Wall clock time and date at job start Mon Mar 30 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38140 * 120.20961 * 359.72903 * 3 2 1 5 5 C 1.38769 * 120.32215 * 179.67453 * 4 3 2 6 6 C 1.37840 * 120.70393 * 0.61322 * 5 4 3 7 7 Cl 1.73600 * 119.99831 * 179.67529 * 6 5 4 8 8 C 1.39262 * 120.00446 * 359.70041 * 6 5 4 9 9 N 1.37736 * 133.38629 * 179.97438 * 8 6 5 10 10 H 0.96998 * 125.07071 * 0.02562 * 9 8 6 11 11 C 1.36915 * 109.85609 * 180.02562 * 9 8 6 12 12 C 1.34212 * 109.89565 * 0.02562 * 11 9 8 13 13 C 1.50702 * 126.49626 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.46901 * 264.99913 * 13 12 11 15 15 H 1.07998 * 120.00077 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00000 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00436 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 119.99955 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46747 * 90.00362 * 18 16 14 20 20 H 1.48500 * 109.47078 * 210.00105 * 18 16 14 21 21 H 1.48504 * 109.46899 * 330.00222 * 18 16 14 22 22 C 1.40029 * 120.21159 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 26 26 H 1.08002 * 119.83358 * 359.97174 * 4 3 2 27 27 H 1.08002 * 119.64510 * 180.28672 * 5 4 3 28 28 H 1.08007 * 125.05330 * 180.02562 * 11 9 8 29 29 H 1.08998 * 109.47479 * 25.00216 * 13 12 11 30 30 H 1.09004 * 109.46863 * 145.00378 * 13 12 11 31 31 H 0.96996 * 120.00254 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2980 2.3722 -0.0056 5 6 1.9256 3.6098 0.0011 6 6 3.3010 3.7015 0.0009 7 17 4.0670 5.2594 0.0010 8 6 4.0761 2.5445 0.0001 9 7 5.4343 2.3156 -0.0007 10 1 6.1158 3.0058 -0.0006 11 6 5.6788 0.9685 -0.0019 12 6 4.5187 0.2937 -0.0024 13 6 4.3530 -1.2042 -0.0041 14 6 4.1743 -1.6881 -1.4201 15 1 4.1805 -0.9817 -2.2370 16 6 4.0029 -3.0326 -1.6726 17 7 3.8474 -3.4551 -2.9083 18 14 3.9929 -4.2546 -0.2597 19 1 2.6040 -4.4247 0.2377 20 1 4.5130 -5.5626 -0.7327 21 1 4.8536 -3.7477 0.8392 22 6 3.4442 1.2892 0.0005 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2195 2.3165 -0.0105 27 1 1.3301 4.5108 0.0013 28 1 6.6596 0.5161 -0.0023 29 1 5.2389 -1.6683 0.4294 30 1 3.4765 -1.4735 0.5852 31 1 3.7264 -4.4009 -3.0860 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082606173.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:58 Heat of formation + Delta-G solvation = -11.368097 kcal Electronic energy + Delta-G solvation = -17557.570329 eV Core-core repulsion = 14636.728145 eV Total energy + Delta-G solvation = -2920.842183 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.26471 -39.97246 -37.86581 -36.58577 -35.32537 -33.30549 -30.90652 -30.21608 -28.74433 -27.87392 -24.48434 -23.48836 -22.88454 -20.53141 -19.12310 -18.85795 -17.96749 -17.16692 -16.62578 -16.47035 -16.20972 -15.98046 -15.34502 -14.80916 -14.53642 -14.14200 -13.79128 -13.53974 -13.35976 -13.14539 -12.96487 -12.68575 -12.38076 -12.22475 -12.05657 -11.92143 -11.59886 -11.49303 -11.35057 -10.68575 -9.86351 -9.28270 -8.22855 -8.16659 -6.20989 0.11853 0.54112 1.20290 1.40401 1.41767 1.53733 1.82832 2.17291 2.42858 2.54990 2.78059 3.15289 3.79553 4.02394 4.13182 4.20952 4.36831 4.45508 4.47507 4.64341 4.76109 4.79031 4.95728 5.16608 5.18592 5.32111 5.44434 5.55506 5.67167 5.89158 6.05759 6.40218 6.59614 6.71671 6.83539 7.40524 8.97598 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.006497 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.105211 B = 4308.884595 C = 5069.679826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.174 3.826 4 C -0.245 4.245 5 C -0.042 4.042 6 C -0.099 4.099 7 Cl -0.070 7.070 8 C 0.129 3.871 9 N -0.576 5.576 10 H 0.430 0.570 11 C 0.030 3.970 12 C -0.138 4.138 13 C 0.060 3.940 14 C -0.496 4.496 15 H 0.019 0.981 16 C 0.007 3.993 17 N -0.955 5.955 18 Si 0.947 3.053 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.245 1.245 22 C -0.159 4.159 23 H 0.102 0.898 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.163 0.837 27 H 0.167 0.833 28 H 0.196 0.804 29 H 0.032 0.968 30 H 0.020 0.980 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 14.708 9.645 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.127 3.873 4 C -0.265 4.265 5 C -0.061 4.061 6 C -0.129 4.129 7 Cl -0.041 7.041 8 C 0.018 3.982 9 N -0.180 5.180 10 H 0.270 0.730 11 C -0.094 4.094 12 C -0.144 4.144 13 C 0.022 3.978 14 C -0.534 4.534 15 H 0.037 0.963 16 C -0.189 4.189 17 N -0.597 5.597 18 Si 0.771 3.229 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.168 1.168 22 C -0.165 4.165 23 H 0.121 0.879 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.180 0.820 27 H 0.185 0.815 28 H 0.213 0.787 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.119 14.551 9.551 17.683 hybrid contribution 0.127 -0.400 -0.144 0.443 sum -2.993 14.152 9.406 17.254 Atomic orbital electron populations 1.23356 0.76830 1.04969 1.02625 1.86282 1.23219 1.27093 1.87223 1.18885 0.90250 0.85420 0.92735 1.21081 1.01084 0.90159 1.14161 1.20764 0.90856 0.98587 0.95932 1.19674 0.92512 0.83212 1.17479 1.98313 1.81813 1.26427 1.97595 1.17645 0.84693 0.92508 1.03325 1.41570 1.04487 1.07276 1.64631 0.73004 1.21864 0.99857 0.81561 1.06130 1.20581 0.91411 0.95378 1.07009 1.17916 0.96603 0.88145 0.95125 1.21096 1.47937 0.92220 0.92150 0.96261 1.25887 0.94464 1.00365 0.98153 1.70072 1.52488 1.15684 1.21480 0.85710 0.79462 0.77749 0.80025 1.19523 1.21003 1.16808 1.18671 0.91548 0.93214 1.13018 0.87923 0.91606 0.90210 0.81952 0.81508 0.78688 0.94987 0.96156 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.33 -13.10 9.76 -92.43 -0.90 -14.00 16 3 C 0.17 6.65 6.72 22.68 0.15 6.80 16 4 C -0.24 -7.00 9.04 22.37 0.20 -6.80 16 5 C -0.04 -1.08 9.79 22.30 0.22 -0.86 16 6 C -0.10 -2.86 6.33 22.42 0.14 -2.72 16 7 Cl -0.07 -1.64 28.96 -2.72 -0.08 -1.72 16 8 C 0.13 4.45 7.06 39.02 0.28 4.72 16 9 N -0.58 -17.46 6.08 -187.52 -1.14 -18.60 16 10 H 0.43 9.78 8.96 -92.71 -0.83 8.95 16 11 C 0.03 1.05 11.74 82.98 0.97 2.03 16 12 C -0.14 -6.08 5.50 -18.63 -0.10 -6.18 16 13 C 0.06 3.00 4.35 29.10 0.13 3.13 16 14 C -0.50 -29.75 9.65 25.60 0.25 -29.51 16 15 H 0.02 1.30 7.98 -2.91 -0.02 1.28 16 16 C 0.01 0.42 5.47 84.65 0.46 0.88 16 17 N -0.96 -61.34 13.96 21.45 0.30 -61.04 16 18 Si 0.95 45.29 27.47 68.60 1.88 47.17 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.24 -10.78 6.54 99.48 0.65 -10.13 16 22 C -0.16 -6.56 6.29 -20.13 -0.13 -6.69 16 23 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.07 1.57 7.65 -2.39 -0.02 1.55 16 25 H 0.08 1.63 7.68 -2.38 -0.02 1.61 16 26 H 0.16 3.48 6.29 -2.91 -0.02 3.47 16 27 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 28 H 0.20 5.60 8.06 -2.91 -0.02 5.57 16 29 H 0.03 1.51 7.20 -2.39 -0.02 1.49 16 30 H 0.02 1.03 7.05 -2.38 -0.02 1.02 16 31 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -74.81 284.10 4.03 -70.78 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.28 Total: 11.05 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 3.68 Total: -33.64 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -0.84 Total: -79.64 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.90 Total: -14.00 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -74.81 4.03 -70.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082606173.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.414 kcal (2) G-P(sol) polarization free energy of solvation -74.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds