0.212 3.788 18 N -0.864 5.864 19 C -0.160 4.160 20 C -0.071 4.071 21 C -0.018 4.018 22 H 0.271 0.729 23 H 0.044 0.956 24 H 0.031 0.969 25 H 0.150 0.850 26 H 0.119 0.881 27 H 0.133 0.867 28 H 0.409 0.591 29 H 0.406 0.594 30 H 0.158 0.842 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.050 -10.149 3.701 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.170 4.170 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.065 0.935 9 C 0.134 3.866 10 N -0.144 5.144 11 C -0.013 4.013 12 C -0.009 4.009 13 Cl -0.141 7.141 14 N -0.243 5.243 15 C -0.057 4.057 16 C -0.207 4.207 17 C 0.106 3.894 18 N -0.406 5.406 19 C -0.182 4.182 20 C -0.092 4.092 21 C -0.129 4.129 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.168 0.832 26 H 0.137 0.863 27 H 0.151 0.849 28 H 0.239 0.761 29 H 0.236 0.764 30 H 0.175 0.825 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.258 -10.277 3.112 11.956 hybrid contribution -0.107 1.557 0.550 1.655 sum 5.152 -8.720 3.662 10.769 Atomic orbital electron populations 1.69978 1.06956 1.28523 1.49951 1.25503 0.95557 1.01943 0.93990 0.85610 0.78562 0.79321 0.78619 1.19756 1.19924 1.20114 1.21262 0.92828 0.90604 1.52602 0.93496 1.19335 0.86874 0.81952 0.98435 1.45785 1.36280 1.27761 1.04594 1.23368 0.94637 0.92033 0.91259 1.22620 0.95462 0.95195 0.87598 1.98731 1.65717 1.60141 1.89490 1.70264 1.20881 1.21571 1.11566 1.19077 0.99145 0.97438 0.90076 1.19436 1.06830 1.04321 0.90071 1.17296 0.92055 0.91165 0.88930 1.42232 1.51729 1.39281 1.07365 1.20635 1.00156 0.97329 1.00130 1.20004 1.00485 0.99883 0.88829 1.19234 1.03434 0.99714 0.90480 0.91948 0.93860 0.95115 0.83180 0.86303 0.84919 0.76081 0.76445 0.82463 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.92 13.29 21.45 0.28 -49.63 16 2 C 0.03 1.66 5.46 84.65 0.46 2.12 16 3 Si 0.95 42.83 29.54 68.60 2.03 44.85 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.53 -28.44 9.39 25.60 0.24 -28.20 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.25 12.43 5.69 85.63 0.49 12.92 16 10 N -0.46 -20.66 2.79 -509.49 -1.42 -22.08 16 11 C 0.25 10.41 7.23 137.93 1.00 11.41 16 12 C 0.06 1.86 6.94 71.23 0.49 2.35 16 13 Cl -0.17 -6.16 29.13 -2.72 -0.08 -6.24 16 14 N -0.52 -21.88 11.27 -180.01 -2.03 -23.91 16 15 C 0.06 2.63 7.22 39.44 0.28 2.91 16 16 C -0.18 -5.95 9.93 22.63 0.22 -5.72 16 17 C 0.21 5.79 6.74 38.12 0.26 6.05 16 18 N -0.86 -14.85 9.10 -51.36 -0.47 -15.31 16 19 C -0.16 -4.59 9.87 22.43 0.22 -4.37 16 20 C -0.07 -2.63 10.03 22.29 0.22 -2.41 16 21 C -0.02 -0.79 6.88 38.81 0.27 -0.52 16 22 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 23 H 0.04 2.13 6.99 -2.38 -0.02 2.11 16 24 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.15 3.95 8.14 -2.39 -0.02 3.93 16 26 H 0.12 3.82 7.01 -2.38 -0.02 3.80 16 27 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 28 H 0.41 4.97 8.84 -92.70 -0.82 4.15 16 29 H 0.41 5.54 8.84 -92.71 -0.82 4.72 16 30 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 31 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -64.35 290.07 2.02 -62.33 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -0.45 Total: 13.47 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 4.16 Total: -3.48 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -3.63 Total: -110.94 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 17 Polarization: -6.16 SS G_CDS: -0.08 Total: -6.24 kcal Total: -64.35 2.02 -62.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076041246.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.216 kcal (2) G-P(sol) polarization free energy of solvation -64.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds