Wall clock time and date at job start Mon Mar 30 2020 06:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35851 * 116.99822 * 2 1 4 4 C 1.38491 * 120.19914 * 0.02562 * 3 2 1 5 5 C 1.38527 * 120.19427 * 180.02562 * 4 3 2 6 6 C 1.38042 * 120.66390 * 359.97438 * 5 4 3 7 7 Cl 1.73599 * 119.96838 * 180.02562 * 6 5 4 8 8 C 1.39231 * 120.06808 * 359.97438 * 6 5 4 9 9 N 1.38171 * 132.76450 * 180.37939 * 8 6 5 10 10 H 0.96997 * 124.69666 * 359.93009 * 9 8 6 11 11 C 1.35637 * 110.60710 * 180.10351 * 9 8 6 12 12 C 1.50697 * 125.37238 * 179.82336 * 11 9 8 13 13 C 1.38945 * 109.25621 * 359.55779 * 11 9 8 14 14 C 1.40901 * 126.92909 * 180.28179 * 13 11 9 15 15 H 1.08005 * 119.99662 * 142.15977 * 14 13 11 16 16 C 1.39686 * 120.00070 * 322.16099 * 14 13 11 17 17 N 1.31079 * 120.00029 * 340.81654 * 16 14 13 18 18 Si 1.86799 * 119.99866 * 160.81044 * 16 14 13 19 19 H 1.48504 * 109.47075 * 60.00205 * 18 16 14 20 20 H 1.48499 * 109.47259 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47564 * 300.00304 * 18 16 14 22 22 C 1.39613 * 120.19899 * 179.97438 * 3 2 1 23 23 H 1.09000 * 109.47272 * 300.00176 * 1 2 3 24 24 H 1.08997 * 109.46683 * 60.00223 * 1 2 3 25 25 H 1.08994 * 109.46584 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.90364 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.66438 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.46889 * 274.97540 * 12 11 9 29 29 H 1.08995 * 109.47501 * 154.97824 * 12 11 9 30 30 H 1.09002 * 109.47320 * 34.97419 * 12 11 9 31 31 H 0.96996 * 119.99466 * 175.41757 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2955 2.3745 0.0005 5 6 1.9245 3.6088 0.0000 6 6 3.3021 3.6969 -0.0005 7 17 4.0714 5.2531 -0.0005 8 6 4.0752 2.5390 0.0000 9 7 5.4397 2.3220 0.0064 10 1 6.1102 3.0229 0.0110 11 6 5.7118 0.9932 0.0015 12 6 7.0906 0.3851 0.0023 13 6 4.5187 0.2811 0.0018 14 6 4.3689 -1.1199 0.0031 15 1 3.5768 -1.5777 0.5771 16 6 5.2450 -1.9167 -0.7378 17 7 5.9483 -1.3885 -1.7097 18 14 5.4142 -3.7347 -0.3436 19 1 4.0973 -4.4014 -0.5073 20 1 6.4001 -4.3518 -1.2668 21 1 5.8799 -3.8963 1.0572 22 6 3.4397 1.2884 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 0.2169 2.3199 0.0005 27 1 1.3310 4.5111 0.0000 28 1 7.4615 0.3242 -1.0209 29 1 7.0463 -0.6153 0.4327 30 1 7.7615 1.0064 0.5956 31 1 6.6048 -1.9255 -2.1804 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082606175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:13 Heat of formation + Delta-G solvation = 0.389580 kcal Electronic energy + Delta-G solvation = -17796.453717 eV Core-core repulsion = 14876.121385 eV Total energy + Delta-G solvation = -2920.332332 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12275 -38.23835 -36.23646 -34.98263 -33.48482 -30.41922 -29.71518 -28.05873 -27.10852 -26.21527 -24.21709 -21.18794 -20.54116 -19.39940 -17.79387 -15.98816 -15.86794 -15.49924 -15.10101 -14.75774 -14.59733 -13.82040 -13.58742 -12.90407 -12.57605 -12.23866 -12.05985 -11.68072 -11.52843 -11.36094 -11.14241 -11.04115 -10.92445 -10.87370 -10.68778 -10.44416 -9.95073 -9.81675 -9.74729 -8.80071 -7.89044 -7.23418 -6.57528 -6.20628 -4.00706 1.96357 2.36736 2.84764 3.15113 3.21877 3.26627 3.92618 4.02225 4.18120 4.32400 4.58914 5.31308 5.41789 5.57271 5.59773 5.66604 5.85708 5.97369 6.21120 6.36781 6.55783 6.63966 6.82610 6.92451 6.95289 7.09540 7.24239 7.40789 7.46217 7.79018 8.17451 8.30338 8.59787 8.87284 9.06204 9.17953 10.54916 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019803 B = 0.008077 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.612892 B = 3465.803294 C = 4741.654408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.293 6.293 3 C 0.201 3.799 4 C -0.279 4.279 5 C -0.062 4.062 6 C -0.096 4.096 7 Cl -0.110 7.110 8 C 0.125 3.875 9 N -0.566 5.566 10 H 0.398 0.602 11 C -0.065 4.065 12 C -0.034 4.034 13 C 0.075 3.925 14 C -0.436 4.436 15 H 0.077 0.923 16 C 0.075 3.925 17 N -0.815 5.815 18 Si 0.894 3.106 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.146 4.146 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.021 0.979 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 5.073 2.425 7.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.205 6.205 3 C 0.155 3.845 4 C -0.301 4.301 5 C -0.081 4.081 6 C -0.126 4.126 7 Cl -0.082 7.082 8 C 0.011 3.989 9 N -0.165 5.165 10 H 0.233 0.767 11 C -0.170 4.170 12 C -0.092 4.092 13 C 0.070 3.930 14 C -0.469 4.469 15 H 0.095 0.905 16 C -0.138 4.138 17 N -0.444 5.444 18 Si 0.720 3.280 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.153 4.153 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.106 4.904 2.203 6.764 hybrid contribution 0.188 -0.096 -0.034 0.214 sum -3.918 4.808 2.169 6.570 Atomic orbital electron populations 1.22966 0.80240 1.03035 1.00621 1.86269 1.19560 1.27027 1.87631 1.18480 0.90336 0.83576 0.92158 1.20479 0.98723 0.91316 1.19570 1.20050 0.90883 0.97147 1.00069 1.19557 0.91881 0.82026 1.19113 1.98268 1.82299 1.29820 1.97821 1.17271 0.84144 0.92170 1.05351 1.41114 1.03683 1.07415 1.64296 0.76725 1.20444 0.96451 0.80139 1.19945 1.19870 0.89857 0.98976 1.00491 1.17604 0.86292 0.91650 0.97436 1.18501 1.13580 0.89378 1.25394 0.90528 1.25550 0.95405 0.99629 0.93217 1.70007 1.20214 1.38365 1.15840 0.86603 0.78624 0.83780 0.78993 1.19427 1.20883 1.19398 1.18734 0.90334 0.93597 1.12674 0.93300 0.93250 0.88994 0.86130 0.86201 0.92095 0.91410 0.95963 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.39 16 2 O -0.29 -6.17 10.17 -19.27 -0.20 -6.36 16 3 C 0.20 4.42 6.71 -38.98 -0.26 4.16 16 4 C -0.28 -5.17 9.04 -39.38 -0.36 -5.52 16 5 C -0.06 -1.11 9.79 -39.55 -0.39 -1.50 16 6 C -0.10 -1.89 6.34 -39.28 -0.25 -2.13 16 7 Cl -0.11 -1.85 28.96 -51.86 -1.50 -3.35 16 8 C 0.13 2.81 7.02 -83.87 -0.59 2.22 16 9 N -0.57 -12.33 5.99 -6.12 -0.04 -12.36 16 10 H 0.40 7.46 8.96 -40.82 -0.37 7.10 16 11 C -0.06 -1.57 6.88 -80.65 -0.56 -2.12 16 12 C -0.03 -0.75 8.59 36.00 0.31 -0.45 16 13 C 0.08 1.99 5.66 -104.81 -0.59 1.40 16 14 C -0.44 -11.74 8.84 -38.03 -0.34 -12.07 16 15 H 0.08 2.07 7.91 -52.48 -0.42 1.65 16 16 C 0.07 1.90 4.04 -17.33 -0.07 1.83 16 17 N -0.82 -21.18 10.60 55.54 0.59 -20.59 16 18 Si 0.89 19.32 29.60 -169.99 -5.03 14.29 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 C -0.15 -3.59 6.28 -104.80 -0.66 -4.25 16 23 H 0.05 0.62 7.67 -51.93 -0.40 0.22 16 24 H 0.05 0.65 7.67 -51.93 -0.40 0.25 16 25 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.12 1.83 6.30 -52.49 -0.33 1.50 16 27 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.06 1.37 7.38 -51.93 -0.38 0.99 16 29 H 0.07 1.55 6.75 -51.93 -0.35 1.20 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 280.93 15.07 4.23 4.23 Total: -1.00 -28.59 280.93 -7.74 -36.33 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.04 Total: 4.85 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.75 Total: -17.04 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.55 Total: -32.95 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.20 Total: -6.36 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -1.50 Total: -3.35 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.59 -7.74 -36.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082606175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.724 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds