Wall clock time and date at job start Mon Mar 30 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35992 * 117.00133 * 2 1 4 4 C 1.38340 * 119.93450 * 0.02562 * 3 2 1 5 5 C 1.39187 * 119.66103 * 179.97438 * 4 3 2 6 6 C 1.40345 * 120.22303 * 0.02603 * 5 4 3 7 7 C 1.39078 * 119.40777 * 359.97438 * 6 5 4 8 8 C 1.37956 * 120.03690 * 359.97438 * 7 6 5 9 9 Cl 1.73601 * 119.72909 * 179.97438 * 8 7 6 10 10 N 1.38318 * 107.86942 * 180.02562 * 6 5 4 11 11 H 0.97006 * 124.69567 * 180.02562 * 10 6 5 12 12 C 1.35610 * 110.60018 * 0.02562 * 10 6 5 13 13 C 1.50699 * 125.35274 * 179.97438 * 12 10 6 14 14 C 1.38910 * 109.29801 * 0.25905 * 12 10 6 15 15 C 1.40881 * 126.91879 * 179.73717 * 14 12 10 16 16 H 1.07994 * 120.00274 * 30.74880 * 15 14 12 17 17 C 1.39732 * 119.99678 * 210.74282 * 15 14 12 18 18 N 1.31057 * 120.00339 * 19.45592 * 17 15 14 19 19 Si 1.86799 * 119.99561 * 199.45639 * 17 15 14 20 20 H 1.48496 * 109.47661 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46982 * 120.00346 * 19 17 15 22 22 H 1.48508 * 109.47164 * 239.99826 * 19 17 15 23 23 H 1.08993 * 109.47123 * 299.99708 * 1 2 3 24 24 H 1.09002 * 109.46808 * 60.00449 * 1 2 3 25 25 H 1.09005 * 109.46810 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.17245 * 359.95775 * 4 3 2 27 27 H 1.07998 * 119.98450 * 180.02562 * 7 6 5 28 28 H 1.09007 * 109.47056 * 95.08329 * 13 12 10 29 29 H 1.08996 * 109.47257 * 335.08507 * 13 12 10 30 30 H 1.08998 * 109.47149 * 215.08207 * 13 12 10 31 31 H 0.96994 * 120.00451 * 174.49105 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2917 2.3711 0.0005 5 6 1.9295 3.6082 0.0011 6 6 3.3311 3.6804 0.0005 7 6 4.0754 2.5055 0.0000 8 6 3.4361 1.2830 0.0005 9 17 4.3731 -0.1784 -0.0008 10 7 3.6873 5.0169 0.0018 11 1 4.6001 5.3451 0.0014 12 6 2.5835 5.8048 0.0038 13 6 2.5880 7.3118 0.0061 14 6 1.4482 5.0045 0.0097 15 6 0.1076 5.4375 0.0185 16 1 -0.1621 6.3689 -0.4568 17 6 -0.8730 4.6617 0.6422 18 7 -0.5293 3.7585 1.5275 19 14 -2.6740 4.9119 0.2140 20 1 -2.7960 5.9836 -0.8066 21 1 -3.2345 3.6477 -0.3270 22 1 -3.4234 5.3030 1.4351 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2131 2.3166 0.0003 27 1 5.1545 2.5502 0.0000 28 1 2.4973 7.6770 -1.0169 29 1 3.5213 7.6717 0.4390 30 1 1.7485 7.6766 0.5979 31 1 -1.2126 3.2759 2.0185 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082606169.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:12 Heat of formation + Delta-G solvation = -14.080785 kcal Electronic energy + Delta-G solvation = -17800.439266 eV Core-core repulsion = 14879.479452 eV Total energy + Delta-G solvation = -2920.959814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.66476 -39.89343 -37.56244 -36.19746 -35.47797 -32.27404 -31.35197 -29.99585 -28.90327 -27.27764 -26.01731 -22.78800 -22.30958 -20.91148 -19.11443 -18.33724 -17.57234 -16.80520 -16.60412 -16.52860 -15.86952 -15.15351 -14.93645 -14.87149 -14.39965 -13.86822 -13.76359 -13.44143 -13.19253 -13.00146 -12.88600 -12.68445 -12.41750 -12.37383 -12.26444 -11.87090 -11.80031 -11.24603 -10.97010 -10.81349 -10.05065 -8.52568 -8.37871 -8.15815 -5.90905 0.29172 0.83862 1.27963 1.35429 1.43953 1.55489 2.12345 2.33352 2.51383 2.80251 2.99503 3.49267 4.04726 4.24168 4.40034 4.47991 4.55152 4.61638 4.71351 4.78082 4.87555 4.98921 5.01620 5.04769 5.34903 5.42203 5.47563 5.75110 5.82931 6.09654 6.42592 6.55466 6.76603 7.05025 7.21384 7.35727 8.62575 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.008750 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.552070 B = 3199.207161 C = 4646.413954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.050 3.950 4 C -0.107 4.107 5 C -0.097 4.097 6 C 0.062 3.938 7 C -0.107 4.107 8 C -0.051 4.051 9 Cl -0.064 7.064 10 N -0.574 5.574 11 H 0.414 0.586 12 C -0.093 4.093 13 C -0.046 4.046 14 C 0.010 3.990 15 C -0.484 4.484 16 H 0.071 0.929 17 C 0.040 3.960 18 N -0.841 5.841 19 Si 0.958 3.042 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.273 1.273 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.152 0.848 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -2.417 -2.338 5.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.003 3.997 4 C -0.127 4.127 5 C -0.104 4.104 6 C -0.048 4.048 7 C -0.129 4.129 8 C -0.079 4.079 9 Cl -0.035 7.035 10 N -0.180 5.180 11 H 0.252 0.748 12 C -0.198 4.198 13 C -0.103 4.103 14 C 0.004 3.996 15 C -0.517 4.517 16 H 0.089 0.911 17 C -0.171 4.171 18 N -0.470 5.470 19 Si 0.781 3.219 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.199 1.199 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.146 0.854 26 H 0.143 0.857 27 H 0.170 0.830 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.329 -2.817 -2.234 5.627 hybrid contribution -0.769 0.200 0.097 0.801 sum 3.559 -2.618 -2.138 4.908 Atomic orbital electron populations 1.23095 0.77896 1.04668 1.00847 1.85979 1.21965 1.25799 1.90086 1.18393 0.90611 0.84880 1.05781 1.20645 0.99650 0.90032 1.02363 1.19417 0.92124 0.94452 1.04425 1.18085 0.93724 0.85487 1.07505 1.19575 0.99557 0.87136 1.06645 1.19516 0.88031 0.87640 1.12748 1.98280 1.72200 1.35644 1.97376 1.40783 1.07804 1.02282 1.67134 0.74806 1.20927 0.85225 0.93643 1.20031 1.19899 1.02014 0.86970 1.01430 1.18199 0.92872 0.88430 1.00058 1.18705 0.91375 1.06865 1.34785 0.91085 1.26325 1.03987 0.93464 0.93333 1.70032 1.36177 1.22016 1.18808 0.85515 0.78381 0.79007 0.78952 1.18588 1.19622 1.19858 0.93855 0.93612 0.85449 0.85681 0.83023 0.92112 0.91049 0.92163 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.81 113.37 1.11 2.09 16 2 O -0.32 -12.83 9.94 -93.46 -0.93 -13.76 16 3 C 0.05 2.19 6.68 22.51 0.15 2.34 16 4 C -0.11 -5.24 7.72 22.52 0.17 -5.06 16 5 C -0.10 -4.93 5.78 -20.04 -0.12 -5.05 16 6 C 0.06 2.70 7.23 38.83 0.28 2.98 16 7 C -0.11 -4.13 9.83 22.40 0.22 -3.91 16 8 C -0.05 -2.06 6.33 22.42 0.14 -1.92 16 9 Cl -0.06 -2.15 28.46 -2.72 -0.08 -2.23 16 10 N -0.57 -22.50 6.00 -173.27 -1.04 -23.54 16 11 H 0.41 12.51 8.96 -92.70 -0.83 11.67 16 12 C -0.09 -4.08 7.23 42.14 0.30 -3.78 16 13 C -0.05 -1.58 10.17 71.24 0.72 -0.86 16 14 C 0.01 0.54 5.72 -19.97 -0.11 0.43 16 15 C -0.48 -25.61 8.93 23.28 0.21 -25.40 16 16 H 0.07 3.65 7.91 -2.91 -0.02 3.62 16 17 C 0.04 2.03 4.88 85.17 0.42 2.44 16 18 N -0.84 -44.01 10.30 21.80 0.22 -43.78 16 19 Si 0.96 38.87 29.61 68.60 2.03 40.90 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 21 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H 0.04 1.53 7.66 -2.39 -0.02 1.51 16 24 H 0.05 1.51 7.66 -2.39 -0.02 1.49 16 25 H 0.13 3.10 8.14 -2.38 -0.02 3.08 16 26 H 0.13 6.28 4.55 -2.91 -0.01 6.26 16 27 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 28 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 2.21 8.02 -2.39 -0.02 2.19 16 31 H 0.28 13.36 8.31 -92.71 -0.77 12.59 16 Total: -1.00 -60.92 281.49 4.06 -56.86 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.35 Total: 21.24 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 3.50 Total: -35.69 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -0.81 Total: -67.32 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.93 Total: -13.76 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.08 Total: -2.23 kcal Total: -60.92 4.06 -56.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082606169.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.777 kcal (2) G-P(sol) polarization free energy of solvation -60.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds