Wall clock time and date at job start Mon Mar 30 2020 06:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35983 * 116.99797 * 2 1 4 4 C 1.38339 * 119.94390 * 0.02562 * 3 2 1 5 5 C 1.39187 * 119.66691 * 180.02562 * 4 3 2 6 6 C 1.47694 * 133.70239 * 180.02562 * 5 4 3 7 7 C 1.40876 * 126.92310 * 359.97438 * 6 5 4 8 8 H 1.08007 * 119.99841 * 341.18124 * 7 6 5 9 9 C 1.39729 * 120.00257 * 161.18633 * 7 6 5 10 10 N 1.31061 * 119.99879 * 164.30749 * 9 7 6 11 11 Si 1.86797 * 119.99950 * 344.30792 * 9 7 6 12 12 H 1.48504 * 109.46827 * 91.06438 * 11 9 7 13 13 H 1.48502 * 109.46894 * 211.05975 * 11 9 7 14 14 H 1.48494 * 109.47075 * 331.06211 * 11 9 7 15 15 C 1.38912 * 106.15815 * 179.97438 * 6 5 4 16 16 N 1.35618 * 109.29477 * 0.02562 * 15 6 5 17 17 C 1.46500 * 124.69863 * 180.02562 * 16 15 6 18 18 C 1.38307 * 110.59873 * 0.02562 * 16 15 6 19 19 C 1.39088 * 132.72008 * 180.02562 * 18 16 15 20 20 C 1.37957 * 120.03726 * 179.65887 * 19 18 16 21 21 Cl 1.73601 * 119.72847 * 180.32714 * 20 19 18 22 22 H 1.08995 * 109.46932 * 60.00246 * 1 2 3 23 23 H 1.09001 * 109.47051 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47159 * 299.99836 * 1 2 3 25 25 H 1.08003 * 120.16310 * 359.97438 * 4 3 2 26 26 H 0.97004 * 120.00062 * 180.02562 * 10 9 7 27 27 H 1.07996 * 125.35005 * 179.97438 * 15 6 5 28 28 H 1.09000 * 109.47430 * 269.98343 * 17 16 15 29 29 H 1.09007 * 109.46881 * 29.98331 * 17 16 15 30 30 H 1.08997 * 109.46921 * 149.97790 * 17 16 15 31 31 H 1.07997 * 119.98295 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2917 2.3711 0.0005 5 6 1.9296 3.6082 0.0000 6 6 1.4482 5.0045 0.0008 7 6 0.1076 5.4375 0.0019 8 1 -0.6786 4.7610 -0.2994 9 6 -0.2049 6.7421 0.3928 10 7 -1.3809 7.2469 0.1100 11 14 1.0534 7.7665 1.3183 12 1 1.8697 8.5415 0.3496 13 1 0.3527 8.7017 2.2348 14 1 1.9378 6.8710 2.1062 15 6 2.5836 5.8048 0.0002 16 7 3.6873 5.0168 -0.0015 17 6 5.0659 5.5125 -0.0020 18 6 3.3311 3.6804 -0.0026 19 6 4.0754 2.5055 -0.0039 20 6 3.4361 1.2830 0.0023 21 17 4.3730 -0.1785 0.0092 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.2131 2.3165 0.0005 26 1 -1.5977 8.1527 0.3810 27 1 2.5868 6.8848 0.0001 28 1 5.4072 5.6363 -1.0297 29 1 5.1070 6.4726 0.5126 30 1 5.7092 4.7976 0.5110 31 1 5.1545 2.5502 -0.0046 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082606168.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:41 Heat of formation + Delta-G solvation = -1.886031 kcal Electronic energy + Delta-G solvation = -17530.328836 eV Core-core repulsion = 14609.897826 eV Total energy + Delta-G solvation = -2920.431010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.92400 -40.06703 -37.64850 -36.37325 -35.65153 -33.49944 -30.66714 -30.29663 -28.84766 -27.52911 -25.35769 -23.56367 -22.14020 -21.54200 -19.12079 -18.46509 -17.99158 -17.12903 -16.64509 -16.52941 -15.91560 -15.76478 -15.25217 -15.07744 -14.86887 -14.06587 -14.01336 -13.59067 -13.34269 -13.18384 -13.08871 -12.71235 -12.55821 -12.32445 -12.23872 -11.95969 -11.71244 -11.50147 -11.13063 -10.93107 -10.30566 -8.77121 -8.72984 -8.49986 -6.11021 0.07090 0.65331 1.18383 1.19743 1.34721 1.49008 1.84296 2.17323 2.30660 2.48957 2.75680 3.33971 3.81005 3.96364 4.16093 4.32515 4.33914 4.43125 4.46785 4.54405 4.66164 4.72760 4.74584 4.79997 4.88361 5.09521 5.27077 5.49882 5.62770 5.78406 6.23586 6.40869 6.50524 6.67712 6.89218 6.96327 8.37431 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.006990 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.310088 B = 4004.525154 C = 5092.750833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.321 6.321 3 C 0.074 3.926 4 C -0.143 4.143 5 C -0.124 4.124 6 C -0.006 4.006 7 C -0.453 4.453 8 H 0.049 0.951 9 C 0.038 3.962 10 N -0.874 5.874 11 Si 0.964 3.036 12 H -0.254 1.254 13 H -0.286 1.286 14 H -0.250 1.250 15 C -0.138 4.138 16 N -0.475 5.475 17 C 0.076 3.924 18 C 0.079 3.921 19 C -0.094 4.094 20 C -0.044 4.044 21 Cl -0.054 7.054 22 H 0.051 0.949 23 H 0.128 0.872 24 H 0.052 0.948 25 H 0.126 0.874 26 H 0.287 0.713 27 H 0.151 0.849 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.168 -7.599 1.079 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.235 6.235 3 C 0.027 3.973 4 C -0.162 4.162 5 C -0.131 4.131 6 C -0.012 4.012 7 C -0.485 4.485 8 H 0.067 0.933 9 C -0.173 4.173 10 N -0.504 5.504 11 Si 0.789 3.211 12 H -0.180 1.180 13 H -0.213 1.213 14 H -0.174 1.174 15 C -0.260 4.260 16 N -0.160 5.160 17 C -0.065 4.065 18 C -0.030 4.030 19 C -0.116 4.116 20 C -0.072 4.072 21 Cl -0.025 7.025 22 H 0.070 0.930 23 H 0.146 0.854 24 H 0.070 0.930 25 H 0.144 0.856 26 H 0.097 0.903 27 H 0.168 0.832 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.424 -7.547 1.073 13.734 hybrid contribution -0.553 0.793 0.203 0.988 sum 10.870 -6.754 1.277 12.862 Atomic orbital electron populations 1.23226 0.77276 1.05260 1.01412 1.86034 1.22490 1.25268 1.89676 1.18175 0.90494 0.84572 1.04084 1.20424 0.99557 0.90118 1.06128 1.19353 0.93197 0.93503 1.07058 1.18341 0.92488 0.89624 1.00743 1.18511 0.91512 0.97421 1.41056 0.93268 1.26617 0.97690 0.98181 0.94772 1.69807 1.23783 1.17040 1.39754 0.85551 0.78582 0.77586 0.79397 1.18015 1.21270 1.17429 1.21722 0.85118 0.95134 1.24045 1.43114 1.06591 1.02361 1.63900 1.22113 0.79106 1.01556 1.03700 1.18054 0.92956 0.85312 1.06701 1.19656 0.99968 0.86726 1.05206 1.19576 0.88220 0.87944 1.11485 1.98308 1.71979 1.35024 1.97231 0.93036 0.85390 0.92969 0.85634 0.90269 0.83197 0.90495 0.89564 0.88547 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 16 2 O -0.32 -10.61 9.94 -93.36 -0.93 -11.54 16 3 C 0.07 2.75 6.68 22.51 0.15 2.90 16 4 C -0.14 -6.03 9.07 22.52 0.20 -5.83 16 5 C -0.12 -5.81 6.33 -20.04 -0.13 -5.94 16 6 C -0.01 -0.29 5.67 -19.97 -0.11 -0.40 16 7 C -0.45 -25.88 9.93 23.28 0.23 -25.65 16 8 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 9 C 0.04 2.05 5.50 85.17 0.47 2.52 16 10 N -0.87 -49.28 13.94 21.80 0.30 -48.98 16 11 Si 0.96 42.24 24.54 68.60 1.68 43.93 16 12 H -0.25 -10.22 6.70 99.48 0.67 -9.55 16 13 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 14 H -0.25 -11.03 6.56 99.48 0.65 -10.37 16 15 C -0.14 -6.27 8.68 84.27 0.73 -5.54 16 16 N -0.47 -18.23 3.15 -535.86 -1.69 -19.92 16 17 C 0.08 1.91 10.97 127.77 1.40 3.31 16 18 C 0.08 3.18 6.77 38.84 0.26 3.44 16 19 C -0.09 -3.13 9.64 22.41 0.22 -2.91 16 20 C -0.04 -1.51 6.33 22.42 0.14 -1.37 16 21 Cl -0.05 -1.56 28.46 -2.72 -0.08 -1.63 16 22 H 0.05 1.36 7.66 -2.39 -0.02 1.34 16 23 H 0.13 2.38 8.14 -2.39 -0.02 2.37 16 24 H 0.05 1.38 7.66 -2.39 -0.02 1.36 16 25 H 0.13 5.23 6.29 -2.91 -0.02 5.21 16 26 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 27 H 0.15 6.53 4.17 -2.91 -0.01 6.52 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.93 8.13 -2.38 -0.02 1.91 16 30 H 0.10 1.91 7.94 -2.39 -0.02 1.89 16 31 H 0.16 4.08 7.95 -2.91 -0.02 4.06 16 Total: -1.00 -64.94 278.22 5.04 -59.90 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.07 Total: 12.00 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 4.68 Total: -33.76 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: -1.39 Total: -68.90 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.93 Total: -11.54 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.68 Total: 43.93 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.63 kcal Total: -64.94 5.04 -59.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082606168.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.014 kcal (2) G-P(sol) polarization free energy of solvation -64.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds