Wall clock time and date at job start Mon Mar 30 2020 06:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36815 * 125.03043 * 2 1 4 4 H 0.96998 * 125.06600 * 0.02562 * 3 2 1 5 5 C 1.37728 * 109.86496 * 179.97438 * 3 2 1 6 6 C 1.40659 * 107.15795 * 0.02562 * 5 3 2 7 7 C 1.39620 * 119.94267 * 180.02562 * 6 5 3 8 8 C 1.36656 * 119.78490 * 359.68333 * 7 6 5 9 9 C 1.38790 * 120.53390 * 0.59329 * 8 7 6 10 10 C 1.37888 * 120.65240 * 359.41854 * 9 8 7 11 11 Cl 1.73599 * 120.12353 * 180.29464 * 10 9 8 12 12 C 1.34234 * 125.03130 * 179.97438 * 2 1 3 13 13 C 1.50696 * 126.50036 * 359.97438 * 12 2 1 14 14 H 1.09000 * 109.47114 * 14.31487 * 13 12 2 15 15 O 1.42903 * 109.47302 * 134.31698 * 13 12 2 16 16 C 1.50701 * 109.47086 * 254.31324 * 13 12 2 17 17 H 1.07996 * 120.00009 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99791 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00236 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99822 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.46670 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47058 * 120.00162 * 20 18 16 23 23 H 1.48500 * 109.47018 * 240.00053 * 20 18 16 24 24 H 1.08997 * 109.46751 * 85.57731 * 1 2 3 25 25 H 1.08997 * 109.46964 * 205.57715 * 1 2 3 26 26 H 1.08996 * 109.47397 * 325.57951 * 1 2 3 27 27 H 1.08003 * 120.11163 * 180.02562 * 7 6 5 28 28 H 1.08000 * 119.73464 * 180.28746 * 8 7 6 29 29 H 1.07999 * 119.67122 * 179.69753 * 9 8 7 30 30 H 0.96696 * 114.00064 * 66.03979 * 15 13 12 31 31 H 0.96998 * 119.99963 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1203 0.0000 4 1 1.9622 2.0324 0.0004 5 6 3.6217 0.7600 0.0006 6 6 3.6706 -0.6457 0.0004 7 6 4.9039 -1.3001 0.0014 8 6 6.0595 -0.5706 -0.0040 9 6 6.0176 0.8166 0.0020 10 6 4.8107 1.4835 0.0013 11 17 4.7744 3.2191 0.0011 12 6 2.2776 -1.0992 0.0005 13 6 1.8002 -2.5285 0.0017 14 1 0.7405 -2.5579 -0.2520 15 8 2.5417 -3.2792 -0.9620 16 6 2.0060 -3.1257 1.3699 17 1 2.4387 -2.5297 2.1597 18 6 1.6407 -4.4327 1.6137 19 7 1.1133 -5.1584 0.6520 20 14 1.8951 -5.1728 3.3099 21 1 2.5002 -4.1563 4.2077 22 1 0.5864 -5.6046 3.8629 23 1 2.8005 -6.3455 3.2077 24 1 -0.3633 0.0792 -1.0246 25 1 -0.3633 -0.9269 0.4437 26 1 -0.3634 0.8477 0.5809 27 1 4.9447 -2.3794 0.0008 28 1 7.0131 -1.0777 -0.0079 29 1 6.9394 1.3793 0.0026 30 1 3.4802 -3.3741 -0.7492 31 1 0.8560 -6.0778 0.8236 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082334029.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:10 Heat of formation + Delta-G solvation = -30.354241 kcal Electronic energy + Delta-G solvation = -17638.847131 eV Core-core repulsion = 14717.181647 eV Total energy + Delta-G solvation = -2921.665484 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.27749 -38.36376 -37.46865 -37.23311 -34.21202 -32.98911 -31.82207 -30.53403 -28.78154 -27.44862 -24.64641 -23.25965 -22.30838 -20.31488 -18.98191 -18.68712 -17.46252 -16.66982 -16.22668 -16.16864 -15.84173 -15.45459 -15.13720 -14.58274 -14.53321 -14.11060 -13.58384 -13.32747 -13.16585 -13.05822 -12.83838 -12.81515 -12.52858 -12.18766 -12.13164 -12.07212 -11.90821 -11.11041 -10.73373 -10.33080 -10.15047 -9.09456 -8.47399 -8.04717 -6.33633 0.05581 0.63795 1.13015 1.40092 1.42311 1.53894 1.74136 2.14997 2.43176 2.89157 3.15563 3.80126 3.98748 4.04425 4.28194 4.34664 4.44963 4.54540 4.58884 4.74741 4.86354 4.98272 5.04206 5.13918 5.34585 5.56253 5.67623 5.74214 5.81122 5.93619 6.14582 6.22698 6.69565 6.76863 7.35904 7.54716 8.94035 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.006261 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.994511 B = 4470.921322 C = 4932.559303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.065 3.935 3 N -0.579 5.579 4 H 0.424 0.576 5 C 0.087 3.913 6 C -0.107 4.107 7 C -0.075 4.075 8 C -0.138 4.138 9 C -0.090 4.090 10 C -0.057 4.057 11 Cl -0.071 7.071 12 C -0.187 4.187 13 C 0.296 3.704 14 H 0.038 0.962 15 O -0.577 6.577 16 C -0.561 4.561 17 H 0.047 0.953 18 C 0.031 3.969 19 N -0.898 5.898 20 Si 0.953 3.047 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.353 0.647 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.284 13.907 -0.682 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 N -0.184 5.184 4 H 0.263 0.737 5 C -0.021 4.021 6 C -0.112 4.112 7 C -0.093 4.093 8 C -0.157 4.157 9 C -0.109 4.109 10 C -0.086 4.086 11 Cl -0.043 7.043 12 C -0.194 4.194 13 C 0.238 3.762 14 H 0.056 0.944 15 O -0.382 6.382 16 C -0.599 4.599 17 H 0.065 0.935 18 C -0.172 4.172 19 N -0.536 5.536 20 Si 0.778 3.222 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.140 0.860 28 H 0.178 0.822 29 H 0.180 0.820 30 H 0.198 0.802 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.502 13.982 -1.027 15.061 hybrid contribution 0.185 -0.111 1.101 1.122 sum 5.686 13.871 0.074 14.992 Atomic orbital electron populations 1.20475 0.85906 1.04151 1.03750 1.20393 0.94617 0.84870 1.04275 1.41479 1.02940 1.08298 1.65721 0.73682 1.17974 0.84943 0.93388 1.05845 1.19287 0.94068 0.91637 1.06208 1.20652 0.90958 1.00377 0.97357 1.20861 0.98570 0.93063 1.03210 1.21049 0.95856 0.94525 0.99466 1.19925 0.92100 0.83747 1.12856 1.98323 1.98896 1.09700 1.97355 1.21487 0.91538 0.96868 1.09491 1.17559 0.90418 0.81290 0.86933 0.94447 1.86476 1.23576 1.77073 1.51044 1.21810 1.43285 0.97490 0.97359 0.93509 1.25796 0.93790 0.97547 1.00020 1.70195 1.41023 1.08842 1.33508 0.85603 0.78012 0.78327 0.80209 1.19520 1.20298 1.20263 0.89516 0.91005 0.88859 0.85995 0.82230 0.82007 0.80180 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.54 10.05 71.24 0.72 -1.82 16 2 C 0.07 2.40 7.08 40.87 0.29 2.69 16 3 N -0.58 -18.26 6.07 -175.85 -1.07 -19.33 16 4 H 0.42 10.37 8.96 -92.71 -0.83 9.53 16 5 C 0.09 3.01 7.07 39.04 0.28 3.29 16 6 C -0.11 -4.28 6.22 -20.20 -0.13 -4.40 16 7 C -0.07 -2.65 9.62 22.23 0.21 -2.44 16 8 C -0.14 -3.75 9.97 22.03 0.22 -3.53 16 9 C -0.09 -2.28 9.80 22.32 0.22 -2.06 16 10 C -0.06 -1.65 6.33 22.41 0.14 -1.50 16 11 Cl -0.07 -1.69 28.97 -2.72 -0.08 -1.77 16 12 C -0.19 -8.30 5.19 -18.63 -0.10 -8.40 16 13 C 0.30 15.44 3.09 29.10 0.09 15.53 16 14 H 0.04 2.12 6.93 -2.39 -0.02 2.10 16 15 O -0.58 -31.04 12.69 -148.98 -1.89 -32.93 16 16 C -0.56 -31.02 8.69 25.60 0.22 -30.80 16 17 H 0.05 2.63 7.74 -2.91 -0.02 2.60 16 18 C 0.03 1.70 5.40 84.66 0.46 2.16 16 19 N -0.90 -52.75 12.84 21.45 0.28 -52.48 16 20 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.07 2.47 7.10 -2.39 -0.02 2.46 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.12 4.38 6.51 -2.91 -0.02 4.37 16 28 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.35 17.26 6.85 -74.06 -0.51 16.75 16 31 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -66.68 284.74 1.74 -64.94 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.15 Total: 27.50 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 2.62 Total: -31.29 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -0.79 Total: -71.81 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.89 Total: -32.93 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -66.68 1.74 -64.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082334029.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.583 kcal (2) G-P(sol) polarization free energy of solvation -66.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds