Wall clock time and date at job start Mon Mar 30 2020 06:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35839 * 117.00127 * 2 1 4 4 C 1.38490 * 120.19995 * 0.02562 * 3 2 1 5 5 C 1.38530 * 120.19175 * 179.97438 * 4 3 2 6 6 C 1.38044 * 120.66411 * 359.97438 * 5 4 3 7 7 Cl 1.73601 * 119.96619 * 180.02562 * 6 5 4 8 8 C 1.39228 * 120.07213 * 359.97438 * 6 5 4 9 9 C 1.39615 * 120.19645 * 179.72306 * 3 2 1 10 10 C 1.47606 * 133.76502 * 0.61459 * 9 3 2 11 11 C 1.40896 * 126.92592 * 359.40453 * 10 9 3 12 12 H 1.07995 * 120.00655 * 0.21224 * 11 10 9 13 13 C 1.39689 * 119.99698 * 180.21100 * 11 10 9 14 14 N 1.31069 * 120.00302 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99889 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47080 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47230 * 119.99878 * 15 13 11 18 18 H 1.48498 * 109.47171 * 240.00000 * 15 13 11 19 19 C 1.38940 * 106.14233 * 179.59934 * 10 9 3 20 20 N 1.35641 * 109.25582 * 359.80373 * 19 10 9 21 21 C 1.46504 * 124.69296 * 179.97438 * 20 19 10 22 22 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46938 * 59.99551 * 1 2 3 24 24 H 1.09004 * 109.46926 * 299.99672 * 1 2 3 25 25 H 1.08001 * 119.90430 * 359.94607 * 4 3 2 26 26 H 1.08000 * 119.66668 * 179.97438 * 5 4 3 27 27 H 0.97008 * 120.00528 * 180.02562 * 14 13 11 28 28 H 1.07999 * 125.37070 * 179.78348 * 19 10 9 29 29 H 1.08998 * 109.47103 * 269.99699 * 21 20 19 30 30 H 1.08994 * 109.47080 * 30.00398 * 21 20 19 31 31 H 1.08999 * 109.46845 * 150.00195 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 1.2956 2.3744 0.0005 5 6 1.9247 3.6086 0.0011 6 6 3.3023 3.6966 0.0016 7 17 4.0718 5.2528 0.0029 8 6 4.0754 2.5387 0.0022 9 6 3.4397 1.2881 0.0058 10 6 4.5186 0.2808 0.0013 11 6 4.3686 -1.1202 0.0005 12 1 3.3812 -1.5576 0.0000 13 6 5.4971 -1.9434 0.0004 14 7 6.6955 -1.4126 0.0005 15 14 5.2983 -3.8008 -0.0014 16 1 3.8535 -4.1440 -0.0019 17 1 5.9423 -4.3665 -1.2141 18 1 5.9410 -4.3686 1.2109 19 6 5.7118 0.9926 0.0024 20 7 5.4399 2.3215 0.0028 21 6 6.4528 3.3799 0.0046 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8901 25 1 0.2169 2.3199 0.0001 26 1 1.3314 4.5111 0.0011 27 1 7.4793 -1.9843 0.0000 28 1 6.6998 0.5566 0.0032 29 1 6.7028 3.6418 1.0326 30 1 7.3475 3.0273 -0.5085 31 1 6.0616 4.2580 -0.5092 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082606174.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:43 Heat of formation + Delta-G solvation = 10.805330 kcal Electronic energy + Delta-G solvation = -17752.553982 eV Core-core repulsion = 14832.673311 eV Total energy + Delta-G solvation = -2919.880671 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.08067 -38.25358 -36.17690 -34.96939 -33.70650 -31.20987 -28.72113 -28.16537 -26.95959 -26.14062 -23.87533 -21.41682 -20.56990 -19.48204 -17.55845 -16.20592 -15.65623 -15.44937 -15.13124 -14.60633 -14.54468 -14.26194 -13.98264 -12.91665 -12.66035 -12.41319 -12.21974 -11.91840 -11.50031 -11.46913 -11.23578 -11.20752 -10.97693 -10.82493 -10.66495 -10.12331 -9.80314 -9.76154 -9.52925 -9.28089 -7.94507 -7.15323 -6.50321 -6.47426 -3.98680 2.02035 2.39042 2.87245 3.09132 3.18866 3.25861 3.83920 4.10183 4.11636 4.22573 4.57869 5.41207 5.53272 5.54341 5.59924 5.62301 5.70387 5.84475 5.91175 5.95200 6.09074 6.28859 6.59261 6.83509 6.90483 7.03376 7.16528 7.33843 7.74613 7.86728 8.19331 8.29042 8.59225 8.92591 9.13418 9.15539 10.47145 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.008101 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.329236 B = 3455.441846 C = 4887.324126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.299 6.299 3 C 0.199 3.801 4 C -0.283 4.283 5 C -0.063 4.063 6 C -0.094 4.094 7 Cl -0.109 7.109 8 C 0.116 3.884 9 C -0.151 4.151 10 C 0.041 3.959 11 C -0.404 4.404 12 H 0.082 0.918 13 C 0.053 3.947 14 N -0.831 5.831 15 Si 0.918 3.082 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.103 4.103 20 N -0.457 5.457 21 C 0.078 3.922 22 H 0.091 0.909 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.273 0.727 28 H 0.195 0.805 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 5.874 -0.097 8.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.211 6.211 3 C 0.153 3.847 4 C -0.305 4.305 5 C -0.083 4.083 6 C -0.124 4.124 7 Cl -0.081 7.081 8 C 0.002 3.998 9 C -0.159 4.159 10 C 0.036 3.964 11 C -0.436 4.436 12 H 0.100 0.900 13 C -0.157 4.157 14 N -0.461 5.461 15 Si 0.744 3.256 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.226 4.226 20 N -0.138 5.138 21 C -0.064 4.064 22 H 0.110 0.890 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.084 0.916 28 H 0.211 0.789 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.717 5.847 -0.098 7.514 hybrid contribution -0.158 -0.395 0.027 0.427 sum -4.876 5.452 -0.071 7.314 Atomic orbital electron populations 1.22957 0.80171 1.02976 1.00682 1.86218 1.19684 1.27289 1.87876 1.18463 0.90268 0.83490 0.92483 1.20418 0.98582 0.91294 1.20174 1.20028 0.90853 0.97092 1.00314 1.19532 0.91809 0.81892 1.19123 1.98244 1.81947 1.30086 1.97811 1.17374 0.84262 0.92059 1.06152 1.18513 0.89985 0.93577 1.13786 1.18005 0.87336 0.91726 0.99310 1.18940 0.93793 0.89437 1.41473 0.89961 1.25708 0.94639 1.01047 0.94299 1.69468 0.98606 1.36500 1.41540 0.86078 0.79292 0.82197 0.78028 1.18720 1.20377 1.20384 1.23412 1.01503 0.77767 1.19954 1.43518 1.02163 1.07118 1.60966 1.21949 0.91675 0.91013 1.01799 0.89037 0.93255 0.93248 0.86243 0.86334 0.91616 0.78909 0.92725 0.90981 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.30 -6.24 9.46 -19.24 -0.18 -6.43 16 3 C 0.20 4.42 6.71 -38.97 -0.26 4.15 16 4 C -0.28 -5.30 9.04 -39.38 -0.36 -5.66 16 5 C -0.06 -1.16 9.79 -39.54 -0.39 -1.54 16 6 C -0.09 -1.89 6.34 -39.28 -0.25 -2.14 16 7 Cl -0.11 -1.86 25.87 -51.86 -1.34 -3.20 16 8 C 0.12 2.69 6.75 -83.87 -0.57 2.12 16 9 C -0.15 -3.79 6.29 -104.79 -0.66 -4.44 16 10 C 0.04 1.12 6.10 -104.81 -0.64 0.48 16 11 C -0.40 -11.10 9.26 -38.03 -0.35 -11.45 16 12 H 0.08 2.24 6.95 -52.49 -0.36 1.87 16 13 C 0.05 1.37 5.49 -17.34 -0.10 1.28 16 14 N -0.83 -21.60 10.33 55.54 0.57 -21.03 16 15 Si 0.92 19.69 29.56 -169.99 -5.02 14.66 16 16 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 C -0.10 -2.68 10.32 -15.61 -0.16 -2.84 16 20 N -0.46 -10.50 3.15 -120.73 -0.38 -10.88 16 21 C 0.08 1.41 10.40 59.85 0.62 2.03 16 22 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.05 0.63 7.67 -51.93 -0.40 0.24 16 24 H 0.05 0.64 7.67 -51.93 -0.40 0.24 16 25 H 0.12 1.84 6.30 -52.49 -0.33 1.51 16 26 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.27 6.52 8.30 -40.82 -0.34 6.18 16 28 H 0.19 5.13 5.68 -52.49 -0.30 4.83 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.18 8.13 -51.93 -0.42 0.75 16 31 H 0.08 1.29 5.57 -51.93 -0.29 1.00 16 LS Contribution 276.58 15.07 4.17 4.17 Total: -1.00 -29.08 276.58 -7.20 -36.29 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -2.90 Total: 3.03 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -2.11 Total: -16.62 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.19 Total: -31.91 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.18 Total: -6.43 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -1.34 Total: -3.20 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.08 -7.20 -36.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082606174.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.090 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds