Wall clock time and date at job start Mon Mar 30 2020 06:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99924 * 2 1 4 4 H 1.48499 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47089 * 300.00186 * 3 2 1 6 6 H 1.48501 * 109.46610 * 60.00357 * 3 2 1 7 7 C 1.37880 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00021 * 172.15399 * 7 2 1 9 9 C 1.50694 * 119.99656 * 352.15463 * 7 2 1 10 10 C 1.52994 * 115.55460 * 84.77876 * 9 7 2 11 11 S 1.81402 * 109.47094 * 65.42121 * 10 9 7 12 12 O 1.42097 * 109.47026 * 283.71935 * 11 10 9 13 13 C 1.76205 * 103.00076 * 174.66277 * 11 10 9 14 14 C 1.38124 * 120.03163 * 94.97868 * 13 11 10 15 15 C 1.38266 * 120.06749 * 180.02562 * 14 13 11 16 16 C 1.38306 * 120.15415 * 359.70110 * 15 14 13 17 17 C 1.38079 * 120.07108 * 0.55528 * 16 15 14 18 18 C 1.38891 * 120.03913 * 275.00333 * 13 11 10 19 19 N 1.39675 * 120.07542 * 359.95516 * 18 13 11 20 20 C 1.53001 * 117.49542 * 230.44713 * 9 7 2 21 21 C 1.53001 * 117.49926 * 299.10322 * 9 7 2 22 22 H 0.97000 * 119.99666 * 5.01450 * 1 2 3 23 23 H 1.09001 * 109.47288 * 305.42356 * 10 9 7 24 24 H 1.09002 * 109.47239 * 185.42267 * 10 9 7 25 25 H 1.07989 * 119.96863 * 0.02562 * 14 13 11 26 26 H 1.08010 * 119.92188 * 179.97438 * 15 14 13 27 27 H 1.08006 * 119.96592 * 180.29808 * 16 15 14 28 28 H 1.08001 * 120.03529 * 179.74763 * 17 16 15 29 29 H 0.96996 * 119.99917 * 180.02562 * 19 18 13 30 30 H 0.97005 * 119.99647 * 0.02562 * 19 18 13 31 31 H 1.09001 * 117.50240 * 214.99858 * 20 9 7 32 32 H 1.09006 * 117.50295 * 0.02628 * 20 9 7 33 33 H 1.09004 * 117.49732 * 359.97438 * 21 9 7 34 34 H 1.09006 * 117.50133 * 144.97722 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0770 -1.1983 -0.1282 9 6 1.2617 -2.4931 0.1770 10 6 0.6656 -3.0921 -1.0983 11 16 2.0045 -3.5699 -2.2251 12 8 2.5357 -2.4089 -2.8488 13 6 1.1485 -4.3702 -3.5410 14 6 0.7986 -3.6585 -4.6719 15 6 0.1264 -4.2857 -5.7046 16 6 -0.1923 -5.6283 -5.6120 17 6 0.1499 -6.3443 -4.4821 18 6 0.8246 -5.7172 -3.4421 19 7 1.1774 -6.4399 -2.3001 20 6 1.7821 -3.4651 1.2378 21 6 0.4846 -2.6900 1.4802 22 1 -0.4849 0.8369 -0.0734 23 1 0.0287 -2.3526 -1.5838 24 1 0.0732 -3.9712 -0.8444 25 1 1.0501 -2.6112 -4.7495 26 1 -0.1465 -3.7268 -6.5877 27 1 -0.7132 -6.1163 -6.4227 28 1 -0.1028 -7.3918 -4.4087 29 1 0.9509 -7.3806 -2.2323 30 1 1.6489 -6.0010 -1.5748 31 1 1.6997 -4.5314 1.0271 32 1 2.6616 -3.1649 1.8075 33 1 0.5111 -1.8802 2.2093 34 1 -0.4516 -3.2460 1.4289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:03 Heat of formation + Delta-G solvation = 10.224568 kcal Electronic energy + Delta-G solvation = -17837.654069 eV Core-core repulsion = 15055.625014 eV Total energy + Delta-G solvation = -2782.029054 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.99409 -36.55879 -34.99848 -34.17258 -31.90568 -30.71151 -28.38777 -27.59531 -25.28389 -22.75046 -21.91860 -21.17028 -19.25485 -17.68808 -16.89295 -16.58338 -16.03616 -15.44613 -14.61242 -14.14889 -14.10992 -13.91370 -13.53467 -13.49140 -12.95739 -12.82770 -12.44254 -11.75408 -11.52442 -11.15632 -10.94131 -10.86708 -10.74786 -10.57467 -10.44039 -10.25517 -9.77715 -9.36354 -8.88314 -8.81696 -8.44855 -8.23294 -7.61021 -7.25008 -6.00488 -4.07526 1.35353 1.80101 2.63970 3.33690 3.41687 3.47241 3.61065 3.85734 4.10390 4.46502 4.74567 5.08664 5.23476 5.28588 5.30329 5.50008 5.70492 5.95138 6.02372 6.17156 6.23217 6.32847 6.41278 6.53655 6.59328 6.67065 6.76645 6.87621 7.02153 7.09823 7.43601 7.51617 7.55818 7.77063 7.93082 8.37327 8.94500 9.60586 11.07550 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.006652 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.207455 B = 4208.444382 C = 4789.087596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.076 3.924 3 Si 0.889 3.111 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.501 4.501 8 H 0.064 0.936 9 C 0.060 3.940 10 C -0.385 4.385 11 S 1.308 4.692 12 O -0.838 6.838 13 C -0.532 4.532 14 C -0.007 4.007 15 C -0.197 4.197 16 C -0.051 4.051 17 C -0.217 4.217 18 C 0.282 3.718 19 N -0.873 5.873 20 C -0.216 4.216 21 C -0.151 4.151 22 H 0.259 0.741 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.127 0.873 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.400 0.600 30 H 0.400 0.600 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -15.282 -4.646 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.083 0.917 9 C 0.059 3.941 10 C -0.524 4.524 11 S 1.506 4.494 12 O -0.834 6.834 13 C -0.631 4.631 14 C -0.026 4.026 15 C -0.218 4.218 16 C -0.070 4.070 17 C -0.241 4.241 18 C 0.174 3.826 19 N -0.413 5.413 20 C -0.253 4.253 21 C -0.191 4.191 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.096 0.904 25 H 0.144 0.856 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.229 0.771 30 H 0.230 0.770 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.492 -14.983 -4.574 15.737 hybrid contribution -1.434 2.057 -0.844 2.646 sum 0.059 -12.926 -5.418 14.016 Atomic orbital electron populations 1.70002 1.05987 1.26610 1.48869 1.24943 0.94744 0.99087 0.93953 0.86570 0.80603 0.83758 0.77381 1.19430 1.21049 1.21013 1.20486 0.93467 0.88818 1.51041 0.91746 1.18285 0.97740 0.93563 0.84552 1.27228 1.12100 1.04818 1.08244 1.68628 0.90980 1.01280 0.88507 1.93106 1.68019 1.50151 1.72086 1.27781 1.19880 1.00785 1.14669 1.20958 0.90729 0.99518 0.91416 1.20980 1.05245 0.95378 1.00226 1.20935 0.95763 0.93989 0.96311 1.20583 1.07990 1.00045 0.95452 1.17192 0.89552 0.89432 0.86378 1.42652 1.66488 1.13168 1.18992 1.23156 0.98654 0.95645 1.07872 1.22530 0.92359 1.01073 1.03104 0.93149 0.88889 0.90416 0.85559 0.86643 0.86402 0.86235 0.77086 0.76962 0.91121 0.89919 0.90071 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.85 12.99 55.43 0.72 -25.13 16 2 C 0.08 2.19 5.38 -17.82 -0.10 2.10 16 3 Si 0.89 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.50 -13.91 8.21 -34.44 -0.28 -14.19 16 8 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 9 C 0.06 1.43 1.32 -155.67 -0.20 1.23 16 10 C -0.39 -8.36 5.74 37.15 0.21 -8.14 16 11 S 1.31 24.66 11.80 -107.50 -1.27 23.40 16 12 O -0.84 -21.21 16.47 -35.23 -0.58 -21.79 16 13 C -0.53 -9.18 5.65 -39.38 -0.22 -9.40 16 14 C -0.01 -0.12 9.45 -39.61 -0.37 -0.50 16 15 C -0.20 -2.99 10.04 -39.55 -0.40 -3.39 16 16 C -0.05 -0.66 10.04 -39.61 -0.40 -1.06 16 17 C -0.22 -2.73 9.90 -39.38 -0.39 -3.12 16 18 C 0.28 3.88 6.74 -83.79 -0.56 3.32 16 19 N -0.87 -8.57 9.02 32.41 0.29 -8.28 16 20 C -0.22 -4.17 9.96 -26.69 -0.27 -4.44 16 21 C -0.15 -3.41 9.49 -26.69 -0.25 -3.66 16 22 H 0.26 7.31 8.32 -40.82 -0.34 6.97 16 23 H 0.09 2.42 8.14 -51.92 -0.42 2.00 16 24 H 0.08 1.43 8.09 -51.92 -0.42 1.01 16 25 H 0.13 2.56 7.34 -52.49 -0.39 2.17 16 26 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 27 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.40 2.68 8.84 -40.82 -0.36 2.32 16 30 H 0.40 3.60 7.34 -40.82 -0.30 3.30 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 33 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 305.70 15.07 4.61 4.61 Total: -1.00 -35.91 305.70 -8.88 -44.79 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.39 Total: 6.17 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: -3.24 Total: -41.26 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 1.01 Total: -33.40 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.58 Total: -21.79 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 24.66 SS G_CDS: -1.27 Total: 23.40 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.91 -8.88 -44.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.016 kcal (2) G-P(sol) polarization free energy of solvation -35.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds