Wall clock time and date at job start Mon Mar 30 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36003 * 117.00220 * 2 1 4 4 C 1.38040 * 119.86989 * 359.97438 * 3 2 1 5 5 C 1.39656 * 119.62289 * 180.02562 * 4 3 2 6 6 C 1.46507 * 133.92701 * 180.02562 * 5 4 3 7 7 C 1.50704 * 126.48612 * 359.97438 * 6 5 4 8 8 C 1.50702 * 109.47270 * 85.00276 * 7 6 5 9 9 H 1.08002 * 119.99582 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00135 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00211 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99931 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47148 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46939 * 120.00070 * 12 10 8 15 15 H 1.48498 * 109.47049 * 240.00057 * 12 10 8 16 16 C 1.34230 * 107.03050 * 179.97438 * 6 5 4 17 17 N 1.36838 * 109.93209 * 359.97438 * 16 6 5 18 18 H 0.97002 * 125.07477 * 179.97438 * 17 16 6 19 19 C 1.37896 * 109.85004 * 0.02562 * 17 16 6 20 20 C 1.39073 * 133.34965 * 179.97438 * 19 17 16 21 21 C 1.37808 * 119.98723 * 179.70634 * 20 19 17 22 22 Cl 1.73600 * 119.70785 * 180.31357 * 21 20 19 23 23 H 1.09001 * 109.47103 * 300.00585 * 1 2 3 24 24 H 1.09004 * 109.47054 * 60.00089 * 1 2 3 25 25 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.08008 * 120.18870 * 359.97438 * 4 3 2 27 27 H 1.09005 * 109.46995 * 205.00333 * 7 6 5 28 28 H 1.09001 * 109.46900 * 325.00087 * 7 6 5 29 29 H 0.96994 * 119.99759 * 180.02562 * 11 10 8 30 30 H 1.07997 * 125.03766 * 180.02562 * 16 6 5 31 31 H 1.08006 * 120.00979 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2921 2.3678 -0.0005 5 6 1.9316 3.6094 -0.0011 6 6 1.4589 4.9961 -0.0012 7 6 0.0229 5.4533 -0.0014 8 6 -0.4935 5.4880 1.4140 9 1 0.1537 5.2074 2.2319 10 6 -1.7916 5.8789 1.6650 11 7 -2.5792 6.2220 0.6692 12 14 -2.4317 5.9211 3.4194 13 1 -1.3561 5.4928 4.3492 14 1 -2.8569 7.3030 3.7580 15 1 -3.5910 5.0016 3.5456 16 6 2.5468 5.7823 -0.0013 17 7 3.6784 5.0129 -0.0006 18 1 4.5857 5.3560 -0.0008 19 6 3.3363 3.6770 -0.0006 20 6 4.0792 2.5013 -0.0005 21 6 3.4380 1.2815 0.0055 22 17 4.3725 -0.1815 0.0138 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2135 2.3124 -0.0014 27 1 -0.0407 6.4510 -0.4358 28 1 -0.5787 4.7613 -0.5908 29 1 -3.4923 6.4973 0.8458 30 1 2.5314 6.8622 -0.0010 31 1 5.1584 2.5442 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082606165.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:51 Heat of formation + Delta-G solvation = 5.406335 kcal Electronic energy + Delta-G solvation = -17239.700566 eV Core-core repulsion = 14319.585776 eV Total energy + Delta-G solvation = -2920.114789 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84419 -38.91322 -36.50649 -35.07050 -33.51743 -31.65561 -29.37735 -28.83726 -26.81889 -26.52462 -23.03295 -22.31592 -21.41221 -19.00067 -17.54631 -17.16826 -16.25006 -16.09341 -15.47048 -15.11356 -14.48052 -13.94507 -13.85910 -13.77368 -12.86153 -12.54313 -12.39037 -12.34898 -11.99994 -11.51156 -11.25069 -11.21091 -10.94558 -10.71281 -10.60382 -10.26258 -10.03216 -9.75091 -9.49843 -8.88025 -8.41158 -7.46251 -6.97543 -6.01536 -4.05420 1.28762 1.88155 2.36115 3.28766 3.29409 3.37542 3.43664 3.49023 3.68493 4.14903 4.46636 5.00071 5.19381 5.32189 5.43902 5.47113 5.49799 5.57155 5.74071 5.88774 5.94865 6.01576 6.36836 6.56762 6.65984 6.90486 7.27200 7.41240 7.58010 7.66459 7.83035 7.94249 8.02372 8.38221 9.00484 9.58505 11.07012 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021262 B = 0.005887 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.575957 B = 4755.427850 C = 5573.372727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.093 3.907 4 C -0.133 4.133 5 C -0.058 4.058 6 C -0.114 4.114 7 C 0.080 3.920 8 C -0.506 4.506 9 H 0.056 0.944 10 C 0.058 3.942 11 N -0.896 5.896 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.026 3.974 17 N -0.601 5.601 18 H 0.409 0.591 19 C 0.073 3.927 20 C -0.097 4.097 21 C -0.043 4.043 22 Cl -0.071 7.071 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.141 0.859 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.260 0.740 30 H 0.167 0.833 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.097 -7.636 -2.541 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.046 3.954 4 C -0.153 4.153 5 C -0.064 4.064 6 C -0.121 4.121 7 C 0.042 3.958 8 C -0.545 4.545 9 H 0.074 0.926 10 C -0.143 4.143 11 N -0.535 5.535 12 Si 0.718 3.282 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.097 4.097 17 N -0.206 5.206 18 H 0.245 0.755 19 C -0.034 4.034 20 C -0.118 4.118 21 C -0.071 4.071 22 Cl -0.043 7.043 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.114 0.886 26 H 0.159 0.841 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.185 0.815 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.172 -7.812 -2.574 13.874 hybrid contribution -0.169 0.324 1.033 1.096 sum 11.003 -7.488 -1.541 13.399 Atomic orbital electron populations 1.23049 0.78414 1.03399 1.02018 1.86070 1.21188 1.25951 1.89507 1.18180 0.89928 0.84895 1.02387 1.20600 1.00290 0.89641 1.04724 1.19090 0.91206 0.93754 1.02359 1.21231 0.97595 0.89100 1.04144 1.17727 0.84326 0.96430 0.97277 1.21164 0.96606 1.44372 0.92334 0.92586 1.24992 0.96922 0.95479 0.96942 1.69960 1.07206 1.45726 1.30650 0.86559 0.78884 0.77654 0.85109 1.19746 1.21007 1.20996 1.21652 0.84245 0.96671 1.07144 1.41589 1.08232 1.03450 1.67312 0.75509 1.17907 0.93986 0.84693 1.06808 1.19400 0.98841 0.87812 1.05795 1.19456 0.88327 0.87140 1.12158 1.98320 1.72707 1.35947 1.97301 0.92276 0.92528 0.88620 0.84133 0.95416 0.95510 0.92991 0.81532 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.02 9.93 -19.75 -0.20 -5.22 16 3 C 0.09 1.61 6.68 -39.25 -0.26 1.34 16 4 C -0.13 -2.51 9.08 -39.12 -0.36 -2.87 16 5 C -0.06 -1.16 6.35 -105.13 -0.67 -1.83 16 6 C -0.11 -2.43 5.50 -102.70 -0.57 -2.99 16 7 C 0.08 2.00 5.50 -29.03 -0.16 1.84 16 8 C -0.51 -13.87 9.09 -34.44 -0.31 -14.19 16 9 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16 12 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.03 0.45 11.73 -16.73 -0.20 0.26 16 17 N -0.60 -8.93 6.08 -10.62 -0.06 -9.00 16 18 H 0.41 4.39 8.96 -40.82 -0.37 4.02 16 19 C 0.07 1.25 7.27 -83.92 -0.61 0.64 16 20 C -0.10 -1.47 9.83 -39.43 -0.39 -1.86 16 21 C -0.04 -0.69 6.33 -39.33 -0.25 -0.94 16 22 Cl -0.07 -1.02 28.46 -51.86 -1.48 -2.50 16 23 H 0.06 0.78 7.65 -51.93 -0.40 0.38 16 24 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 25 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.14 2.65 6.27 -52.48 -0.33 2.32 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.17 2.48 8.06 -52.49 -0.42 2.05 16 31 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 288.38 15.07 4.35 4.35 Total: -1.00 -30.78 288.38 -7.69 -38.47 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -3.14 Total: 0.62 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.87 Total: -17.77 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.67 Total: -34.18 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.20 Total: -5.22 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.48 Total: -2.50 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.78 -7.69 -38.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082606165.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.875 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds