Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86802 * 120.00219 * 2 1 4 4 H 1.48498 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47218 * 299.99982 * 3 2 1 6 6 H 1.48504 * 109.46919 * 59.99863 * 3 2 1 7 7 C 1.40074 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99770 * 180.02562 * 7 2 1 9 9 C 1.40037 * 120.00302 * 359.97438 * 7 2 1 10 10 S 1.76224 * 126.25300 * 0.28038 * 9 7 2 11 11 C 1.70874 * 90.44847 * 180.02562 * 10 9 7 12 12 C 1.50706 * 124.56262 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.82372 * 195.26853 * 12 11 10 14 14 C 1.54384 * 109.82990 * 74.28585 * 12 11 10 15 15 C 1.55305 * 102.25131 * 219.13386 * 14 12 11 16 16 C 1.54944 * 100.94164 * 34.13288 * 15 14 12 17 17 O 1.43237 * 109.82662 * 316.15616 * 12 11 10 18 18 N 1.29528 * 110.87986 * 359.68963 * 11 10 9 19 19 C 1.30674 * 117.62668 * 0.24444 * 18 11 10 20 20 C 1.50704 * 123.22192 * 180.02562 * 19 18 11 21 21 C 1.53007 * 117.49619 * 8.72227 * 20 19 18 22 22 C 1.53002 * 117.49960 * 300.06400 * 20 19 18 23 23 H 0.97001 * 119.99551 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.84883 * 337.32230 * 14 12 11 25 25 H 1.08995 * 110.84681 * 100.94398 * 14 12 11 26 26 H 1.09001 * 111.12276 * 276.21457 * 15 14 12 27 27 H 1.09000 * 111.15820 * 152.06882 * 15 14 12 28 28 H 1.09004 * 110.30322 * 204.63950 * 16 15 14 29 29 H 1.09004 * 110.30766 * 82.47476 * 16 15 14 30 30 H 1.08993 * 115.55133 * 154.38939 * 20 19 18 31 31 H 1.08992 * 117.49744 * 0.02562 * 21 20 19 32 32 H 1.08999 * 117.49054 * 145.02107 * 21 20 19 33 33 H 1.08998 * 117.49799 * 214.98249 * 22 20 19 34 34 H 1.09002 * 117.49781 * 359.97107 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3463 0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8839 2.3964 1.2125 7 6 2.0089 -1.2131 -0.0005 8 1 3.0889 -1.2131 -0.0001 9 6 1.3088 -2.4259 -0.0005 10 16 -0.4430 -2.6178 -0.0069 11 6 -0.2701 -4.3178 -0.0017 12 6 -1.4184 -5.2939 -0.0030 13 1 -1.0602 -6.2863 0.2710 14 6 -2.0673 -5.3373 -1.4031 15 6 -3.5790 -5.4419 -1.0626 16 6 -3.6485 -4.5924 0.2313 17 8 -2.4212 -4.8656 0.9258 18 7 0.9806 -4.6547 -0.0024 19 6 1.8668 -3.6944 -0.0019 20 6 3.3532 -3.9426 -0.0033 21 6 3.8289 -5.3819 -0.2111 22 6 3.9389 -4.7310 1.1699 23 1 -0.4849 0.8401 -0.0004 24 1 -1.8568 -4.4222 -1.9567 25 1 -1.7332 -6.2135 -1.9585 26 1 -3.8676 -6.4752 -0.8702 27 1 -4.1912 -5.0061 -1.8521 28 1 -4.5020 -4.8959 0.8376 29 1 -3.7161 -3.5327 -0.0150 30 1 3.9627 -3.1449 -0.4278 31 1 3.0668 -6.1491 -0.3473 32 1 4.7515 -5.5308 -0.7721 33 1 4.9338 -4.4520 1.5171 34 1 3.2491 -5.0697 1.9430 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082436395.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = -25.444207 kcal Electronic energy + Delta-G solvation = -17794.484626 eV Core-core repulsion = 15010.908858 eV Total energy + Delta-G solvation = -2783.575768 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43766 -39.65214 -36.86728 -36.07102 -33.03512 -31.97414 -30.30473 -27.13298 -24.84174 -23.88255 -23.07374 -22.53696 -21.63528 -20.57846 -18.92063 -17.76327 -17.46071 -16.99880 -16.60022 -16.06562 -15.48659 -14.99378 -14.74384 -14.68203 -14.13895 -13.89369 -13.60220 -13.14720 -13.01263 -12.75335 -12.62904 -12.38329 -12.24948 -12.11392 -12.01049 -11.73602 -11.52248 -11.43681 -11.20278 -10.85476 -10.62555 -9.73902 -9.67155 -8.91049 -8.83258 -6.46016 0.63455 1.36423 1.49261 1.52354 1.55987 2.00819 2.19245 2.24130 2.90956 3.11720 3.45421 3.66344 3.76927 3.98659 4.11965 4.23222 4.24617 4.39651 4.46978 4.60305 4.82418 4.82882 4.86945 4.88666 4.95420 4.96869 5.02621 5.09830 5.28222 5.32485 5.42061 5.51728 5.82096 6.05249 6.17174 6.45233 6.47945 7.85432 8.00110 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.008179 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.053103 B = 3422.771390 C = 4861.173389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.010 3.990 3 Si 1.011 2.989 4 H -0.249 1.249 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.384 4.384 8 H 0.107 0.893 9 C -0.033 4.033 10 S 0.123 5.877 11 C -0.203 4.203 12 C 0.186 3.814 13 H 0.073 0.927 14 C -0.139 4.139 15 C -0.139 4.139 16 C 0.038 3.962 17 O -0.400 6.400 18 N -0.438 5.438 19 C -0.141 4.141 20 C -0.052 4.052 21 C -0.162 4.162 22 C -0.173 4.173 23 H 0.308 0.692 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 -1.678 -2.567 3.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.210 4.210 3 Si 0.829 3.171 4 H -0.172 1.172 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.421 4.421 8 H 0.125 0.875 9 C -0.156 4.156 10 S 0.376 5.624 11 C -0.472 4.472 12 C 0.126 3.874 13 H 0.091 0.909 14 C -0.177 4.177 15 C -0.176 4.176 16 C -0.038 4.038 17 O -0.319 6.319 18 N -0.151 5.151 19 C -0.275 4.275 20 C -0.073 4.073 21 C -0.199 4.199 22 C -0.211 4.211 23 H 0.121 0.879 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.611 -1.571 -2.349 4.585 hybrid contribution 1.092 0.447 -0.006 1.180 sum -2.519 -1.124 -2.356 3.627 Atomic orbital electron populations 1.69053 1.09151 1.32337 1.31769 1.27270 0.95954 1.05884 0.91856 0.84676 0.79235 0.73870 0.79318 1.17241 1.18363 1.18649 1.19582 0.96127 0.88953 1.37454 0.87536 1.23514 0.95348 0.97712 0.99032 1.83804 1.05505 0.99290 1.73837 1.26613 0.94859 0.99926 1.25776 1.20471 0.84572 0.92920 0.89452 0.90933 1.23113 0.96075 1.02944 0.95595 1.23243 0.94812 1.01883 0.97671 1.23605 0.87014 0.98948 0.94208 1.88431 1.21703 1.87867 1.33924 1.64872 1.00845 1.38478 1.10950 1.19482 0.94360 0.86643 1.27016 1.19933 0.89370 0.94817 1.03173 1.22817 1.02255 0.95497 0.99379 1.22897 1.01619 1.05160 0.91385 0.87918 0.92183 0.88953 0.88501 0.87801 0.87450 0.93405 0.87761 0.90551 0.86937 0.86893 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.29 10.76 21.86 0.24 -38.06 16 2 C 0.01 0.44 5.50 85.28 0.47 0.91 16 3 Si 1.01 34.29 29.56 68.60 2.03 36.31 16 4 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 5 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 6 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 7 C -0.38 -19.49 8.99 23.15 0.21 -19.29 16 8 H 0.11 5.05 6.99 -2.91 -0.02 5.03 16 9 C -0.03 -1.79 6.25 22.79 0.14 -1.64 16 10 S 0.12 6.47 20.04 -56.49 -1.13 5.33 16 11 C -0.20 -10.35 6.20 88.45 0.55 -9.80 16 12 C 0.19 7.87 4.05 30.32 0.12 8.00 16 13 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 14 C -0.14 -4.65 6.53 31.86 0.21 -4.44 16 15 C -0.14 -3.48 7.16 32.05 0.23 -3.25 16 16 C 0.04 1.17 7.78 72.65 0.56 1.73 16 17 O -0.40 -16.56 10.83 -148.98 -1.61 -18.17 16 18 N -0.44 -23.49 9.81 -176.30 -1.73 -25.22 16 19 C -0.14 -7.47 6.52 42.81 0.28 -7.20 16 20 C -0.05 -2.33 5.78 -11.54 -0.07 -2.39 16 21 C -0.16 -6.14 10.09 30.62 0.31 -5.83 16 22 C -0.17 -6.66 10.24 30.62 0.31 -6.35 16 23 H 0.31 13.06 8.30 -92.71 -0.77 12.29 16 24 H 0.06 2.24 7.84 -2.39 -0.02 2.22 16 25 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 26 H 0.10 2.01 8.14 -2.39 -0.02 2.00 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 29 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.10 4.39 7.37 -2.39 -0.02 4.37 16 31 H 0.08 3.17 7.76 -2.39 -0.02 3.16 16 32 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 34 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -63.84 298.92 2.22 -61.62 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 1.10 Total: 27.72 kcal Atomic # 6 Polarization: -52.87 SS G_CDS: 3.33 Total: -49.54 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -1.49 Total: -63.28 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -1.61 Total: -18.17 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 2.03 Total: 36.31 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.13 Total: 5.33 kcal Total: -63.84 2.22 -61.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082436395.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.180 kcal (2) G-P(sol) polarization free energy of solvation -63.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds