Wall clock time and date at job start Mon Mar 30 2020 06:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36003 * 117.00220 * 2 1 4 4 C 1.38040 * 119.86989 * 359.97438 * 3 2 1 5 5 C 1.39656 * 119.62289 * 180.02562 * 4 3 2 6 6 C 1.46507 * 133.92701 * 180.02562 * 5 4 3 7 7 C 1.50704 * 126.48612 * 359.97438 * 6 5 4 8 8 C 1.50702 * 109.47270 * 85.00276 * 7 6 5 9 9 H 1.08002 * 119.99582 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00135 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00211 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99931 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47148 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46939 * 120.00070 * 12 10 8 15 15 H 1.48498 * 109.47049 * 240.00057 * 12 10 8 16 16 C 1.34230 * 107.03050 * 179.97438 * 6 5 4 17 17 N 1.36838 * 109.93209 * 359.97438 * 16 6 5 18 18 H 0.97002 * 125.07477 * 179.97438 * 17 16 6 19 19 C 1.37896 * 109.85004 * 0.02562 * 17 16 6 20 20 C 1.39073 * 133.34965 * 179.97438 * 19 17 16 21 21 C 1.37808 * 119.98723 * 179.70634 * 20 19 17 22 22 Cl 1.73600 * 119.70785 * 180.31357 * 21 20 19 23 23 H 1.09001 * 109.47103 * 300.00585 * 1 2 3 24 24 H 1.09004 * 109.47054 * 60.00089 * 1 2 3 25 25 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.08008 * 120.18870 * 359.97438 * 4 3 2 27 27 H 1.09005 * 109.46995 * 205.00333 * 7 6 5 28 28 H 1.09001 * 109.46900 * 325.00087 * 7 6 5 29 29 H 0.96994 * 119.99759 * 180.02562 * 11 10 8 30 30 H 1.07997 * 125.03766 * 180.02562 * 16 6 5 31 31 H 1.08006 * 120.00979 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2921 2.3678 -0.0005 5 6 1.9316 3.6094 -0.0011 6 6 1.4589 4.9961 -0.0012 7 6 0.0229 5.4533 -0.0014 8 6 -0.4935 5.4880 1.4140 9 1 0.1537 5.2074 2.2319 10 6 -1.7916 5.8789 1.6650 11 7 -2.5792 6.2220 0.6692 12 14 -2.4317 5.9211 3.4194 13 1 -1.3561 5.4928 4.3492 14 1 -2.8569 7.3030 3.7580 15 1 -3.5910 5.0016 3.5456 16 6 2.5468 5.7823 -0.0013 17 7 3.6784 5.0129 -0.0006 18 1 4.5857 5.3560 -0.0008 19 6 3.3363 3.6770 -0.0006 20 6 4.0792 2.5013 -0.0005 21 6 3.4380 1.2815 0.0055 22 17 4.3725 -0.1815 0.0138 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2135 2.3124 -0.0014 27 1 -0.0407 6.4510 -0.4358 28 1 -0.5787 4.7613 -0.5908 29 1 -3.4923 6.4973 0.8458 30 1 2.5314 6.8622 -0.0010 31 1 5.1584 2.5442 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082606165.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:50 Heat of formation + Delta-G solvation = -12.840035 kcal Electronic energy + Delta-G solvation = -17240.491788 eV Core-core repulsion = 14319.585776 eV Total energy + Delta-G solvation = -2920.906011 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.19116 -40.18428 -37.71443 -36.35514 -35.45973 -33.32966 -30.94177 -30.09914 -28.44933 -27.83825 -24.98446 -23.62190 -22.73242 -20.44488 -18.90775 -18.54741 -18.32577 -17.41213 -16.69570 -16.45520 -16.35597 -15.30205 -15.10046 -15.07643 -14.34471 -14.14303 -13.92313 -13.87058 -13.62144 -13.06047 -12.83709 -12.54691 -12.47998 -12.38712 -12.03740 -11.84227 -11.56492 -11.45423 -11.28408 -10.55514 -10.36527 -8.79715 -8.45755 -8.07238 -6.25723 -0.03594 0.54037 1.12315 1.39490 1.40771 1.53230 1.86769 2.28410 2.43693 2.46206 2.77230 3.15951 3.72920 3.89233 4.17267 4.35633 4.38706 4.39528 4.51417 4.63422 4.71735 4.75740 4.95047 5.07314 5.24916 5.42317 5.47437 5.66970 5.81520 5.90276 6.14902 6.29966 6.38329 6.83882 6.88757 7.42463 8.94621 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021262 B = 0.005887 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.575957 B = 4755.427850 C = 5573.372727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.319 6.319 3 C 0.096 3.904 4 C -0.162 4.162 5 C -0.086 4.086 6 C -0.173 4.173 7 C 0.094 3.906 8 C -0.518 4.518 9 H 0.048 0.952 10 C 0.007 3.993 11 N -0.930 5.930 12 Si 0.956 3.044 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.279 1.279 16 C 0.059 3.941 17 N -0.576 5.576 18 H 0.434 0.566 19 C 0.068 3.932 20 C -0.076 4.076 21 C -0.055 4.055 22 Cl -0.051 7.051 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.129 0.871 26 H 0.124 0.876 27 H 0.009 0.991 28 H -0.007 1.007 29 H 0.264 0.736 30 H 0.195 0.805 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.328 -8.081 -1.691 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.233 6.233 3 C 0.049 3.951 4 C -0.181 4.181 5 C -0.092 4.092 6 C -0.180 4.180 7 C 0.056 3.944 8 C -0.556 4.556 9 H 0.066 0.934 10 C -0.191 4.191 11 N -0.571 5.571 12 Si 0.781 3.219 13 H -0.194 1.194 14 H -0.201 1.201 15 H -0.204 1.204 16 C -0.067 4.067 17 N -0.183 5.183 18 H 0.274 0.726 19 C -0.040 4.040 20 C -0.097 4.097 21 C -0.083 4.083 22 Cl -0.022 7.022 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.147 0.853 26 H 0.142 0.858 27 H 0.027 0.973 28 H 0.011 0.989 29 H 0.073 0.927 30 H 0.211 0.789 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.450 -8.268 -1.727 15.882 hybrid contribution -0.806 0.391 0.720 1.149 sum 12.644 -7.877 -1.007 14.931 Atomic orbital electron populations 1.23257 0.77035 1.05411 1.01536 1.86057 1.22627 1.25389 1.89202 1.18321 0.90679 0.84695 1.01398 1.20533 0.99826 0.90470 1.07308 1.19263 0.93070 0.93342 1.03536 1.20899 0.96512 0.91009 1.09580 1.17348 0.87046 0.94511 0.95479 1.21435 0.96885 1.43990 0.93273 0.93379 1.25814 0.97154 0.95070 1.01037 1.70075 1.07610 1.46622 1.32803 0.85530 0.78231 0.77987 0.80112 1.19357 1.20074 1.20442 1.21887 0.83917 0.97607 1.03265 1.41475 1.08856 1.02436 1.65505 0.72565 1.17997 0.92815 0.85980 1.07179 1.19745 1.00503 0.86498 1.02921 1.19647 0.88133 0.88446 1.12050 1.98326 1.71904 1.34810 1.97210 0.93164 0.92730 0.85252 0.85836 0.97266 0.98852 0.92740 0.78864 0.81397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.32 -10.08 9.93 -93.59 -0.93 -11.01 16 3 C 0.10 3.31 6.68 22.48 0.15 3.46 16 4 C -0.16 -6.35 9.08 22.57 0.20 -6.14 16 5 C -0.09 -3.50 6.35 -20.19 -0.13 -3.63 16 6 C -0.17 -7.53 5.50 -18.62 -0.10 -7.64 16 7 C 0.09 4.96 5.50 29.10 0.16 5.12 16 8 C -0.52 -29.35 9.09 25.60 0.23 -29.12 16 9 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 10 C 0.01 0.40 5.46 84.65 0.46 0.86 16 11 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 12 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 C 0.06 1.97 11.73 83.00 0.97 2.94 16 17 N -0.58 -15.47 6.08 -187.52 -1.14 -16.61 16 18 H 0.43 7.46 8.96 -92.71 -0.83 6.63 16 19 C 0.07 2.19 7.27 38.98 0.28 2.47 16 20 C -0.08 -2.07 9.83 22.37 0.22 -1.85 16 21 C -0.05 -1.66 6.33 22.43 0.14 -1.52 16 22 Cl -0.05 -1.34 28.46 -2.72 -0.08 -1.41 16 23 H 0.05 1.38 7.65 -2.39 -0.02 1.37 16 24 H 0.05 1.43 7.65 -2.38 -0.02 1.41 16 25 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.12 5.08 6.27 -2.91 -0.02 5.06 16 27 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 28 H -0.01 -0.40 8.14 -2.39 -0.02 -0.41 16 29 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.19 5.30 8.06 -2.91 -0.02 5.27 16 31 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -68.31 288.38 4.21 -64.10 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.34 Total: 7.27 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 3.71 Total: -33.36 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -0.86 Total: -71.79 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.93 Total: -11.01 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.41 kcal Total: -68.31 4.21 -64.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082606165.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.256 kcal (2) G-P(sol) polarization free energy of solvation -68.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds