Wall clock time and date at job start Mon Mar 30 2020 06:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35983 * 116.99797 * 2 1 4 4 C 1.38339 * 119.94390 * 0.02562 * 3 2 1 5 5 C 1.39187 * 119.66691 * 180.02562 * 4 3 2 6 6 C 1.47694 * 133.70239 * 180.02562 * 5 4 3 7 7 C 1.40876 * 126.92310 * 359.97438 * 6 5 4 8 8 H 1.08007 * 119.99841 * 341.18124 * 7 6 5 9 9 C 1.39729 * 120.00257 * 161.18633 * 7 6 5 10 10 N 1.31061 * 119.99879 * 164.30749 * 9 7 6 11 11 Si 1.86797 * 119.99950 * 344.30792 * 9 7 6 12 12 H 1.48504 * 109.46827 * 91.06438 * 11 9 7 13 13 H 1.48502 * 109.46894 * 211.05975 * 11 9 7 14 14 H 1.48494 * 109.47075 * 331.06211 * 11 9 7 15 15 C 1.38912 * 106.15815 * 179.97438 * 6 5 4 16 16 N 1.35618 * 109.29477 * 0.02562 * 15 6 5 17 17 C 1.46500 * 124.69863 * 180.02562 * 16 15 6 18 18 C 1.38307 * 110.59873 * 0.02562 * 16 15 6 19 19 C 1.39088 * 132.72008 * 180.02562 * 18 16 15 20 20 C 1.37957 * 120.03726 * 179.65887 * 19 18 16 21 21 Cl 1.73601 * 119.72847 * 180.32714 * 20 19 18 22 22 H 1.08995 * 109.46932 * 60.00246 * 1 2 3 23 23 H 1.09001 * 109.47051 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47159 * 299.99836 * 1 2 3 25 25 H 1.08003 * 120.16310 * 359.97438 * 4 3 2 26 26 H 0.97004 * 120.00062 * 180.02562 * 10 9 7 27 27 H 1.07996 * 125.35005 * 179.97438 * 15 6 5 28 28 H 1.09000 * 109.47430 * 269.98343 * 17 16 15 29 29 H 1.09007 * 109.46881 * 29.98331 * 17 16 15 30 30 H 1.08997 * 109.46921 * 149.97790 * 17 16 15 31 31 H 1.07997 * 119.98295 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2917 2.3711 0.0005 5 6 1.9296 3.6082 0.0000 6 6 1.4482 5.0045 0.0008 7 6 0.1076 5.4375 0.0019 8 1 -0.6786 4.7610 -0.2994 9 6 -0.2049 6.7421 0.3928 10 7 -1.3809 7.2469 0.1100 11 14 1.0534 7.7665 1.3183 12 1 1.8697 8.5415 0.3496 13 1 0.3527 8.7017 2.2348 14 1 1.9378 6.8710 2.1062 15 6 2.5836 5.8048 0.0002 16 7 3.6873 5.0168 -0.0015 17 6 5.0659 5.5125 -0.0020 18 6 3.3311 3.6804 -0.0026 19 6 4.0754 2.5055 -0.0039 20 6 3.4361 1.2830 0.0023 21 17 4.3730 -0.1785 0.0092 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.2131 2.3165 0.0005 26 1 -1.5977 8.1527 0.3810 27 1 2.5868 6.8848 0.0001 28 1 5.4072 5.6363 -1.0297 29 1 5.1070 6.4726 0.5126 30 1 5.7092 4.7976 0.5110 31 1 5.1545 2.5502 -0.0046 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082606168.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:41 Heat of formation + Delta-G solvation = 15.109662 kcal Electronic energy + Delta-G solvation = -17529.591847 eV Core-core repulsion = 14609.897826 eV Total energy + Delta-G solvation = -2919.694021 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.33066 -38.62056 -36.25652 -34.89321 -33.83022 -31.82168 -29.18634 -28.71838 -27.40004 -26.10067 -23.72629 -22.00258 -20.60648 -19.81173 -17.45122 -16.93793 -16.39270 -15.49614 -15.29632 -14.94062 -14.50594 -14.17666 -13.63285 -13.51983 -13.31078 -12.72692 -12.69295 -12.04392 -11.84107 -11.62460 -11.53778 -11.23427 -11.02080 -10.96777 -10.55332 -10.52464 -10.11957 -9.70474 -9.47530 -9.28985 -8.65130 -7.08692 -6.89732 -6.81367 -4.17375 1.64807 2.20641 2.62677 2.98596 3.15710 3.26820 3.63446 3.71236 3.87254 4.02246 4.39418 5.22941 5.27840 5.29537 5.44304 5.54048 5.60640 5.67000 5.73714 5.78936 5.83258 5.97754 6.18057 6.37458 6.43848 6.77915 6.94316 7.09033 7.34575 7.56558 7.87656 8.10496 8.21972 8.46006 8.69810 8.90400 10.23542 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.006990 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.310088 B = 4004.525154 C = 5092.750833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.063 3.937 4 C -0.123 4.123 5 C -0.088 4.088 6 C 0.035 3.965 7 C -0.422 4.422 8 H 0.088 0.912 9 C 0.082 3.918 10 N -0.827 5.827 11 Si 0.906 3.094 12 H -0.274 1.274 13 H -0.294 1.294 14 H -0.245 1.245 15 C -0.161 4.161 16 N -0.471 5.471 17 C 0.088 3.912 18 C 0.090 3.910 19 C -0.114 4.114 20 C -0.036 4.036 21 Cl -0.082 7.082 22 H 0.053 0.947 23 H 0.091 0.909 24 H 0.053 0.947 25 H 0.131 0.869 26 H 0.281 0.719 27 H 0.144 0.856 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.796 -6.770 0.675 10.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.017 3.983 4 C -0.142 4.142 5 C -0.095 4.095 6 C 0.029 3.971 7 C -0.453 4.453 8 H 0.106 0.894 9 C -0.134 4.134 10 N -0.454 5.454 11 Si 0.734 3.266 12 H -0.201 1.201 13 H -0.221 1.221 14 H -0.169 1.169 15 C -0.281 4.281 16 N -0.157 5.157 17 C -0.055 4.055 18 C -0.019 4.019 19 C -0.137 4.137 20 C -0.064 4.064 21 Cl -0.053 7.053 22 H 0.071 0.929 23 H 0.110 0.890 24 H 0.071 0.929 25 H 0.148 0.852 26 H 0.092 0.908 27 H 0.161 0.839 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.013 -6.690 0.680 10.461 hybrid contribution 0.371 0.814 0.379 0.972 sum 8.384 -5.876 1.059 10.293 Atomic orbital electron populations 1.22941 0.79211 1.02909 1.01489 1.86037 1.20523 1.26316 1.90143 1.18042 0.89866 0.84528 1.05890 1.20397 0.99390 0.89844 1.04575 1.19131 0.91554 0.93683 1.05176 1.18195 0.92646 0.87668 0.98607 1.18558 0.91112 0.97070 1.38544 0.89419 1.25891 0.95823 0.97416 0.94257 1.69749 1.21932 1.16175 1.37514 0.86429 0.80703 0.79057 0.80405 1.20121 1.22143 1.16882 1.21559 0.84406 0.94721 1.27418 1.42802 1.05123 1.02863 1.64897 1.21680 0.82036 1.00087 1.01695 1.17835 0.93599 0.84194 1.06275 1.19339 0.98405 0.88015 1.07898 1.19362 0.88107 0.86597 1.12297 1.98296 1.72913 1.36721 1.97400 0.92882 0.89016 0.92853 0.85160 0.90827 0.83908 0.92501 0.91079 0.91305 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.40 16 2 O -0.32 -5.47 9.94 -19.69 -0.20 -5.66 16 3 C 0.06 1.21 6.68 -39.20 -0.26 0.95 16 4 C -0.12 -2.53 9.07 -39.19 -0.36 -2.89 16 5 C -0.09 -2.04 6.33 -104.89 -0.66 -2.70 16 6 C 0.03 0.88 5.67 -104.79 -0.59 0.28 16 7 C -0.42 -11.31 9.93 -38.03 -0.38 -11.69 16 8 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.08 2.13 5.50 -17.32 -0.10 2.04 16 10 N -0.83 -22.15 13.94 55.54 0.77 -21.38 16 11 Si 0.91 20.35 24.54 -169.99 -4.17 16.18 16 12 H -0.27 -5.92 6.70 56.52 0.38 -5.54 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.25 -5.60 6.56 56.52 0.37 -5.23 16 15 C -0.16 -3.73 8.68 -15.63 -0.14 -3.87 16 16 N -0.47 -9.66 3.15 -120.72 -0.38 -10.04 16 17 C 0.09 1.30 10.97 59.85 0.66 1.96 16 18 C 0.09 1.90 6.77 -83.84 -0.57 1.33 16 19 C -0.11 -2.09 9.64 -39.37 -0.38 -2.47 16 20 C -0.04 -0.66 6.33 -39.34 -0.25 -0.91 16 21 Cl -0.08 -1.32 28.46 -51.86 -1.48 -2.79 16 22 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 23 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.70 7.66 -51.93 -0.40 0.31 16 25 H 0.13 2.53 6.29 -52.48 -0.33 2.20 16 26 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 27 H 0.14 3.24 4.17 -52.49 -0.22 3.03 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.96 8.13 -51.92 -0.42 0.54 16 30 H 0.07 0.87 7.94 -51.93 -0.41 0.46 16 31 H 0.12 1.90 7.95 -52.49 -0.42 1.49 16 LS Contribution 278.22 15.07 4.19 4.19 Total: -1.00 -28.79 278.22 -6.34 -35.13 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -3.05 Total: 0.94 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -2.03 Total: -16.57 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.39 Total: -31.42 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.20 Total: -5.66 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.17 Total: 16.18 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.48 Total: -2.79 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.79 -6.34 -35.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082606168.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.236 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds