Wall clock time and date at job start Mon Mar 30 2020 06:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33854 * 124.49669 * 2 1 4 4 C 1.37432 * 115.13301 * 180.17951 * 3 2 1 5 5 C 1.37048 * 113.21874 * 359.53947 * 4 3 2 6 6 C 1.41580 * 125.47433 * 180.24817 * 5 4 3 7 7 C 1.35652 * 120.00302 * 179.97438 * 6 5 4 8 8 C 1.41473 * 120.00412 * 179.97438 * 7 6 5 9 9 O 1.21782 * 119.99717 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99977 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99875 * 0.02562 * 10 8 7 12 12 C 1.46498 * 119.99887 * 180.02562 * 10 8 7 13 13 C 1.50700 * 109.47306 * 90.00164 * 12 10 8 14 14 H 1.07995 * 119.99608 * 0.02562 * 13 12 10 15 15 C 1.37876 * 119.99862 * 179.97438 * 13 12 10 16 16 N 1.31506 * 120.00399 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99697 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47099 * 60.00259 * 17 15 13 19 19 H 1.48494 * 109.47102 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47108 * 300.00127 * 17 15 13 21 21 S 1.70614 * 124.49023 * 179.69352 * 2 1 3 22 22 H 1.09000 * 109.47223 * 180.28135 * 1 2 3 23 23 H 1.09005 * 109.46674 * 300.28010 * 1 2 3 24 24 H 1.08993 * 109.46822 * 60.28072 * 1 2 3 25 25 H 1.08000 * 122.43180 * 359.97438 * 3 2 1 26 26 H 1.08002 * 123.39448 * 179.81267 * 4 3 2 27 27 H 1.08008 * 120.00158 * 0.02562 * 6 5 4 28 28 H 1.08008 * 119.99540 * 0.02562 * 7 6 5 29 29 H 1.09001 * 109.47080 * 90.00065 * 11 10 8 30 30 H 1.09008 * 109.46809 * 209.99653 * 11 10 8 31 31 H 1.08999 * 109.47280 * 329.99537 * 11 10 8 32 32 H 1.08997 * 109.47005 * 210.00272 * 12 10 8 33 33 H 1.09004 * 109.47068 * 330.00137 * 12 10 8 34 34 H 0.97001 * 120.00464 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2651 1.1032 0.0000 4 6 3.6211 0.8796 -0.0039 5 6 3.9493 -0.4510 0.0030 6 6 5.2656 -0.9726 0.0061 7 6 5.4634 -2.3146 0.0136 8 6 6.7786 -2.8358 0.0161 9 8 7.7332 -2.0797 0.0121 10 7 6.9750 -4.1692 0.0240 11 6 5.8266 -5.0788 0.0295 12 6 8.3369 -4.7089 0.0272 13 6 8.8040 -4.8856 1.4491 14 1 8.1514 -4.6225 2.2684 15 6 10.0640 -5.3840 1.7039 16 7 10.8585 -5.7047 0.7062 17 14 10.6426 -5.6036 3.4664 18 1 9.7354 -6.5443 4.1716 19 1 12.0232 -6.1506 3.4696 20 1 10.6295 -4.2901 4.1590 21 16 2.4732 -1.4062 0.0075 22 1 -0.3634 -1.0276 0.0050 23 1 -0.3633 0.5182 0.8875 24 1 -0.3633 0.5094 -0.8924 25 1 1.8419 2.0968 -0.0004 26 1 4.3544 1.6725 -0.0073 27 1 6.1122 -0.3020 0.0034 28 1 4.6167 -2.9852 0.0167 29 1 5.5417 -5.3105 -0.9969 30 1 6.0944 -5.9990 0.5488 31 1 4.9892 -4.6037 0.5405 32 1 8.3468 -5.6731 -0.4809 33 1 9.0026 -4.0184 -0.4907 34 1 11.7451 -6.0551 0.8855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078541258.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:27 Heat of formation + Delta-G solvation = -9.592279 kcal Electronic energy + Delta-G solvation = -16795.618270 eV Core-core repulsion = 14012.729893 eV Total energy + Delta-G solvation = -2782.888377 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85541 -39.10153 -36.69384 -35.41389 -34.69812 -32.14989 -30.04208 -28.06564 -27.19196 -25.32515 -24.23772 -22.64146 -20.41178 -19.70216 -18.70033 -18.07758 -17.68812 -16.91034 -16.27072 -16.21280 -15.99093 -15.00125 -14.71677 -14.40129 -14.30345 -13.94943 -13.77387 -13.59059 -13.39758 -13.34524 -13.17551 -12.95679 -12.76522 -12.53427 -12.41082 -12.19753 -11.75346 -11.68181 -11.18953 -10.75890 -10.65119 -9.51745 -9.48370 -8.90044 -8.22505 -6.38614 -0.82250 0.56889 0.80389 1.01647 1.35958 1.40914 1.48440 1.82936 2.31648 2.51265 2.58095 3.05920 3.78464 3.93084 4.00298 4.27225 4.33897 4.38464 4.50153 4.68274 4.71588 4.76753 4.87828 4.91907 5.01226 5.11161 5.15679 5.23420 5.24250 5.40999 5.54696 5.55387 5.84154 6.05173 6.68128 6.76238 7.26255 7.45079 8.84080 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.037990 B = 0.003688 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.866905 B = 7589.728000 C = 7690.074410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.201 4.201 3 C -0.164 4.164 4 C -0.085 4.085 5 C -0.234 4.234 6 C 0.030 3.970 7 C -0.234 4.234 8 C 0.530 3.470 9 O -0.609 6.609 10 N -0.608 5.608 11 C 0.077 3.923 12 C 0.259 3.741 13 C -0.547 4.547 14 H 0.052 0.948 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.970 3.030 18 H -0.259 1.259 19 H -0.276 1.276 20 H -0.278 1.278 21 S 0.203 5.797 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.163 0.837 26 H 0.159 0.841 27 H 0.129 0.871 28 H 0.149 0.851 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.026 0.974 33 H -0.002 1.002 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.632 9.817 -1.457 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.320 4.320 3 C -0.194 4.194 4 C -0.117 4.117 5 C -0.351 4.351 6 C 0.008 3.992 7 C -0.257 4.257 8 C 0.324 3.676 9 O -0.494 6.494 10 N -0.338 5.338 11 C -0.065 4.065 12 C 0.137 3.863 13 C -0.585 4.585 14 H 0.070 0.930 15 C -0.192 4.192 16 N -0.568 5.568 17 Si 0.794 3.206 18 H -0.183 1.183 19 H -0.201 1.201 20 H -0.204 1.204 21 S 0.471 5.529 22 H 0.094 0.906 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.181 0.819 26 H 0.177 0.823 27 H 0.147 0.853 28 H 0.166 0.834 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.016 0.984 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.331 8.504 -1.508 25.818 hybrid contribution 1.399 1.284 0.616 1.996 sum -22.932 9.788 -0.892 24.949 Atomic orbital electron populations 1.20509 0.85429 1.04003 1.04444 1.24711 1.02925 0.97483 1.06908 1.20130 0.92221 1.00693 1.06354 1.21259 0.97526 0.94871 0.98070 1.22552 0.96715 0.98109 1.17700 1.20696 0.94558 0.95053 0.88864 1.22014 0.95784 0.96667 1.11194 1.17567 0.90406 0.82443 0.77215 1.90746 1.45992 1.58743 1.53935 1.48115 1.08879 1.06100 1.70707 1.21973 0.87690 0.94157 1.02655 1.18770 0.78612 0.92723 0.96170 1.21681 1.00705 1.43193 0.92939 0.92962 1.25896 0.96291 0.94718 1.02290 1.70044 1.09247 1.44283 1.33254 0.85430 0.77764 0.78530 0.78857 1.18321 1.20074 1.20352 1.83027 0.93752 1.07970 1.68117 0.90638 0.89049 0.88975 0.81910 0.82347 0.85304 0.83400 0.91004 0.91111 0.89196 0.95630 0.98409 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.33 71.24 0.74 -0.01 16 2 C -0.20 -3.08 6.28 24.69 0.16 -2.92 16 3 C -0.16 -2.61 9.99 21.08 0.21 -2.40 16 4 C -0.09 -1.69 10.25 21.80 0.22 -1.46 16 5 C -0.23 -5.63 6.21 22.81 0.14 -5.49 16 6 C 0.03 0.92 9.37 22.50 0.21 1.14 16 7 C -0.23 -7.98 8.57 22.47 0.19 -7.79 16 8 C 0.53 24.61 7.44 85.04 0.63 25.24 16 9 O -0.61 -34.23 15.69 -4.61 -0.07 -34.30 16 10 N -0.61 -28.21 2.86 -861.95 -2.46 -30.68 16 11 C 0.08 2.53 10.12 127.77 1.29 3.82 16 12 C 0.26 14.79 5.16 85.63 0.44 15.24 16 13 C -0.55 -32.99 9.39 25.60 0.24 -32.75 16 14 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 15 C 0.01 0.42 5.46 84.66 0.46 0.88 16 16 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 17 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 21 S 0.20 3.82 21.69 -56.49 -1.23 2.59 16 22 H 0.07 0.57 8.11 -2.39 -0.02 0.55 16 23 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 24 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 26 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 27 H 0.13 4.30 7.46 -2.91 -0.02 4.28 16 28 H 0.15 4.02 5.06 -2.91 -0.01 4.01 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.37 8.07 -2.38 -0.02 2.35 16 31 H 0.09 2.35 6.08 -2.39 -0.01 2.33 16 32 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 33 H 0.00 -0.15 7.42 -2.38 -0.02 -0.16 16 34 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -77.81 309.87 4.59 -73.22 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.10 Total: 5.01 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.94 Total: -6.51 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -2.18 Total: -88.14 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.07 Total: -34.30 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.23 Total: 2.59 kcal Total: -77.81 4.59 -73.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078541258.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.632 kcal (2) G-P(sol) polarization free energy of solvation -77.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds