Wall clock time and date at job start Mon Mar 30 2020 06:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99924 * 2 1 4 4 H 1.48499 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47089 * 300.00186 * 3 2 1 6 6 H 1.48501 * 109.46610 * 60.00357 * 3 2 1 7 7 C 1.37880 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00021 * 172.15399 * 7 2 1 9 9 C 1.50694 * 119.99656 * 352.15463 * 7 2 1 10 10 C 1.52994 * 115.55460 * 84.77876 * 9 7 2 11 11 S 1.81402 * 109.47094 * 65.42121 * 10 9 7 12 12 O 1.42097 * 109.47026 * 283.71935 * 11 10 9 13 13 C 1.76205 * 103.00076 * 174.66277 * 11 10 9 14 14 C 1.38124 * 120.03163 * 94.97868 * 13 11 10 15 15 C 1.38266 * 120.06749 * 180.02562 * 14 13 11 16 16 C 1.38306 * 120.15415 * 359.70110 * 15 14 13 17 17 C 1.38079 * 120.07108 * 0.55528 * 16 15 14 18 18 C 1.38891 * 120.03913 * 275.00333 * 13 11 10 19 19 N 1.39675 * 120.07542 * 359.95516 * 18 13 11 20 20 C 1.53001 * 117.49542 * 230.44713 * 9 7 2 21 21 C 1.53001 * 117.49926 * 299.10322 * 9 7 2 22 22 H 0.97000 * 119.99666 * 5.01450 * 1 2 3 23 23 H 1.09001 * 109.47288 * 305.42356 * 10 9 7 24 24 H 1.09002 * 109.47239 * 185.42267 * 10 9 7 25 25 H 1.07989 * 119.96863 * 0.02562 * 14 13 11 26 26 H 1.08010 * 119.92188 * 179.97438 * 15 14 13 27 27 H 1.08006 * 119.96592 * 180.29808 * 16 15 14 28 28 H 1.08001 * 120.03529 * 179.74763 * 17 16 15 29 29 H 0.96996 * 119.99917 * 180.02562 * 19 18 13 30 30 H 0.97005 * 119.99647 * 0.02562 * 19 18 13 31 31 H 1.09001 * 117.50240 * 214.99858 * 20 9 7 32 32 H 1.09006 * 117.50295 * 0.02628 * 20 9 7 33 33 H 1.09004 * 117.49732 * 359.97438 * 21 9 7 34 34 H 1.09006 * 117.50133 * 144.97722 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0770 -1.1983 -0.1282 9 6 1.2617 -2.4931 0.1770 10 6 0.6656 -3.0921 -1.0983 11 16 2.0045 -3.5699 -2.2251 12 8 2.5357 -2.4089 -2.8488 13 6 1.1485 -4.3702 -3.5410 14 6 0.7986 -3.6585 -4.6719 15 6 0.1264 -4.2857 -5.7046 16 6 -0.1923 -5.6283 -5.6120 17 6 0.1499 -6.3443 -4.4821 18 6 0.8246 -5.7172 -3.4421 19 7 1.1774 -6.4399 -2.3001 20 6 1.7821 -3.4651 1.2378 21 6 0.4846 -2.6900 1.4802 22 1 -0.4849 0.8369 -0.0734 23 1 0.0287 -2.3526 -1.5838 24 1 0.0732 -3.9712 -0.8444 25 1 1.0501 -2.6112 -4.7495 26 1 -0.1465 -3.7268 -6.5877 27 1 -0.7132 -6.1163 -6.4227 28 1 -0.1028 -7.3918 -4.4087 29 1 0.9509 -7.3806 -2.2323 30 1 1.6489 -6.0010 -1.5748 31 1 1.6997 -4.5314 1.0271 32 1 2.6616 -3.1649 1.8075 33 1 0.5111 -1.8802 2.2093 34 1 -0.4516 -3.2460 1.4289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083855097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:03 Heat of formation + Delta-G solvation = -16.038606 kcal Electronic energy + Delta-G solvation = -17838.792925 eV Core-core repulsion = 15055.625014 eV Total energy + Delta-G solvation = -2783.167911 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.10002 -38.33869 -36.65315 -35.32371 -34.03421 -31.87260 -29.45838 -29.29503 -27.40034 -23.93248 -23.03769 -22.83198 -21.12682 -19.01976 -18.17520 -17.87339 -17.60694 -16.82441 -16.69788 -15.88711 -15.36651 -15.15843 -15.04992 -14.67948 -14.58564 -14.23871 -14.07748 -13.60737 -13.01877 -12.96079 -12.80828 -12.63669 -12.43095 -12.14461 -11.92357 -11.59515 -11.57972 -11.12125 -10.78518 -10.46639 -10.09754 -9.95698 -9.07378 -8.47637 -8.17497 -6.27016 0.13058 0.66695 1.20950 1.27457 1.30970 1.41456 2.15812 2.36168 2.84336 2.96405 3.10738 3.28242 3.55808 3.98126 4.19548 4.34448 4.46984 4.51334 4.61810 4.75309 4.77016 4.87759 5.03481 5.09171 5.12373 5.22985 5.36567 5.45987 5.63492 5.67782 5.73527 5.84396 5.96861 6.32735 6.55121 6.81174 7.07584 7.42069 8.89624 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.006652 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.207455 B = 4208.444382 C = 4789.087596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.507 4.507 8 H 0.050 0.950 9 C 0.017 3.983 10 C -0.382 4.382 11 S 1.372 4.628 12 O -0.915 6.915 13 C -0.561 4.561 14 C -0.044 4.044 15 C -0.210 4.210 16 C -0.040 4.040 17 C -0.210 4.210 18 C 0.292 3.708 19 N -0.854 5.854 20 C -0.171 4.171 21 C -0.165 4.165 22 H 0.256 0.744 23 H 0.036 0.964 24 H 0.113 0.887 25 H 0.083 0.917 26 H 0.127 0.873 27 H 0.159 0.841 28 H 0.165 0.835 29 H 0.421 0.579 30 H 0.406 0.594 31 H 0.128 0.872 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 -19.584 -4.666 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.016 3.984 10 C -0.519 4.519 11 S 1.573 4.427 12 O -0.911 6.911 13 C -0.664 4.664 14 C -0.064 4.064 15 C -0.231 4.231 16 C -0.059 4.059 17 C -0.233 4.233 18 C 0.181 3.819 19 N -0.395 5.395 20 C -0.208 4.208 21 C -0.204 4.204 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.131 0.869 25 H 0.102 0.898 26 H 0.145 0.855 27 H 0.176 0.824 28 H 0.182 0.818 29 H 0.254 0.746 30 H 0.237 0.763 31 H 0.146 0.854 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.305 -19.294 -4.517 19.859 hybrid contribution -1.404 3.202 -0.938 3.620 sum -0.099 -16.092 -5.455 16.992 Atomic orbital electron populations 1.70096 1.06912 1.26784 1.50820 1.25636 0.95547 1.01973 0.94592 0.85870 0.79767 0.80958 0.77380 1.19016 1.21950 1.19508 1.20839 0.93141 0.91123 1.49360 0.93189 1.18349 0.99853 0.94090 0.86146 1.27152 1.12478 1.04358 1.07944 1.67386 0.89050 0.98399 0.87850 1.92971 1.70734 1.52929 1.74445 1.27258 1.22905 1.02545 1.13642 1.20835 0.93569 0.98149 0.93803 1.21168 1.05124 0.97014 0.99782 1.21424 0.94275 0.92658 0.97554 1.21118 1.06009 1.01968 0.94178 1.17270 0.88642 0.88035 0.87942 1.42641 1.65141 1.14065 1.17625 1.23295 0.96621 0.97739 1.03154 1.22470 0.94760 1.01550 1.01631 0.93536 0.94475 0.86913 0.89827 0.85547 0.82377 0.81787 0.74612 0.76292 0.85443 0.89598 0.93069 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.95 12.99 21.45 0.28 -55.67 16 2 C 0.02 1.34 5.38 84.65 0.46 1.79 16 3 Si 0.93 47.92 29.55 68.60 2.03 49.95 16 4 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 6 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.51 -29.10 8.21 25.60 0.21 -28.89 16 8 H 0.05 2.92 7.83 -2.91 -0.02 2.90 16 9 C 0.02 0.82 1.32 -52.93 -0.07 0.75 16 10 C -0.38 -16.72 5.74 71.98 0.41 -16.30 16 11 S 1.37 52.43 11.80 -56.49 -0.67 51.77 16 12 O -0.92 -49.20 16.47 -148.98 -2.45 -51.66 16 13 C -0.56 -19.13 5.65 22.40 0.13 -19.00 16 14 C -0.04 -1.67 9.45 22.25 0.21 -1.46 16 15 C -0.21 -6.19 10.04 22.29 0.22 -5.97 16 16 C -0.04 -0.88 10.04 22.25 0.22 -0.66 16 17 C -0.21 -4.17 9.90 22.40 0.22 -3.95 16 18 C 0.29 6.99 6.74 38.21 0.26 7.25 16 19 N -0.85 -12.58 9.02 -51.37 -0.46 -13.04 16 20 C -0.17 -6.13 9.96 30.62 0.30 -5.82 16 21 C -0.16 -7.32 9.49 30.62 0.29 -7.03 16 22 H 0.26 15.18 8.32 -92.71 -0.77 14.41 16 23 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 24 H 0.11 3.95 8.09 -2.39 -0.02 3.93 16 25 H 0.08 3.78 7.34 -2.92 -0.02 3.76 16 26 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 27 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 28 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.42 3.05 8.84 -92.71 -0.82 2.23 16 30 H 0.41 5.41 7.34 -92.70 -0.68 4.73 16 31 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 33 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -85.68 305.70 1.21 -84.48 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -0.38 Total: 13.46 kcal Atomic # 6 Polarization: -82.15 SS G_CDS: 2.87 Total: -79.28 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -0.19 Total: -68.71 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -2.45 Total: -51.66 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Atomic # 16 Polarization: 52.43 SS G_CDS: -0.67 Total: 51.77 kcal Total: -85.68 1.21 -84.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.438 kcal (2) G-P(sol) polarization free energy of solvation -85.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds