Wall clock time and date at job start Mon Mar 30 2020 06:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33854 * 124.49669 * 2 1 4 4 C 1.37432 * 115.13301 * 180.17951 * 3 2 1 5 5 C 1.37048 * 113.21874 * 359.53947 * 4 3 2 6 6 C 1.41580 * 125.47433 * 180.24817 * 5 4 3 7 7 C 1.35652 * 120.00302 * 179.97438 * 6 5 4 8 8 C 1.41473 * 120.00412 * 179.97438 * 7 6 5 9 9 O 1.21782 * 119.99717 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99977 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99875 * 0.02562 * 10 8 7 12 12 C 1.46498 * 119.99887 * 180.02562 * 10 8 7 13 13 C 1.50700 * 109.47306 * 90.00164 * 12 10 8 14 14 H 1.07995 * 119.99608 * 0.02562 * 13 12 10 15 15 C 1.37876 * 119.99862 * 179.97438 * 13 12 10 16 16 N 1.31506 * 120.00399 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99697 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47099 * 60.00259 * 17 15 13 19 19 H 1.48494 * 109.47102 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47108 * 300.00127 * 17 15 13 21 21 S 1.70614 * 124.49023 * 179.69352 * 2 1 3 22 22 H 1.09000 * 109.47223 * 180.28135 * 1 2 3 23 23 H 1.09005 * 109.46674 * 300.28010 * 1 2 3 24 24 H 1.08993 * 109.46822 * 60.28072 * 1 2 3 25 25 H 1.08000 * 122.43180 * 359.97438 * 3 2 1 26 26 H 1.08002 * 123.39448 * 179.81267 * 4 3 2 27 27 H 1.08008 * 120.00158 * 0.02562 * 6 5 4 28 28 H 1.08008 * 119.99540 * 0.02562 * 7 6 5 29 29 H 1.09001 * 109.47080 * 90.00065 * 11 10 8 30 30 H 1.09008 * 109.46809 * 209.99653 * 11 10 8 31 31 H 1.08999 * 109.47280 * 329.99537 * 11 10 8 32 32 H 1.08997 * 109.47005 * 210.00272 * 12 10 8 33 33 H 1.09004 * 109.47068 * 330.00137 * 12 10 8 34 34 H 0.97001 * 120.00464 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2651 1.1032 0.0000 4 6 3.6211 0.8796 -0.0039 5 6 3.9493 -0.4510 0.0030 6 6 5.2656 -0.9726 0.0061 7 6 5.4634 -2.3146 0.0136 8 6 6.7786 -2.8358 0.0161 9 8 7.7332 -2.0797 0.0121 10 7 6.9750 -4.1692 0.0240 11 6 5.8266 -5.0788 0.0295 12 6 8.3369 -4.7089 0.0272 13 6 8.8040 -4.8856 1.4491 14 1 8.1514 -4.6225 2.2684 15 6 10.0640 -5.3840 1.7039 16 7 10.8585 -5.7047 0.7062 17 14 10.6426 -5.6036 3.4664 18 1 9.7354 -6.5443 4.1716 19 1 12.0232 -6.1506 3.4696 20 1 10.6295 -4.2901 4.1590 21 16 2.4732 -1.4062 0.0075 22 1 -0.3634 -1.0276 0.0050 23 1 -0.3633 0.5182 0.8875 24 1 -0.3633 0.5094 -0.8924 25 1 1.8419 2.0968 -0.0004 26 1 4.3544 1.6725 -0.0073 27 1 6.1122 -0.3020 0.0034 28 1 4.6167 -2.9852 0.0167 29 1 5.5417 -5.3105 -0.9969 30 1 6.0944 -5.9990 0.5488 31 1 4.9892 -4.6037 0.5405 32 1 8.3468 -5.6731 -0.4809 33 1 9.0026 -4.0184 -0.4907 34 1 11.7451 -6.0551 0.8855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078541258.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:27 Heat of formation + Delta-G solvation = 11.422923 kcal Electronic energy + Delta-G solvation = -16794.706982 eV Core-core repulsion = 14012.729893 eV Total energy + Delta-G solvation = -2781.977090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.20124 -38.21570 -34.94317 -34.19185 -32.58311 -31.21644 -28.22396 -26.84078 -25.64083 -23.89386 -23.06587 -21.21253 -19.44778 -18.21198 -16.79735 -16.51564 -16.45358 -15.28520 -15.17022 -14.45072 -14.31307 -14.22913 -13.62452 -13.11907 -12.99185 -12.75971 -12.37157 -12.29133 -12.26088 -12.06110 -11.84116 -11.55594 -11.14512 -10.89792 -10.79758 -10.51446 -10.16787 -10.11315 -9.60892 -8.98303 -8.69810 -8.40234 -7.98962 -7.54186 -6.00916 -4.05800 0.20479 1.41545 1.84265 1.86094 2.79312 3.34380 3.38501 3.42009 4.04093 4.16020 4.48387 4.59524 4.90741 4.95656 5.19934 5.20006 5.25098 5.32739 5.38293 5.56481 5.63669 5.75958 5.84084 5.96429 6.08810 6.19622 6.24321 6.42266 6.49814 7.13266 7.48528 7.58258 7.95556 8.27014 8.45230 8.93226 9.12544 9.59010 11.07039 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.037990 B = 0.003688 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.866905 B = 7589.728000 C = 7690.074410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.220 4.220 3 C -0.147 4.147 4 C -0.108 4.108 5 C -0.180 4.180 6 C -0.010 4.010 7 C -0.198 4.198 8 C 0.535 3.465 9 O -0.547 6.547 10 N -0.597 5.597 11 C 0.082 3.918 12 C 0.244 3.756 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 S 0.188 5.812 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.137 0.863 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.121 0.879 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.320 9.051 -2.486 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.339 4.339 3 C -0.178 4.178 4 C -0.139 4.139 5 C -0.298 4.298 6 C -0.031 4.031 7 C -0.221 4.221 8 C 0.325 3.675 9 O -0.428 6.428 10 N -0.328 5.328 11 C -0.062 4.062 12 C 0.125 3.875 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 S 0.457 5.543 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.155 0.845 26 H 0.164 0.836 27 H 0.164 0.836 28 H 0.138 0.862 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.970 7.779 -2.528 22.509 hybrid contribution 0.596 1.317 1.002 1.759 sum -20.375 9.095 -1.526 22.365 Atomic orbital electron populations 1.20322 0.87849 1.02859 1.02940 1.24145 1.01298 0.98154 1.10333 1.19852 0.92938 0.99241 1.05747 1.20887 0.96269 0.95210 1.01501 1.22656 0.97053 0.96831 1.13243 1.20684 0.93490 0.95826 0.93139 1.22396 0.98138 0.95784 1.05817 1.16799 0.88909 0.83003 0.78782 1.90798 1.43742 1.57494 1.50762 1.48108 1.09251 1.04957 1.70523 1.21689 0.88864 0.95177 1.00497 1.19293 0.76344 0.94345 0.97508 1.21410 1.00058 1.42775 0.92283 0.92493 1.24935 0.96335 0.95377 0.97463 1.69921 1.08819 1.43880 1.30846 0.86551 0.77674 0.78485 0.84681 1.20240 1.21166 1.20157 1.83084 0.94860 1.07690 1.68682 0.91491 0.90625 0.90632 0.84518 0.83556 0.83642 0.86176 0.93638 0.90651 0.92411 0.94963 0.93720 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.33 36.01 0.37 -0.16 16 2 C -0.22 -2.11 6.28 -35.85 -0.23 -2.33 16 3 C -0.15 -1.44 9.99 -41.41 -0.41 -1.85 16 4 C -0.11 -1.20 10.25 -40.31 -0.41 -1.61 16 5 C -0.18 -2.31 6.21 -38.74 -0.24 -2.55 16 6 C -0.01 -0.15 9.37 -39.23 -0.37 -0.51 16 7 C -0.20 -3.34 8.57 -39.28 -0.34 -3.67 16 8 C 0.53 11.85 7.44 -15.03 -0.11 11.74 16 9 O -0.55 -14.36 15.69 5.12 0.08 -14.28 16 10 N -0.60 -13.35 2.86 -186.44 -0.53 -13.88 16 11 C 0.08 1.36 10.12 59.85 0.61 1.97 16 12 C 0.24 6.61 5.16 -5.19 -0.03 6.58 16 13 C -0.53 -15.34 9.39 -34.44 -0.32 -15.66 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 16 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 17 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 S 0.19 2.02 21.69 -107.50 -2.33 -0.31 16 22 H 0.07 0.40 8.11 -51.93 -0.42 -0.03 16 23 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 26 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.15 2.31 7.46 -52.48 -0.39 1.92 16 28 H 0.12 1.70 5.06 -52.48 -0.27 1.43 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.27 8.07 -51.92 -0.42 0.85 16 31 H 0.06 0.80 6.08 -51.93 -0.32 0.49 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 1.35 7.42 -51.93 -0.39 0.97 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 309.87 15.07 4.67 4.67 Total: -1.00 -33.98 309.87 -8.25 -42.24 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.28 Total: -2.90 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.58 Total: -6.41 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.20 Total: -40.21 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.08 Total: -14.28 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.33 Total: -0.31 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.98 -8.25 -42.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078541258.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.658 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds