Wall clock time and date at job start Mon Mar 30 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86801 * 120.00193 * 2 1 4 4 H 1.48496 * 109.47419 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47057 * 300.00368 * 3 2 1 6 6 H 1.48501 * 109.46843 * 60.00144 * 3 2 1 7 7 C 1.40080 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.40043 * 119.99761 * 359.97438 * 7 2 1 10 10 S 1.76219 * 126.25377 * 0.02562 * 9 7 2 11 11 C 1.70880 * 90.44688 * 179.97438 * 10 9 7 12 12 C 1.50701 * 124.56176 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.82565 * 164.45903 * 12 11 10 14 14 C 1.54377 * 109.91199 * 285.40051 * 12 11 10 15 15 C 1.55300 * 102.25502 * 140.90897 * 14 12 11 16 16 C 1.54940 * 100.94415 * 325.86750 * 15 14 12 17 17 O 1.43245 * 109.82851 * 43.57788 * 12 11 10 18 18 N 1.29523 * 110.88050 * 0.26897 * 11 10 9 19 19 C 1.30677 * 117.62737 * 359.49671 * 18 11 10 20 20 C 1.50703 * 123.22479 * 180.28869 * 19 18 11 21 21 C 1.52998 * 117.50122 * 8.86732 * 20 19 18 22 22 C 1.52996 * 59.99966 * 252.51457 * 21 20 19 23 23 H 0.97002 * 119.99847 * 359.97438 * 1 2 3 24 24 H 1.09006 * 110.84785 * 259.10628 * 14 12 11 25 25 H 1.09004 * 110.84470 * 22.51348 * 14 12 11 26 26 H 1.09007 * 111.12449 * 83.79023 * 15 14 12 27 27 H 1.09003 * 111.12579 * 207.90506 * 15 14 12 28 28 H 1.08997 * 110.31031 * 277.52940 * 16 15 14 29 29 H 1.08999 * 110.30948 * 155.35829 * 16 15 14 30 30 H 1.09000 * 115.54959 * 154.58365 * 20 19 18 31 31 H 1.09001 * 117.49333 * 0.02562 * 21 20 19 32 32 H 1.08993 * 117.49891 * 145.02243 * 21 20 19 33 33 H 1.08998 * 117.50091 * 252.50662 * 22 21 20 34 34 H 1.09006 * 117.50069 * 107.48926 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7026 1.3464 -0.0006 5 1 1.8838 2.3964 -1.2124 6 1 1.8839 2.3964 1.2125 7 6 2.0090 -1.2131 -0.0005 8 1 3.0889 -1.2130 -0.0010 9 6 1.3087 -2.4259 -0.0005 10 16 -0.4430 -2.6178 -0.0005 11 6 -0.2702 -4.3178 -0.0013 12 6 -1.4184 -5.2939 -0.0011 13 1 -1.0603 -6.2859 -0.2764 14 6 -2.0679 -5.3413 1.3985 15 6 -3.5793 -5.4467 1.0572 16 6 -3.6492 -4.5942 -0.2347 17 8 -2.4213 -4.8644 -0.9294 18 7 0.9805 -4.6547 0.0042 19 6 1.8667 -3.6944 -0.0010 20 6 3.3532 -3.9427 -0.0020 21 6 3.8289 -5.3824 -0.2059 22 6 3.9389 -4.7284 1.1728 23 1 -0.4850 0.8401 0.0004 24 1 -1.7331 -6.2186 1.9521 25 1 -1.8556 -4.4289 1.9558 26 1 -3.8669 -6.4799 0.8621 27 1 -4.1918 -5.0136 1.8480 28 1 -3.7179 -3.5352 0.0141 29 1 -4.5020 -4.8970 -0.8422 30 1 3.9626 -3.1457 -0.4282 31 1 3.0667 -6.1501 -0.3397 32 1 4.7514 -5.5330 -0.7666 33 1 4.9338 -4.4488 1.5193 34 1 3.2491 -5.0658 1.9465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082436394.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:22 Heat of formation + Delta-G solvation = -9.217679 kcal Electronic energy + Delta-G solvation = -17797.500391 eV Core-core repulsion = 15014.628258 eV Total energy + Delta-G solvation = -2782.872133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.90369 -37.91866 -35.19254 -34.25553 -31.64149 -30.27158 -28.66021 -25.40360 -23.07774 -22.25912 -21.50959 -21.26915 -19.96187 -18.73205 -17.13794 -16.14312 -15.82755 -15.43183 -15.06648 -14.50151 -13.85338 -13.36462 -13.27305 -12.99531 -12.51107 -12.36121 -11.88957 -11.60071 -11.45816 -11.26385 -11.00472 -10.88484 -10.74558 -10.65675 -10.56706 -10.39318 -9.84979 -9.73587 -9.56190 -9.09396 -9.06103 -7.83798 -7.74748 -7.05038 -6.97432 -4.57801 2.44868 2.88170 2.95175 3.00629 3.43916 3.62678 3.99131 4.03067 4.55316 4.67750 4.94457 5.18652 5.21557 5.25628 5.62490 5.69748 5.73582 5.88774 5.98653 6.01056 6.04736 6.19013 6.22443 6.34314 6.36271 6.52568 6.64832 6.72122 6.76728 6.97342 7.10720 7.28585 7.59440 7.70695 7.92905 8.31322 8.34036 9.72791 9.77528 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.008184 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.955359 B = 3420.543791 C = 4855.587360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.048 3.952 3 Si 0.935 3.065 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.363 4.363 8 H 0.099 0.901 9 C 0.002 3.998 10 S 0.147 5.853 11 C -0.195 4.195 12 C 0.191 3.809 13 H 0.078 0.922 14 C -0.143 4.143 15 C -0.157 4.157 16 C 0.050 3.950 17 O -0.374 6.374 18 N -0.419 5.419 19 C -0.114 4.114 20 C -0.023 4.023 21 C -0.181 4.181 22 C -0.186 4.186 23 H 0.297 0.703 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 -2.041 2.274 4.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.174 4.174 3 Si 0.758 3.242 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.400 4.400 8 H 0.117 0.883 9 C -0.122 4.122 10 S 0.400 5.600 11 C -0.463 4.463 12 C 0.130 3.870 13 H 0.095 0.905 14 C -0.181 4.181 15 C -0.194 4.194 16 C -0.027 4.027 17 O -0.292 6.292 18 N -0.132 5.132 19 C -0.250 4.250 20 C -0.043 4.043 21 C -0.218 4.218 22 C -0.224 4.224 23 H 0.110 0.890 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.859 -1.912 2.050 4.770 hybrid contribution 1.245 0.558 0.254 1.388 sum -2.614 -1.353 2.305 3.738 Atomic orbital electron populations 1.69012 1.07680 1.30715 1.32405 1.26249 0.95198 1.02766 0.93207 0.85765 0.80553 0.78911 0.78959 1.17917 1.19348 1.19369 1.19231 0.95535 0.88423 1.36827 0.88296 1.23089 0.94902 0.96531 0.97693 1.83985 1.05013 0.98065 1.72954 1.25881 0.94010 0.99573 1.26831 1.20359 0.85050 0.94416 0.87157 0.90451 1.23181 0.93735 1.03190 0.98031 1.23257 0.97180 1.00674 0.98326 1.23301 0.87934 0.98863 0.92633 1.88476 1.20150 1.87842 1.32747 1.64776 1.00286 1.38187 1.09956 1.18890 0.92562 0.86743 1.26768 1.19836 0.91041 0.93054 1.00385 1.22795 1.01727 0.97968 0.99321 1.22876 1.00815 1.06595 0.92131 0.89042 0.90646 0.90213 0.90890 0.90449 0.92333 0.90446 0.88355 0.88683 0.90412 0.90255 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.36 10.76 55.56 0.60 -17.76 16 2 C 0.05 1.10 5.50 -17.28 -0.09 1.01 16 3 Si 0.93 17.18 29.56 -169.99 -5.03 12.16 16 4 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 6 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.36 -9.04 8.99 -38.21 -0.34 -9.39 16 8 H 0.10 2.32 6.99 -52.49 -0.37 1.96 16 9 C 0.00 0.04 6.25 -38.78 -0.24 -0.20 16 10 S 0.15 3.72 20.03 -107.50 -2.15 1.56 16 11 C -0.19 -4.79 6.20 -13.25 -0.08 -4.88 16 12 C 0.19 3.96 4.04 -27.16 -0.11 3.85 16 13 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 14 C -0.14 -2.44 6.54 -24.79 -0.16 -2.60 16 15 C -0.16 -2.16 7.15 -24.49 -0.18 -2.33 16 16 C 0.05 0.79 7.78 38.18 0.30 1.08 16 17 O -0.37 -7.67 10.82 -35.23 -0.38 -8.05 16 18 N -0.42 -10.84 9.81 -7.08 -0.07 -10.91 16 19 C -0.11 -2.95 6.52 -82.95 -0.54 -3.49 16 20 C -0.02 -0.50 5.78 -91.77 -0.53 -1.03 16 21 C -0.18 -3.52 10.09 -26.73 -0.27 -3.79 16 22 C -0.19 -3.62 10.23 -26.74 -0.27 -3.89 16 23 H 0.30 6.31 8.30 -40.82 -0.34 5.97 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.08 1.47 7.84 -51.93 -0.41 1.07 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.10 2.08 7.37 -51.93 -0.38 1.70 16 31 H 0.09 1.99 7.76 -51.93 -0.40 1.58 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 LS Contribution 298.92 15.07 4.50 4.50 Total: -1.00 -28.34 298.92 -9.55 -37.89 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.50 Total: 6.25 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: -2.53 Total: -25.65 kcal Atomic # 7 Polarization: -29.20 SS G_CDS: 0.53 Total: -28.67 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.38 Total: -8.05 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.16 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -2.15 Total: 1.56 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.34 -9.55 -37.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082436394.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.672 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds