Wall clock time and date at job start Mon Mar 30 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00048 * 2 1 4 4 C 1.50700 * 109.47104 * 179.97438 * 3 2 1 5 5 N 1.29790 * 122.54263 * 89.97502 * 4 3 2 6 6 C 1.31237 * 117.53871 * 179.97438 * 5 4 3 7 7 C 1.46257 * 125.15210 * 179.97438 * 6 5 4 8 8 C 1.37967 * 126.10290 * 179.97438 * 7 6 5 9 9 C 1.40379 * 106.54491 * 179.97438 * 8 7 6 10 10 C 1.35136 * 107.20076 * 359.97438 * 9 8 7 11 11 O 1.34164 * 109.02022 * 359.73567 * 10 9 8 12 12 S 1.76089 * 109.69937 * 359.97438 * 6 5 4 13 13 C 1.38949 * 122.54070 * 269.94956 * 4 3 2 14 14 C 1.39675 * 126.08645 * 0.02562 * 13 4 3 15 15 H 1.07995 * 120.00109 * 0.02562 * 14 13 4 16 16 C 1.40013 * 120.00198 * 180.02562 * 14 13 4 17 17 N 1.30904 * 119.99663 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00192 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47439 * 59.99636 * 18 16 14 20 20 H 1.48500 * 109.46954 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46979 * 299.99179 * 18 16 14 22 22 H 1.08996 * 109.47313 * 300.00314 * 1 2 3 23 23 H 1.09000 * 109.46976 * 60.00687 * 1 2 3 24 24 H 1.09004 * 109.47053 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47325 * 59.99501 * 3 2 1 26 26 H 1.09003 * 109.46589 * 299.99413 * 3 2 1 27 27 H 1.08010 * 126.72804 * 0.03217 * 8 7 6 28 28 H 1.08004 * 126.40171 * 179.97438 * 9 8 7 29 29 H 1.07993 * 125.48817 * 180.02562 * 10 9 8 30 30 H 0.96997 * 120.00236 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2089 1.1307 -1.0932 6 6 5.5122 1.0280 -0.9782 7 6 6.4528 0.9524 -2.0956 8 6 7.8248 0.8448 -1.9975 9 6 8.3175 0.8034 -3.3113 10 6 7.2531 0.8848 -4.1400 11 8 6.1330 0.9681 -3.4062 12 16 5.9570 0.9951 0.7253 13 6 4.2572 1.1287 1.1723 14 6 3.7493 1.1698 2.4728 15 1 2.6848 1.2534 2.6344 16 6 4.6202 1.1025 3.5670 17 7 5.9105 1.0006 3.3712 18 14 3.9409 1.1567 5.3062 19 1 3.0166 0.0129 5.5125 20 1 5.0605 1.0693 6.2778 21 1 3.2056 2.4306 5.5109 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8901 27 1 8.4058 0.8001 -1.0881 28 1 9.3536 0.7218 -3.6050 29 1 7.2968 0.8787 -5.2191 30 1 6.5139 0.9537 4.1291 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082446580.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:20 Heat of formation + Delta-G solvation = -17.125108 kcal Electronic energy + Delta-G solvation = -17078.516564 eV Core-core repulsion = 14159.468444 eV Total energy + Delta-G solvation = -2919.048120 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.49179 -38.04207 -36.46870 -34.63055 -32.19131 -30.83495 -28.83167 -27.79413 -25.52953 -23.96394 -23.10244 -20.94621 -19.92310 -18.73693 -17.83747 -16.56550 -15.82409 -15.67124 -15.38297 -15.15107 -14.78240 -14.16412 -14.05880 -12.98167 -12.61843 -12.36246 -12.22418 -12.10287 -11.87425 -11.78437 -11.67290 -11.38748 -11.18050 -10.78665 -10.72417 -10.11383 -9.49911 -9.22518 -8.95237 -8.52548 -8.19446 -7.75712 -7.39524 -6.96734 -4.85719 1.82940 2.58978 2.72077 2.77871 2.92798 2.94968 3.32046 3.39775 3.57308 4.14755 4.21534 4.41292 5.13760 5.39619 5.65750 5.69291 5.73416 5.77209 6.00457 6.08730 6.12632 6.32444 6.40958 6.55840 6.61756 6.87221 6.92921 7.27118 7.36740 7.56692 7.83407 7.92891 7.96087 8.09026 9.37679 9.49150 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.007218 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.938209 B = 3878.348218 C = 5357.381585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.172 3.828 4 C -0.124 4.124 5 N -0.384 5.384 6 C -0.147 4.147 7 C 0.151 3.849 8 C -0.258 4.258 9 C -0.196 4.196 10 C -0.093 4.093 11 O -0.168 6.168 12 S 0.144 5.856 13 C 0.013 3.987 14 C -0.327 4.327 15 H 0.107 0.893 16 C 0.043 3.957 17 N -0.750 5.750 18 Si 0.945 3.055 19 H -0.256 1.256 20 H -0.269 1.269 21 H -0.256 1.256 22 H 0.034 0.966 23 H 0.032 0.968 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.190 0.810 30 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 0.608 0.485 1.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.094 3.906 4 C -0.265 4.265 5 N -0.097 5.097 6 C -0.405 4.405 7 C 0.096 3.904 8 C -0.280 4.280 9 C -0.215 4.215 10 C -0.161 4.161 11 O -0.064 6.064 12 S 0.396 5.604 13 C -0.112 4.112 14 C -0.364 4.364 15 H 0.125 0.875 16 C -0.182 4.182 17 N -0.375 5.375 18 Si 0.766 3.234 19 H -0.180 1.180 20 H -0.194 1.194 21 H -0.180 1.180 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.159 0.841 28 H 0.156 0.844 29 H 0.207 0.793 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.299 0.378 0.298 0.567 hybrid contribution -1.014 0.231 0.622 1.212 sum -1.313 0.610 0.920 1.716 Atomic orbital electron populations 1.22610 0.83114 1.01657 0.99104 1.88069 1.17694 1.29625 1.95132 1.20322 0.88355 0.83359 0.98591 1.19356 0.94093 1.26674 0.86423 1.65330 1.04969 1.06632 1.32754 1.23244 0.90994 1.31236 0.95074 1.19838 0.91562 0.99342 0.79622 1.21664 0.92501 1.15905 0.97922 1.21438 0.99122 1.07880 0.93060 1.23769 0.83620 1.11902 0.96852 1.84147 1.34121 1.70972 1.17139 1.84939 1.06300 1.74828 0.94308 1.23196 0.94694 0.96233 0.97055 1.19377 0.96377 1.32303 0.88369 0.87489 1.26452 0.94522 0.92954 1.04291 1.68918 1.03854 1.28464 1.36249 0.85684 0.79718 0.80778 0.77185 1.17954 1.19369 1.18013 0.94748 0.94931 0.90619 0.93200 0.94031 0.84118 0.84385 0.79316 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.39 -8.42 10.69 -35.23 -0.38 -8.79 16 3 C 0.17 3.78 6.07 36.01 0.22 4.00 16 4 C -0.12 -3.21 6.47 -83.19 -0.54 -3.75 16 5 N -0.38 -10.51 10.50 -6.94 -0.07 -10.58 16 6 C -0.15 -3.88 7.45 -14.59 -0.11 -3.99 16 7 C 0.15 3.63 7.27 -36.46 -0.27 3.37 16 8 C -0.26 -5.44 10.69 -38.88 -0.42 -5.85 16 9 C -0.20 -3.49 10.87 -39.88 -0.43 -3.92 16 10 C -0.09 -1.67 12.06 29.63 0.36 -1.31 16 11 O -0.17 -3.85 10.67 4.37 0.05 -3.80 16 12 S 0.14 3.60 20.19 -107.50 -2.17 1.43 16 13 C 0.01 0.33 6.24 -38.78 -0.24 0.09 16 14 C -0.33 -7.61 8.88 -38.38 -0.34 -7.95 16 15 H 0.11 2.30 6.86 -52.49 -0.36 1.94 16 16 C 0.04 0.91 5.50 -17.28 -0.09 0.82 16 17 N -0.75 -16.52 10.73 55.55 0.60 -15.92 16 18 Si 0.94 15.63 29.56 -169.99 -5.03 10.60 16 19 H -0.26 -4.22 7.11 56.52 0.40 -3.82 16 20 H -0.27 -4.31 7.11 56.52 0.40 -3.91 16 21 H -0.26 -4.15 7.11 56.52 0.40 -3.75 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 1.00 7.06 -51.93 -0.37 0.63 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.14 2.80 8.06 -52.48 -0.42 2.37 16 28 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16 29 H 0.19 2.47 8.06 -52.49 -0.42 2.05 16 30 H 0.31 5.97 8.30 -40.82 -0.34 5.63 16 LS Contribution 285.12 15.07 4.30 4.30 Total: -1.00 -29.54 285.12 -6.28 -35.81 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -2.82 Total: 3.84 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -0.75 Total: -16.88 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.52 Total: -26.50 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.33 Total: -12.59 kcal Atomic # 14 Polarization: 15.63 SS G_CDS: -5.03 Total: 10.60 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -2.17 Total: 1.43 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.54 -6.28 -35.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082446580.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.686 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds