Wall clock time and date at job start Mon Mar 30 2020 06:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.36812 * 125.03499 * 2 1 4 4 H 0.97002 * 125.06364 * 359.96846 * 3 2 1 5 5 C 1.37727 * 109.86852 * 180.24222 * 3 2 1 6 6 C 1.40675 * 107.15522 * 359.76772 * 5 3 2 7 7 C 1.39619 * 119.93255 * 180.02562 * 6 5 3 8 8 C 1.36651 * 119.79577 * 359.97438 * 7 6 5 9 9 C 1.38783 * 120.53282 * 0.02562 * 8 7 6 10 10 C 1.37888 * 120.65494 * 359.97438 * 9 8 7 11 11 Cl 1.73608 * 120.12482 * 180.02562 * 10 9 8 12 12 C 1.34243 * 125.03172 * 179.82628 * 2 1 3 13 13 C 1.50703 * 126.49521 * 0.04352 * 12 2 1 14 14 H 1.08993 * 109.47360 * 345.37134 * 13 12 2 15 15 O 1.42905 * 109.46890 * 225.37416 * 13 12 2 16 16 C 1.50695 * 109.47310 * 105.37533 * 13 12 2 17 17 H 1.07997 * 120.00033 * 359.97438 * 16 13 12 18 18 C 1.37879 * 120.00323 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99674 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 120.00373 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47026 * 60.00191 * 20 18 16 22 22 H 1.48500 * 109.47009 * 300.00055 * 20 18 16 23 23 H 1.48497 * 109.47260 * 180.02562 * 20 18 16 24 24 H 1.08999 * 109.47410 * 274.56842 * 1 2 3 25 25 H 1.09000 * 109.46496 * 34.56740 * 1 2 3 26 26 H 1.09000 * 109.47153 * 154.56630 * 1 2 3 27 27 H 1.08005 * 120.10230 * 180.02562 * 7 6 5 28 28 H 1.07993 * 119.73445 * 179.97438 * 8 7 6 29 29 H 1.08002 * 119.67342 * 179.97438 * 9 8 7 30 30 H 0.96699 * 113.99870 * 293.97672 * 15 13 12 31 31 H 0.97002 * 120.00114 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1202 0.0000 4 1 1.9622 2.0323 -0.0004 5 6 3.6217 0.7599 -0.0055 6 6 3.6705 -0.6460 -0.0036 7 6 4.9039 -1.3003 -0.0077 8 6 6.0595 -0.5708 -0.0140 9 6 6.0176 0.8163 -0.0159 10 6 4.8108 1.4833 -0.0119 11 17 4.7745 3.2190 -0.0150 12 6 2.2776 -1.0992 0.0033 13 6 1.8001 -2.5286 0.0067 14 1 0.7418 -2.5575 0.2657 15 8 2.5463 -3.2778 0.9681 16 6 1.9991 -3.1280 -1.3615 17 1 2.4280 -2.5333 -2.1544 18 6 1.6335 -4.4357 -1.6011 19 7 1.1107 -5.1598 -0.6357 20 14 1.8795 -5.1784 -3.2973 21 1 3.3212 -5.1385 -3.6509 22 1 1.1032 -4.4002 -4.2958 23 1 1.4091 -6.5869 -3.2939 24 1 -0.3634 0.0819 1.0244 25 1 -0.3632 0.8463 -0.5831 26 1 -0.3633 -0.9281 -0.4413 27 1 4.9446 -2.3795 -0.0067 28 1 7.0130 -1.0779 -0.0167 29 1 6.9395 1.3791 -0.0204 30 1 3.4838 -3.3728 0.7509 31 1 0.9827 -4.7740 0.2451 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082334027.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:09 Heat of formation + Delta-G solvation = -16.962336 kcal Electronic energy + Delta-G solvation = -17682.284654 eV Core-core repulsion = 14761.199886 eV Total energy + Delta-G solvation = -2921.084768 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.00346 -37.17779 -36.14330 -35.90813 -32.11978 -31.66134 -30.61488 -29.18728 -27.06313 -25.61926 -22.76106 -22.05135 -21.06776 -19.01193 -17.56652 -17.19800 -16.23531 -15.09452 -14.95205 -14.57516 -14.05519 -13.98187 -13.74885 -13.14656 -13.00331 -12.73303 -12.22451 -12.10373 -12.00827 -11.77310 -11.35015 -11.03875 -10.97626 -10.82553 -10.76857 -10.19386 -10.12310 -9.47366 -8.98026 -8.48714 -8.22091 -7.86631 -7.08132 -6.33779 -4.19121 1.27852 1.84289 2.26142 3.09674 3.37014 3.43084 3.43517 3.62935 4.13714 4.51805 4.99787 5.14410 5.21603 5.32220 5.49585 5.58965 5.62139 5.80935 5.84243 6.00441 6.12880 6.20995 6.30132 6.36949 6.55005 6.82609 7.05304 7.18443 7.31265 7.61095 7.83817 8.01482 8.38519 8.84995 9.09778 9.64117 11.03124 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.006289 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.964872 B = 4451.454257 C = 4910.757011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.052 3.948 3 N -0.591 5.591 4 H 0.409 0.591 5 C 0.101 3.899 6 C -0.078 4.078 7 C -0.047 4.047 8 C -0.152 4.152 9 C -0.095 4.095 10 C -0.052 4.052 11 Cl -0.093 7.093 12 C -0.131 4.131 13 C 0.274 3.726 14 H 0.059 0.941 15 O -0.578 6.578 16 C -0.636 4.636 17 H 0.050 0.950 18 C 0.035 3.965 19 N -0.893 5.893 20 Si 1.065 2.935 21 H -0.287 1.287 22 H -0.288 1.288 23 H -0.282 1.282 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.354 0.646 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.228 12.571 1.228 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 N -0.195 5.195 4 H 0.245 0.755 5 C -0.008 4.008 6 C -0.084 4.084 7 C -0.065 4.065 8 C -0.172 4.172 9 C -0.114 4.114 10 C -0.082 4.082 11 Cl -0.065 7.065 12 C -0.137 4.137 13 C 0.217 3.783 14 H 0.076 0.924 15 O -0.383 6.383 16 C -0.673 4.673 17 H 0.069 0.931 18 C -0.174 4.174 19 N -0.528 5.528 20 Si 0.893 3.107 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.208 1.208 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.200 0.800 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.305 11.404 0.661 12.207 hybrid contribution 0.661 2.336 0.424 2.464 sum 4.965 13.740 1.085 14.649 Atomic orbital electron populations 1.20408 0.87895 1.03929 1.02214 1.20066 0.93356 0.84990 1.06876 1.41569 1.03427 1.08049 1.66406 0.75477 1.17792 0.83962 0.93840 1.05193 1.19069 0.94114 0.90256 1.04961 1.20508 0.90303 1.00329 0.95361 1.20489 0.98329 0.92690 1.05675 1.20610 0.95028 0.94533 1.01257 1.19742 0.92416 0.82441 1.13565 1.98318 1.98923 1.11762 1.97477 1.21550 0.89673 0.97343 1.05155 1.18035 0.91179 0.80453 0.88682 0.92379 1.86479 1.23800 1.76399 1.51606 1.22371 1.48475 1.00116 0.96386 0.93148 1.25782 0.93019 0.93957 1.04630 1.70653 1.38383 1.39395 1.04359 0.83621 0.76461 0.76235 0.74393 1.21372 1.21503 1.20750 0.91251 0.92012 0.88940 0.85166 0.85464 0.85357 0.80024 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 10.05 36.01 0.36 -0.96 16 2 C 0.05 0.96 7.08 -81.78 -0.58 0.38 16 3 N -0.59 -9.71 6.07 -6.93 -0.04 -9.75 16 4 H 0.41 5.45 8.96 -40.82 -0.37 5.08 16 5 C 0.10 1.81 7.07 -83.94 -0.59 1.22 16 6 C -0.08 -1.57 6.22 -105.14 -0.65 -2.22 16 7 C -0.05 -0.83 9.61 -39.64 -0.38 -1.21 16 8 C -0.15 -2.25 9.97 -39.95 -0.40 -2.65 16 9 C -0.09 -1.36 9.80 -39.51 -0.39 -1.74 16 10 C -0.05 -0.82 6.34 -39.36 -0.25 -1.07 16 11 Cl -0.09 -1.24 28.97 -51.86 -1.50 -2.75 16 12 C -0.13 -2.83 5.19 -102.71 -0.53 -3.36 16 13 C 0.27 6.78 2.69 -29.04 -0.08 6.70 16 14 H 0.06 1.51 6.81 -51.93 -0.35 1.15 16 15 O -0.58 -14.46 11.97 -35.23 -0.42 -14.89 16 16 C -0.64 -17.17 8.69 -34.44 -0.30 -17.47 16 17 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 18 C 0.03 0.96 5.40 -17.82 -0.10 0.86 16 19 N -0.89 -26.33 13.53 55.43 0.75 -25.58 16 20 Si 1.06 24.54 29.90 -169.99 -5.08 19.46 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.55 7.11 -51.93 -0.37 1.19 16 27 H 0.13 2.28 6.51 -52.48 -0.34 1.93 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 30 H 0.35 8.10 6.85 45.56 0.31 8.41 16 31 H 0.28 8.49 6.47 -40.82 -0.26 8.23 16 LS Contribution 282.72 15.07 4.26 4.26 Total: -1.00 -30.68 282.72 -8.20 -38.88 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -2.28 Total: 11.88 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -3.89 Total: -21.52 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.71 Total: -35.33 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.42 Total: -14.89 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.46 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.68 -8.20 -38.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082334027.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.917 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds