Wall clock time and date at job start Mon Mar 30 2020 06:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86801 * 120.00193 * 2 1 4 4 H 1.48496 * 109.47419 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47057 * 300.00368 * 3 2 1 6 6 H 1.48501 * 109.46843 * 60.00144 * 3 2 1 7 7 C 1.40080 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.40043 * 119.99761 * 359.97438 * 7 2 1 10 10 S 1.76219 * 126.25377 * 0.02562 * 9 7 2 11 11 C 1.70880 * 90.44688 * 179.97438 * 10 9 7 12 12 C 1.50701 * 124.56176 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.82565 * 164.45903 * 12 11 10 14 14 C 1.54377 * 109.91199 * 285.40051 * 12 11 10 15 15 C 1.55300 * 102.25502 * 140.90897 * 14 12 11 16 16 C 1.54940 * 100.94415 * 325.86750 * 15 14 12 17 17 O 1.43245 * 109.82851 * 43.57788 * 12 11 10 18 18 N 1.29523 * 110.88050 * 0.26897 * 11 10 9 19 19 C 1.30677 * 117.62737 * 359.49671 * 18 11 10 20 20 C 1.50703 * 123.22479 * 180.28869 * 19 18 11 21 21 C 1.52998 * 117.50122 * 8.86732 * 20 19 18 22 22 C 1.52996 * 59.99966 * 252.51457 * 21 20 19 23 23 H 0.97002 * 119.99847 * 359.97438 * 1 2 3 24 24 H 1.09006 * 110.84785 * 259.10628 * 14 12 11 25 25 H 1.09004 * 110.84470 * 22.51348 * 14 12 11 26 26 H 1.09007 * 111.12449 * 83.79023 * 15 14 12 27 27 H 1.09003 * 111.12579 * 207.90506 * 15 14 12 28 28 H 1.08997 * 110.31031 * 277.52940 * 16 15 14 29 29 H 1.08999 * 110.30948 * 155.35829 * 16 15 14 30 30 H 1.09000 * 115.54959 * 154.58365 * 20 19 18 31 31 H 1.09001 * 117.49333 * 0.02562 * 21 20 19 32 32 H 1.08993 * 117.49891 * 145.02243 * 21 20 19 33 33 H 1.08998 * 117.50091 * 252.50662 * 22 21 20 34 34 H 1.09006 * 117.50069 * 107.48926 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7026 1.3464 -0.0006 5 1 1.8838 2.3964 -1.2124 6 1 1.8839 2.3964 1.2125 7 6 2.0090 -1.2131 -0.0005 8 1 3.0889 -1.2130 -0.0010 9 6 1.3087 -2.4259 -0.0005 10 16 -0.4430 -2.6178 -0.0005 11 6 -0.2702 -4.3178 -0.0013 12 6 -1.4184 -5.2939 -0.0011 13 1 -1.0603 -6.2859 -0.2764 14 6 -2.0679 -5.3413 1.3985 15 6 -3.5793 -5.4467 1.0572 16 6 -3.6492 -4.5942 -0.2347 17 8 -2.4213 -4.8644 -0.9294 18 7 0.9805 -4.6547 0.0042 19 6 1.8667 -3.6944 -0.0010 20 6 3.3532 -3.9427 -0.0020 21 6 3.8289 -5.3824 -0.2059 22 6 3.9389 -4.7284 1.1728 23 1 -0.4850 0.8401 0.0004 24 1 -1.7331 -6.2186 1.9521 25 1 -1.8556 -4.4289 1.9558 26 1 -3.8669 -6.4799 0.8621 27 1 -4.1918 -5.0136 1.8480 28 1 -3.7179 -3.5352 0.0141 29 1 -4.5020 -4.8970 -0.8422 30 1 3.9626 -3.1457 -0.4282 31 1 3.0667 -6.1501 -0.3397 32 1 4.7514 -5.5330 -0.7666 33 1 4.9338 -4.4488 1.5193 34 1 3.2491 -5.0658 1.9465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082436394.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:21 Heat of formation + Delta-G solvation = -25.435606 kcal Electronic energy + Delta-G solvation = -17798.203653 eV Core-core repulsion = 15014.628258 eV Total energy + Delta-G solvation = -2783.575395 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43734 -39.65307 -36.87076 -36.07082 -33.03605 -31.97429 -30.30514 -27.13295 -24.84145 -23.88413 -23.06626 -22.54430 -21.63080 -20.57828 -18.92098 -17.76277 -17.45983 -17.00929 -16.60825 -16.06142 -15.43076 -15.02039 -14.81959 -14.58713 -14.18581 -13.88375 -13.60381 -13.16579 -13.02914 -12.76996 -12.63922 -12.28393 -12.25193 -12.12073 -12.01270 -11.73882 -11.51946 -11.44095 -11.22927 -10.85548 -10.62308 -9.73856 -9.67042 -8.90808 -8.83240 -6.45927 0.63479 1.36418 1.49247 1.52376 1.55978 2.00810 2.19257 2.24546 2.91835 3.08818 3.48395 3.66296 3.75861 3.98355 4.11738 4.23048 4.24640 4.40528 4.45023 4.62410 4.82170 4.83105 4.86602 4.88440 4.95313 4.96989 5.02466 5.10130 5.27858 5.32527 5.42329 5.51483 5.82123 6.05240 6.17153 6.45280 6.47978 7.85411 8.00144 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.008184 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.955359 B = 3420.543791 C = 4855.587360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.010 3.990 3 Si 1.011 2.989 4 H -0.250 1.250 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.384 4.384 8 H 0.107 0.893 9 C -0.033 4.033 10 S 0.123 5.877 11 C -0.203 4.203 12 C 0.187 3.813 13 H 0.073 0.927 14 C -0.139 4.139 15 C -0.139 4.139 16 C 0.038 3.962 17 O -0.400 6.400 18 N -0.438 5.438 19 C -0.140 4.140 20 C -0.054 4.054 21 C -0.165 4.165 22 C -0.169 4.169 23 H 0.308 0.692 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 -1.688 2.780 4.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.210 4.210 3 Si 0.829 3.171 4 H -0.172 1.172 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.421 4.421 8 H 0.125 0.875 9 C -0.156 4.156 10 S 0.376 5.624 11 C -0.472 4.472 12 C 0.126 3.874 13 H 0.091 0.909 14 C -0.178 4.178 15 C -0.176 4.176 16 C -0.038 4.038 17 O -0.319 6.319 18 N -0.151 5.151 19 C -0.275 4.275 20 C -0.074 4.074 21 C -0.202 4.202 22 C -0.206 4.206 23 H 0.121 0.879 24 H 0.110 0.890 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.629 -1.581 2.559 4.713 hybrid contribution 1.099 0.446 0.070 1.188 sum -2.530 -1.135 2.629 3.821 Atomic orbital electron populations 1.69050 1.09151 1.32340 1.31769 1.27269 0.95953 1.05882 0.91857 0.84675 0.79232 0.73873 0.79319 1.17248 1.18605 1.18406 1.19583 0.96120 0.88954 1.37464 0.87546 1.23515 0.95352 0.97711 0.99038 1.83808 1.05495 0.99292 1.73835 1.26605 0.94860 0.99920 1.25782 1.20462 0.84580 0.92920 0.89436 0.90922 1.23111 0.96121 1.02908 0.95619 1.23239 0.94765 1.01880 0.97702 1.23601 0.87012 0.98945 0.94203 1.88433 1.21641 1.87882 1.33922 1.64869 1.00838 1.38473 1.10956 1.19482 0.94352 0.86639 1.27001 1.19929 0.89371 0.94788 1.03344 1.22805 1.02215 0.95518 0.99703 1.22883 1.01649 1.04814 0.91271 0.87916 0.89034 0.92232 0.88483 0.87813 0.93404 0.87422 0.87882 0.90628 0.87103 0.86902 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.30 10.76 21.86 0.24 -38.06 16 2 C 0.01 0.44 5.50 85.29 0.47 0.91 16 3 Si 1.01 34.30 29.56 68.60 2.03 36.33 16 4 H -0.25 -8.15 7.11 99.48 0.71 -7.44 16 5 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 6 H -0.26 -8.40 7.11 99.48 0.71 -7.70 16 7 C -0.38 -19.50 8.99 23.16 0.21 -19.29 16 8 H 0.11 5.05 6.99 -2.91 -0.02 5.03 16 9 C -0.03 -1.79 6.25 22.79 0.14 -1.65 16 10 S 0.12 6.47 20.03 -56.49 -1.13 5.34 16 11 C -0.20 -10.34 6.20 88.45 0.55 -9.79 16 12 C 0.19 7.88 4.04 30.32 0.12 8.00 16 13 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 14 C -0.14 -4.67 6.54 31.85 0.21 -4.46 16 15 C -0.14 -3.48 7.15 32.05 0.23 -3.25 16 16 C 0.04 1.17 7.78 72.65 0.56 1.74 16 17 O -0.40 -16.51 10.82 -148.98 -1.61 -18.12 16 18 N -0.44 -23.48 9.81 -176.30 -1.73 -25.21 16 19 C -0.14 -7.46 6.52 42.81 0.28 -7.18 16 20 C -0.05 -2.39 5.78 -11.54 -0.07 -2.46 16 21 C -0.17 -6.28 10.09 30.59 0.31 -5.97 16 22 C -0.17 -6.37 10.23 30.59 0.31 -6.05 16 23 H 0.31 13.07 8.30 -92.71 -0.77 12.30 16 24 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 25 H 0.06 2.23 7.84 -2.39 -0.02 2.21 16 26 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.10 4.37 7.37 -2.39 -0.02 4.35 16 31 H 0.08 3.17 7.76 -2.39 -0.02 3.15 16 32 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.11 3.47 8.14 -2.39 -0.02 3.46 16 34 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 Total: -1.00 -63.77 298.92 2.22 -61.55 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 1.10 Total: 27.63 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 3.33 Total: -49.46 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -1.49 Total: -63.27 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.61 Total: -18.12 kcal Atomic # 14 Polarization: 34.30 SS G_CDS: 2.03 Total: 36.33 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.13 Total: 5.34 kcal Total: -63.77 2.22 -61.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082436394.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.115 kcal (2) G-P(sol) polarization free energy of solvation -63.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds