Wall clock time and date at job start Mon Mar 30 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38140 * 120.20961 * 359.72903 * 3 2 1 5 5 C 1.38769 * 120.32215 * 179.67453 * 4 3 2 6 6 C 1.37840 * 120.70393 * 0.61322 * 5 4 3 7 7 Cl 1.73600 * 119.99831 * 179.67529 * 6 5 4 8 8 C 1.39262 * 120.00446 * 359.70041 * 6 5 4 9 9 N 1.37736 * 133.38629 * 179.97438 * 8 6 5 10 10 H 0.96998 * 125.07071 * 0.02562 * 9 8 6 11 11 C 1.36915 * 109.85609 * 180.02562 * 9 8 6 12 12 C 1.34212 * 109.89565 * 0.02562 * 11 9 8 13 13 C 1.50702 * 126.49626 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.46901 * 264.99913 * 13 12 11 15 15 H 1.07998 * 120.00077 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00000 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00436 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 119.99955 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46747 * 90.00362 * 18 16 14 20 20 H 1.48500 * 109.47078 * 210.00105 * 18 16 14 21 21 H 1.48504 * 109.46899 * 330.00222 * 18 16 14 22 22 C 1.40029 * 120.21159 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 26 26 H 1.08002 * 119.83358 * 359.97174 * 4 3 2 27 27 H 1.08002 * 119.64510 * 180.28672 * 5 4 3 28 28 H 1.08007 * 125.05330 * 180.02562 * 11 9 8 29 29 H 1.08998 * 109.47479 * 25.00216 * 13 12 11 30 30 H 1.09004 * 109.46863 * 145.00378 * 13 12 11 31 31 H 0.96996 * 120.00254 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2980 2.3722 -0.0056 5 6 1.9256 3.6098 0.0011 6 6 3.3010 3.7015 0.0009 7 17 4.0670 5.2594 0.0010 8 6 4.0761 2.5445 0.0001 9 7 5.4343 2.3156 -0.0007 10 1 6.1158 3.0058 -0.0006 11 6 5.6788 0.9685 -0.0019 12 6 4.5187 0.2937 -0.0024 13 6 4.3530 -1.2042 -0.0041 14 6 4.1743 -1.6881 -1.4201 15 1 4.1805 -0.9817 -2.2370 16 6 4.0029 -3.0326 -1.6726 17 7 3.8474 -3.4551 -2.9083 18 14 3.9929 -4.2546 -0.2597 19 1 2.6040 -4.4247 0.2377 20 1 4.5130 -5.5626 -0.7327 21 1 4.8536 -3.7477 0.8392 22 6 3.4442 1.2892 0.0005 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2195 2.3165 -0.0105 27 1 1.3301 4.5108 0.0013 28 1 6.6596 0.5161 -0.0023 29 1 5.2389 -1.6683 0.4294 30 1 3.4765 -1.4735 0.5852 31 1 3.7264 -4.4009 -3.0860 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082606173.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:58 Heat of formation + Delta-G solvation = 9.931001 kcal Electronic energy + Delta-G solvation = -17556.646731 eV Core-core repulsion = 14636.728145 eV Total energy + Delta-G solvation = -2919.918585 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.94054 -38.67775 -36.69009 -35.36947 -33.33662 -31.49907 -29.45365 -28.90000 -27.20354 -26.60089 -22.51319 -22.19614 -21.61020 -19.11601 -17.70355 -16.72207 -16.62255 -15.87904 -15.36692 -15.22657 -14.80104 -14.19694 -13.94785 -13.32521 -12.77637 -12.54923 -12.34088 -12.23760 -12.03080 -11.66512 -11.54964 -11.38433 -10.97436 -10.73438 -10.35445 -10.26719 -10.11963 -9.92358 -9.27563 -8.45925 -8.40458 -7.98448 -6.83827 -5.94513 -3.90424 1.40350 1.81245 2.38084 3.27125 3.36808 3.41372 3.43743 3.47006 3.76630 4.10385 4.52565 4.98332 5.19446 5.29134 5.35212 5.42838 5.45611 5.59857 5.73744 5.83823 5.87297 6.19102 6.29026 6.46991 6.55656 6.84488 7.08703 7.16375 7.41184 7.57614 7.82081 7.85887 7.96373 8.65572 9.12102 9.67168 11.19124 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.006497 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.105211 B = 4308.884595 C = 5069.679826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.283 6.283 3 C 0.208 3.792 4 C -0.259 4.259 5 C -0.047 4.047 6 C -0.095 4.095 7 Cl -0.094 7.094 8 C 0.138 3.862 9 N -0.588 5.588 10 H 0.413 0.587 11 C 0.005 3.995 12 C -0.077 4.077 13 C 0.046 3.954 14 C -0.496 4.496 15 H 0.070 0.930 16 C 0.067 3.933 17 N -0.906 5.906 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.265 1.265 22 C -0.122 4.122 23 H 0.099 0.901 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.170 0.830 29 H 0.024 0.976 30 H 0.030 0.970 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 13.053 7.914 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.194 6.194 3 C 0.160 3.840 4 C -0.280 4.280 5 C -0.067 4.067 6 C -0.124 4.124 7 Cl -0.066 7.066 8 C 0.027 3.973 9 N -0.191 5.191 10 H 0.249 0.751 11 C -0.117 4.117 12 C -0.083 4.083 13 C 0.009 3.991 14 C -0.534 4.534 15 H 0.088 0.912 16 C -0.133 4.133 17 N -0.546 5.546 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.190 1.190 22 C -0.128 4.128 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.187 0.813 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.853 12.842 7.807 15.297 hybrid contribution 0.075 -0.061 0.466 0.476 sum -2.778 12.782 8.272 15.476 Atomic orbital electron populations 1.23078 0.79206 1.03964 1.00741 1.86366 1.20456 1.25895 1.86670 1.18540 0.90145 0.84482 0.90811 1.20708 0.99680 0.91067 1.16509 1.20294 0.90979 0.97637 0.97820 1.19493 0.91995 0.82660 1.18291 1.98304 1.82101 1.28470 1.97719 1.17440 0.84206 0.92539 1.03107 1.41638 1.04417 1.07569 1.65472 0.75062 1.21580 0.99840 0.80873 1.09447 1.20708 0.89053 0.96401 1.02125 1.18214 0.96972 0.85523 0.98416 1.20916 1.48543 0.92887 0.91029 0.91170 1.24948 0.94920 0.98161 0.95254 1.69907 1.50785 1.15040 1.18863 0.86846 0.78788 0.80731 0.83330 1.20275 1.21597 1.19018 1.18305 0.90538 0.92358 1.11645 0.88283 0.92705 0.93078 0.85026 0.85160 0.81291 0.95789 0.95224 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.28 -5.56 9.76 -19.43 -0.19 -5.75 16 3 C 0.21 3.95 6.72 -38.95 -0.26 3.69 16 4 C -0.26 -3.97 9.04 -39.42 -0.36 -4.32 16 5 C -0.05 -0.68 9.79 -39.53 -0.39 -1.07 16 6 C -0.09 -1.48 6.33 -39.35 -0.25 -1.73 16 7 Cl -0.09 -1.24 28.96 -51.86 -1.50 -2.75 16 8 C 0.14 2.45 7.06 -83.96 -0.59 1.86 16 9 N -0.59 -9.32 6.08 -10.62 -0.06 -9.38 16 10 H 0.41 5.14 8.96 -40.82 -0.37 4.77 16 11 C 0.00 0.09 11.74 -16.70 -0.20 -0.11 16 12 C -0.08 -1.67 5.50 -102.72 -0.57 -2.23 16 13 C 0.05 1.14 4.35 -29.03 -0.13 1.01 16 14 C -0.50 -14.25 9.65 -34.44 -0.33 -14.58 16 15 H 0.07 2.24 7.98 -52.49 -0.42 1.82 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.91 -28.06 13.96 55.43 0.77 -27.29 16 18 Si 0.88 21.67 27.47 -169.99 -4.67 17.01 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 22 C -0.12 -2.50 6.29 -105.04 -0.66 -3.16 16 23 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.05 0.68 7.65 -51.93 -0.40 0.28 16 25 H 0.05 0.57 7.68 -51.93 -0.40 0.17 16 26 H 0.13 1.62 6.29 -52.49 -0.33 1.29 16 27 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.17 2.56 8.06 -52.48 -0.42 2.13 16 29 H 0.02 0.57 7.20 -51.93 -0.37 0.19 16 30 H 0.03 0.74 7.05 -51.93 -0.37 0.37 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 284.10 15.07 4.28 4.28 Total: -1.00 -32.82 284.10 -7.29 -40.11 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.09 Total: 1.21 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -2.83 Total: -17.43 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.71 Total: -36.67 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.19 Total: -5.75 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.82 -7.29 -40.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082606173.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.038 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds